Mercurial > repos > artbio > cherry_pick_fasta

annotate cherry_pick_fasta.xml @ 1:ea8fde9c6f82 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
author artbio
date Wed, 09 Oct 2019 18:48:17 -0400
parents e3aee4ba49c6
children 321cad0eb507
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
1 <tool id="cherry_pick_fasta" name="Pick Fasta sequences" version="2.0.0">
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
2 <description>with header satisfying a string query</description>
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
3 <command interpreter="python">cherry_pick_fasta.py
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
4 --input $input
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
5 --searchfor '$search.searchfor'
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
6 #if $search.options_selector == 'single':
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
7 --query-string '$search.query'
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
8 #else:
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
9 --query-file '$search.query'
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
10 #end if
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
11 --output $output
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
12 </command>
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
13
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
14 <inputs>
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
15 <param name="input" type="data" format="fasta" label="Source file" help="Fasta file to parse" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
16
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
17 <conditional name="search">
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
18 <param name="options_selector" type="select" display="radio" label="by single term or file of terms">
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
19 <option value="single" selected="True">single term</option>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
20 <option value="textdataset">terms in a text dataset</option>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
21 </param>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
22 <when value="single">
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
23 <param name="query" type="text" size="30" value="" label="Search string" help="exemple: gi|40557596">
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
24 <sanitizer>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
25 <valid initial="string.printable">
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
26 <remove value="&quot;"/>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
27 <remove value="\"/>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
28 </valid>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
29 <mapping initial="none">
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
30 <add source="&quot;" target="\&quot;"/>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
31 <add source="\" target="\\"/>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
32 </mapping>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
33 </sanitizer>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
34 </param>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
35 <param name="searchfor" type="select" label="retrieve sequences whose headers contain or do not contain the search string">
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
36 <option value="with" selected="true">contain</option>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
37 <option value="without">do not contain</option>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
38 </param>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
39 </when>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
40 <when value="textdataset">
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
41 <param name="query" type="data" format="txt" label="term dataset" help="a list of term to search for, one term per line" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
42 <param name="searchfor" type="select" label="retrieve sequences whose headers contain or do not contain the search list">
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
43 <option value="with" selected="true">contain</option>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
44 <option value="without">do not contain</option>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
45 </param>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
46 </when>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
47 </conditional>
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
48 </inputs>
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
49 <outputs>
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
50 <data name="output" format="fasta" label="Fasta sequences ${search.searchfor.value} ${search.options_selector} term(s) in header" />
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
51 </outputs>
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
52 <tests>
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
53 <test>
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
54 <param ftype="fasta" name="input" value="input.fa" />
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
55 <!-- <param name="options_selector" value="textdataset" /> -->
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
56 <param name="query" value="gi|81971654" />
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
57 <param name="searchfor" value="with" />
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
58 <output name="output" ftype="fasta" file="output.fa" />
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
59 </test>
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
60 <test>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
61 <param ftype="fasta" name="input" value="input.fa" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
62 <!-- <param name="options_selector" value="textdataset" /> -->
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
63 <param name="query" value="RNA" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
64 <param name="searchfor" value="without" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
65 <output name="output" ftype="fasta" file="output_without.fa" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
66 </test>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
67 <test>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
68 <param ftype="fasta" name="input" value="input.fa" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
69 <param name="options_selector" value="textdataset" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
70 <param name="query" ftype="txt" value="termlist.txt" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
71 <param name="searchfor" value="without" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
72 <output name="output" ftype="fasta" file="output_termlist.fa" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
73 </test>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
74 <test>
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
75 <param ftype="fasta" name="input" value="input.fa" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
76 <param name="options_selector" value="textdataset" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
77 <param name="query" ftype="txt" value="termlist.txt" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
78 <param name="searchfor" value="without" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
79 <output name="output" ftype="fasta" file="output_termlist_without.fa" />
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
80 </test>
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
81 </tests>
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
82
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
83 <help>
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
84 **What it does**
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
85
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
86 This tool retrieves nucleotide/peptide sequences from a fasta file whose headers match
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
87 or do not match a given string.
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
88
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
89 It is Copyright © 2019 `CNRS and Sorbonne-Université`_ and is released under the `MIT license`_.
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
90
1
ea8fde9c6f82 "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents: 0
diff changeset
91 .. _CNRS and Sorbonne-Université: http://www.sorbonne-universite.fr/en
0
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
92 .. _MIT license: http://opensource.org/licenses/MIT
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
93
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
94 </help>
e3aee4ba49c6 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff changeset
95 </tool>