Mercurial > repos > artbio > deseq2_normalization

comparison test-data/counts.tab @ 0:6b990f6c6ba9 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/deseq2_normalization commit 9dfb5a5331b87d213f495febbfccff0f54becb73
author artbio
date Mon, 08 Jan 2018 04:21:24 -0500
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-1:000000000000 0:6b990f6c6ba9
1 Geneid 2: Oocyte 1: accepted_hits 3: Oocyte 2: accepted_hits 4: Pronuclei 1: accepted_hits 5: pronuclei 2: accepted_hits 6: Pronuclei 3: accepted_hits
2 NM_001195025 0 0 0 0 0
3 NM_028778 0 0 0 0 0
4 NM_001290393 0 0 0 0 0
5 NM_008922 3133 2276 2288 2659 820
6 NM_175370 4 22 7 16 9
7 NM_001290390 0 0 0 0 0
8 NM_175642 977 1711 1013 459 430
9 NM_001290392 0 0 0 0 0
10 NM_027671 0 0 0 0 0
11 NM_178884 0 0 0 2 3
12 NM_199021 332 413 1436 836 1018
13 NM_198680 0 0 0 0 0
14 NM_011465 0 4 0 0 0
15 NM_130890 0 0 0 0 0
16 NM_001113393 0 0 0 0 0
17 NM_001113392 0 0 0 0 0
18 NM_001113391 19 3 88 15 31
19 NM_031162 0 0 0 0 0
20 NR_103716 0 0 0 0 0
21 NM_001160371 0 0 0 0 0
22 NM_177834 1 3 2 0 1
23 NM_145381 606 445 367 306 259
24 NM_177173 0 0 0 0 0
25 NM_001160369 0 0 0 0 0
26 NM_001160370 2 21 9 8 25
27 NM_001289497 0 0 0 0 0
28 NM_027974 0 0 6 7 8
29 NM_133235 74 23 0 2 29
30 NM_028096 77 87 2 0 17
31 NM_201365 1 0 0 0 0
32 NM_001126046 0 0 0 0 0
33 NM_001081198 31 2 144 25 50
34 NM_001160386 890 1574 1226 622 737
35 NM_009418 456 459 774 531 484
36 NM_001114663 369 291 353 202 300
37 NM_001252070 346 629 463 324 296
38 NR_045151 0 0 0 0 0
39 NM_001081050 93 63 35 62 68
40 NM_007642 0 0 0 0 0
41 NM_025728 0 0 0 0 0
42 NM_029160 0 0 0 0 0
43 NM_175210 290 213 346 233 206
44 NM_010154 31 0 23 0 28
45 NM_175291 0 0 0 0 0
46 NM_010472 265 93 1666 1033 1618
47 NM_023314 0 0 20 2 3
48 NM_027456 0 0 0 0 0
49 NM_030184 5 2 11 0 9
50 NM_009183 0 0 0 0 0
51 NM_011066 40 82 12 50 12
52 NM_145519 32 39 140 102 139
53 NM_173760 8045 15205 6907 4043 3535
54 NM_172851 0 0 0 0 0
55 NM_019933 125 2 54 107 23
56 NM_176957 0 0 0 0 0
57 NM_001081756 0 0 0 0 0
58 NM_181750 1448 678 1651 1708 1403
59 NM_019777 0 0 0 9 8
60 NM_172484 0 0 0 0 0
61 NM_028320 46 99 70 203 193
62 NM_021605 790 624 949 1111 656
63 NM_173437 1290 1660 1131 1056 1119
64 NM_001287179 2333 1539 2559 1970 1893
65 NM_175443 0 0 0 0 0
66 NM_007495 0 0 0 0 0
67 NM_022312 0 0 0 0 0
68 NM_001081290 3128 1917 1875 1574 1278
69 NM_013862 79 46 236 144 82
70 NM_001205204 0 0 0 0 0
71 NM_001159525 0 0 0 0 0
72 NM_023041 1 2 2 0 8
73 NM_022563 464 125 427 414 431
74 NM_011880 0 0 0 0 0
75 NM_026626 31 7 0 0 4
76 NM_001199003 0 0 0 0 0
77 NM_027188 248 307 359 185 728
78 NM_001243792 0 0 1 0 0
79 NM_133684 2924 5872 2392 2087 1746
80 NM_001011874 88 39 28 13 0
81 NM_001159750 0 0 0 0 0
82 NM_001159751 3 0 0 0 0
83 NM_001195662 0 0 1 0 0
84 NM_001177795 0 0 0 0 0
85 NM_133826 2265 3916 2743 1710 1934
86 NM_011541 0 0 0 0 0
87 NM_021374 0 0 0 0 0
88 NM_001290372 0 0 0 0 0
89 NM_001244693 0 0 0 0 0
90 NM_001244692 0 0 0 0 0
91 NR_045189 0 0 0 0 0
92 NR_045188 0 0 0 0 0
93 NM_173868 0 0 0 0 0
94 NR_015470 62 92 217 159 174
95 NM_133220 0 0 0 0 0
96 NM_145692 2 12 6 16 0
97 NM_026493 37 93 10 3 90
98 NR_110971 0 0 0 0 0
99 NM_177547 0 0 0 0 0
100 NM_029525 0 0 0 0 6
101 NM_001033636 11 24 11 13 12
102 NM_001077695 0 0 0 0 0
103 NM_001302702 0 0 0 0 0
104 NM_001081209 0 4 2 5 8
105 NM_172841 76 91 564 193 377
106 NM_172294 0 0 0 0 0
107 NM_001198565 0 0 0 0 0
108 NM_001198566 0 0 0 0 0
109 NM_008678 2 5 1 7 7
110 NM_010164 12 17 10 4 26
111 NM_001252192 0 0 0 0 0
112 NM_001098528 62 77 55 15 31
113 NM_025303 4 1 6 3 2
114 NM_133832 7337 7347 4876 3469 4358
115 NM_001033288 15 88 8 31 4
116 NM_001111272 0 0 0 0 0
117 NM_026456 1919 1737 2756 2292 2722
118 NM_020604 35 18 27 0 33
119 NR_130314 7 11 1 5 7
120 NM_153154 8 2 18 2 2
121 NM_153179 30 115 130 253 155
122 NM_001077353 0 0 0 0 0
123 NM_001288617 0 0 0 0 0
124 NM_010356 0 0 0 0 0
125 NM_023872 0 0 0 0 0
126 NM_001160139 0 0 0 0 0
127 NM_183018 0 0 0 0 0
128 NM_001012623 0 0 0 0 0
129 NM_053270 0 0 0 0 0
130 NM_001012624 0 0 0 0 0
131 NM_001012625 0 0 0 0 0
132 NR_110972 0 0 0 0 0
133 NM_028534 22 19 21 15 16
134 NM_001290683 0 0 0 0 0
135 NM_007733 111 240 280 157 390
136 NM_007740 0 0 0 0 0
137 NM_026719 1136 919 514 473 354
138 NM_001290691 0 0 0 0 0
139 NM_001033764 0 0 0 0 0
140 NM_001013750 0 0 0 0 0
141 NM_177235 43 87 42 31 10
142 NM_133833 0 0 0 0 0
143 NM_134448 0 0 0 0 0
144 NM_001276764 7 41 28 12 14
145 NM_183019 9 7 2 0 4
146 NM_001277076 12 11 68 30 171
147 NM_001039551 0 0 0 0 0
148 NM_053186 0 0 0 0 0
149 NM_198006 817 569 1015 716 250
150 NM_001289766 0 0 0 0 0
151 NM_009539 0 0 0 0 0
152 NM_018872 3195 3604 2254 2124 1074
153 NM_001289765 0 0 0 0 0
154 NM_001290721 0 0 0 0 0
155 NM_001290814 15 15 332 276 280
156 NM_019570 822 1362 545 366 406
157 NM_027111 0 0 0 0 0
158 NM_207228 0 0 0 0 4
159 NM_001290720 2 0 0 0 0
160 NR_110976 31 66 36 36 38
161 NM_008719 579 318 349 375 471
162 NM_018775 9019 9109 10143 8198 4718
