Mercurial > repos > artbio > bigwig_to_wig

comparison macros.xml @ 0:ee2fbee916f7 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56
author artbio
date Tue, 25 Sep 2018 17:41:20 -0400
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children ac8ea1ca115d
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-1:000000000000 0:ee2fbee916f7
1 <macros>
2 <token name="@VERSION@">2.0.0</token>
3 <macro name="requirements">
4 <requirements>
5 <requirement type="package" version="366">ucsc-bigwiginfo</requirement>
6 <requirement type="package" version="366">ucsc-bigwigsummary</requirement>
7 <requirement type="package" version="1.06">bc</requirement>
8 </requirements>
9 </macro>
10
11 <macro name="citation">
12 <citations>
13 <citation type="doi">10.1093/bioinformatics/btu056</citation>
14 </citations>
15 </macro>
16 <token name="@HELP_CONTENT@">
17 .. class:: infomark
18
19 **What it does**
20
21 This tool converts a **BigWig** file to fixed step **Wiggle** format.
22
23 Thus, a Wiggle file produced by this tool reports values (real numbers) assigned to genomic intervals of fixed size.
24
25 The bin size is the size of this interval in nucleotide (500 nt by default).
26
27 The larger the bin size you choose, the lower resolution and the faster the conversion with the tool.
28
29 </token>
30
31 <token name="@TOOL_ATTRIBUTION@">
32 .. class:: infomark
33
34 **Credits**
35
36 This tool is based on the script written by Jens Vilstrup Johansen and is an update of a Galaxy tool previously developed by nikos_.
37
38 It uses bigWigInfo_ and bigWigSummary_.
39
40 For support and bug reports contact Cedric Mendoza or Christophe Antoniewski or go to https://github.com/ARTbio/tools-artbio
41
42 .. _nikos: https://toolshed.g2.bx.psu.edu/view/nikos/bigwig_to_wig/974af3268394
43 .. _bigWigInfo: https://github.com/adamlabadorf/ucsc_tools/blob/master/executables/bigWigInfo
44 .. _bigWigSummary: https://github.com/adamlabadorf/ucsc_tools/blob/master/executables/bigWigSummary
45
46 </token>
47 </macros>