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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig commit 85bdb086a4aa403465844a0b10399440b31b65a7
author artbio
date Fri, 06 Oct 2023 00:19:35 +0000
parents ee2fbee916f7
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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1 <macros>
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ac8ea1ca115d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig commit 85bdb086a4aa403465844a0b10399440b31b65a7
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2 <token name="@VERSION@">3+galaxy0</token>
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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3 <macro name="requirements">
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4 <requirements>
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ac8ea1ca115d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig commit 85bdb086a4aa403465844a0b10399440b31b65a7
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5 <requirement type="package" version="377">ucsc-bigwiginfo</requirement>
ac8ea1ca115d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig commit 85bdb086a4aa403465844a0b10399440b31b65a7
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6 <requirement type="package" version="377">ucsc-bigwigsummary</requirement>
ac8ea1ca115d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig commit 85bdb086a4aa403465844a0b10399440b31b65a7
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7 <requirement type="package" version="1.07.1">bc</requirement>
ac8ea1ca115d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig commit 85bdb086a4aa403465844a0b10399440b31b65a7
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8 <requirement type="package" version="5.32.1">perl</requirement>
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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9 </requirements>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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10 </macro>
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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12 <macro name="citation">
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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13 <citations>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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14 <citation type="doi">10.1093/bioinformatics/btu056</citation>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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15 </citations>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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16 </macro>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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17 <token name="@HELP_CONTENT@">
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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18 .. class:: infomark
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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20 **What it does**
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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22 This tool converts a **BigWig** file to fixed step **Wiggle** format.
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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24 Thus, a Wiggle file produced by this tool reports values (real numbers) assigned to genomic intervals of fixed size.
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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26 The bin size is the size of this interval in nucleotide (500 nt by default).
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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28 The larger the bin size you choose, the lower resolution and the faster the conversion with the tool.
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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30 </token>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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32 <token name="@TOOL_ATTRIBUTION@">
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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33 .. class:: infomark
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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35 **Credits**
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ac8ea1ca115d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig commit 85bdb086a4aa403465844a0b10399440b31b65a7
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37 This tool is based on the script written by Jens Vilstrup Johansen and is an update
ac8ea1ca115d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig commit 85bdb086a4aa403465844a0b10399440b31b65a7
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38 of a Galaxy tool previously developed by nikos_.
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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40 .. _nikos: https://toolshed.g2.bx.psu.edu/view/nikos/bigwig_to_wig/974af3268394
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42 </token>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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43 </macros>