Mercurial > repos > artbio > cpm_tpm_rpk

changeset 5:bcff1eb6fdb5 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cpm_tpm_rpk commit d6ef3d1c1d490967b7b79138573a86a8d5235c43
author artbio
date Fri, 06 Oct 2023 18:00:05 +0000
parents be358a1ebf67
children d2575928b824
files cpm_tpm_rpk.R cpm_tpm_rpk.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/cpm_tpm_rpk.R	Thu Oct 05 13:50:22 2023 +0000
+++ b/cpm_tpm_rpk.R	Fri Oct 06 18:00:05 2023 +0000
@@ -161,7 +161,7 @@
 
 #### running code ####
 
-data <- read.table(
+data <- read.delim(
   opt$data,
   check.names = FALSE,
   header = opt$colnames,
@@ -171,7 +171,7 @@
 
 if (opt$type == "tpm" || opt$type == "rpk") {
   gene_length <- as.data.frame(
-    read.table(
+    read.delim(
       opt$gene,
       header = opt$gene_header,
       row.names = 1,
--- a/cpm_tpm_rpk.xml	Thu Oct 05 13:50:22 2023 +0000
+++ b/cpm_tpm_rpk.xml	Fri Oct 06 18:00:05 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="cpm_tpm_rpk" name="Generate CPM, TPM, RPK" version="0.5.0">
+<tool id="cpm_tpm_rpk" name="Generate CPM, TPM, RPK" version="0.5.1">
     <description>from raw counts expression values</description>
     <requirements>
         <requirement type="package" version="1.7.1">r-optparse</requirement>