Mercurial > repos > artbio > bigwig_to_bedgraph
comparison bigwigtobedgraph.xml @ 0:72fc45aeb17c draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
| author | artbio |
|---|---|
| date | Fri, 08 Oct 2021 13:08:20 +0000 |
| parents | |
| children | f0249c5ab93c |
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| -1:000000000000 | 0:72fc45aeb17c |
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| 1 <tool id="bigwig_to_bedgraph" name="BigWig to BedGraph" version="377+galaxy0"> | |
| 2 <description>converter</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="357">ucsc-bigwigtobedgraph</requirement> | |
| 5 </requirements> | |
| 6 <stdio> | |
| 7 <exit_code range="1:" level="fatal" description="Tool exception" /> | |
| 8 </stdio> | |
| 9 <command detect_errors="exit_code"><![CDATA[ | |
| 10 bigWigToBedGraph $input $output | |
| 11 ]]></command> | |
| 12 <inputs> | |
| 13 <param name="input" format="bigwig" type="data" label="BigWig file to convert" /> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="bedgraph" name="output" label="Convert ${on_string} in BedGraph" /> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input" value="1.bigwig" /> | |
| 21 <output name="output" file="1.bedgraph" /> | |
| 22 </test> | |
| 23 </tests> | |
| 24 <help><![CDATA[ | |
| 25 | |
| 26 bigWigToBedGraph - Convert from bigWig to bedGraph format. | |
| 27 | |
| 28 usage : bigWigToBedGraph in.bigWig out.bedGraph | |
| 29 | |
| 30 ]]></help> | |
| 31 <citations> | |
| 32 <citation type="doi">10.1093/bioinformatics/btq351</citation> | |
| 33 </citations> | |
| 34 </tool> |