Mercurial > repos > artbio > bigwig_to_bedgraph

diff bigwigtobedgraph.xml @ 0:72fc45aeb17c draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
author artbio
date Fri, 08 Oct 2021 13:08:20 +0000
parents
children f0249c5ab93c
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bigwigtobedgraph.xml	Fri Oct 08 13:08:20 2021 +0000
@@ -0,0 +1,34 @@
+<tool id="bigwig_to_bedgraph" name="BigWig to BedGraph" version="377+galaxy0">
+    <description>converter</description>
+    <requirements>
+        <requirement type="package" version="357">ucsc-bigwigtobedgraph</requirement>
+    </requirements>
+    <stdio>
+        <exit_code range="1:" level="fatal" description="Tool exception" />
+    </stdio>
+    <command detect_errors="exit_code"><![CDATA[
+        bigWigToBedGraph $input $output
+    ]]></command>
+    <inputs>
+        <param name="input" format="bigwig" type="data" label="BigWig file to convert" />
+    </inputs>
+    <outputs>
+        <data format="bedgraph" name="output" label="Convert ${on_string} in BedGraph" />
+    </outputs>
+    <tests>
+        <test>
+	    <param name="input" value="1.bigwig" />
+	    <output name="output" file="1.bedgraph" />	  
+        </test>
+     </tests>
+     <help><![CDATA[
+
+bigWigToBedGraph - Convert from bigWig to bedGraph format.
+
+usage : bigWigToBedGraph in.bigWig out.bedGraph
+
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btq351</citation>
+    </citations>
+</tool>