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view test-data/test_sample_01.cnv.vcf @ 8:e8a8a4910e32 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit 2a0f9aee1c61e12ab9f0e25a6ba7db5c08b67fe6
author artbio
date Thu, 09 Oct 2025 17:14:30 +0000
parents 1d56a6b5739f
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##fileformat=VCFv4.2
##fileDate=20251006
##source=FACETS_v0.6.2
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant (standard VCF tags: DEL, DUP, CNV)">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Length of the SV">
##INFO=<ID=EVENT,Number=1,Type=String,Description="FACETS event classification. Possible values: DUP, HEMIZYG_DEL, HOMOZYG_DEL, CN_LOH">
##INFO=<ID=TCN,Number=1,Type=Integer,Description="Total Copy Number (EM fit)">
##INFO=<ID=LCN,Number=1,Type=Integer,Description="Lesser Copy Number (EM fit)">
##INFO=<ID=NUM_MARK,Number=1,Type=Integer,Description="Number of SNPs in the segment">
##INFO=<ID=NHET,Number=1,Type=Integer,Description="Number of heterozygous SNPs in the segment">
##FACETS_PURITY=NA
##FACETS_PLOIDY=2
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO