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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
author artbio
date Tue, 25 Sep 2018 17:41:20 -0400
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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1 <macros>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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2 <token name="@VERSION@">2.0.0</token>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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3 <macro name="requirements">
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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4 <requirements>
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5 <requirement type="package" version="366">ucsc-bigwiginfo</requirement>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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6 <requirement type="package" version="366">ucsc-bigwigsummary</requirement>
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7 <requirement type="package" version="1.06">bc</requirement>
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8 </requirements>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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9 </macro>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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11 <macro name="citation">
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12 <citations>
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13 <citation type="doi">10.1093/bioinformatics/btu056</citation>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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14 </citations>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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15 </macro>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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16 <token name="@HELP_CONTENT@">
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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17 .. class:: infomark
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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19 **What it does**
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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21 This tool converts a **BigWig** file to fixed step **Wiggle** format.
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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23 Thus, a Wiggle file produced by this tool reports values (real numbers) assigned to genomic intervals of fixed size.
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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25 The bin size is the size of this interval in nucleotide (500 nt by default).
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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27 The larger the bin size you choose, the lower resolution and the faster the conversion with the tool.
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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29 </token>
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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31 <token name="@TOOL_ATTRIBUTION@">
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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32 .. class:: infomark
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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34 **Credits**
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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36 This tool is based on the script written by Jens Vilstrup Johansen and is an update of a Galaxy tool previously developed by nikos_.
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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38 It uses bigWigInfo_ and bigWigSummary_.
ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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40 For support and bug reports contact Cedric Mendoza or Christophe Antoniewski or go to https://github.com/ARTbio/tools-artbio
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ee2fbee916f7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
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42 .. _nikos: https://toolshed.g2.bx.psu.edu/view/nikos/bigwig_to_wig/974af3268394
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43 .. _bigWigInfo: https://github.com/adamlabadorf/ucsc_tools/blob/master/executables/bigWigInfo
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44 .. _bigWigSummary: https://github.com/adamlabadorf/ucsc_tools/blob/master/executables/bigWigSummary
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46 </token>
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47 </macros>