163 NM_145142 90 126 9 50 74
164 NM_001123382 0 0 0 0 0
165 NM_001252202 0 0 0 0 0
166 NM_001252200 0 0 0 0 0
167 NM_001294171 0 0 0 0 0
168 NM_001252201 1 1 0 8 4
169 NM_008696 0 0 0 0 0
170 NM_008362 0 0 0 1 1
171 NM_010743 0 0 0 0 0
172 NM_001025602 0 0 0 0 0
173 NM_001033289 0 2 2 0 0
174 NR_027826 0 0 13 7 0
175 NM_010879 0 2 0 5 8
176 NM_001013025 1593 1163 2602 2065 1707
177 NM_023645 1984 2457 999 754 521
178 NM_028450 191 153 89 42 62
179 NM_007737 0 0 0 0 0
180 NM_028599 2428 2232 2519 1471 1420
181 NM_019790 35 253 105 32 91
182 NM_010863 0 0 0 0 0
183 NM_001290982 0 0 0 0 0
184 NM_001161817 0 0 0 0 0
185 NM_001142647 0 0 0 0 0
186 NM_153556 495 220 503 449 460
187 NM_146108 0 4 0 4 0
188 NR_024590 0 0 0 0 0
189 NM_030025 25 24 53 2 27
190 NM_172655 0 0 0 0 0
191 NM_001001883 78 42 147 105 118
192 NM_001081433 13714 11715 20555 14284 12333
193 NM_031179 28668 22587 20953 15223 12550
194 NM_139146 319 329 229 281 209
195 NM_199007 130 68 41 59 31
196 NM_001177867 0 0 0 0 0
197 NM_001164566 0 0 0 0 0
198 NM_025824 1651 2890 1530 1351 1365
199 NM_023617 0 0 0 13 0
200 NM_144882 0 0 0 0 0
201 NM_172513 4659 3219 7514 5312 4923
202 NM_001013771 83 15 56 78 26
203 NM_001033373 558 275 310 335 202
204 NM_028717 0 0 0 0 0
205 NM_172406 9 169 346 125 170
206 NM_001159948 0 0 0 0 0
207 NM_175200 38 1 14 0 27
208 NM_001045513 458 696 714 446 384
209 NM_173444 444 268 408 338 566
210 NM_139150 0 0 0 0 0
211 NM_007561 3461 3611 3400 2060 2372
212 NM_030013 81 78 461 259 121
213 NM_001037725 7010 12588 6779 4386 4068
214 NM_001285463 0 0 0 2 0
215 NM_001077404 0 0 0 0 0
216 NM_001077405 0 0 0 0 0
217 NM_001077406 0 0 0 0 0
218 NM_001077407 0 0 0 0 0
219 NM_010939 0 0 0 0 0
220 NM_001077403 0 0 0 0 0
221 NR_045915 18 6 26 12 11
222 NM_001285937 0 0 0 0 0
223 NM_001285936 0 0 0 0 0
224 NM_001081658 0 0 0 0 0
225 NR_045914 0 0 2 0 0
226 NM_011780 0 0 2 0 2
227 NM_001177600 0 0 0 0 0
228 NM_009952 0 0 0 0 0
229 NM_001097644 8358 12958 3205 4179 1194
230 NM_001039493 1595 1500 1557 806 600
231 NM_001037726 0 0 0 0 0
232 NM_133828 0 0 0 0 0
233 NM_033563 4320 3106 2839 2786 2207
234 NM_011086 1063 1302 819 660 611
235 NM_139270 0 6 0 0 0
236 NM_175510 105 88 116 92 248
237 NM_021285 0 0 0 0 0
238 NM_008632 0 0 0 0 0
239 NM_001039934 0 0 0 0 0
240 NM_177645 3 3 6 2 1
241 NM_001122738 0 0 0 0 0
242 NM_001113387 0 0 0 0 0
243 NM_001080809 242 234 444 251 327
244 NM_011770 185 65 205 132 100
245 NM_177164 137 55 61 153 42
246 NM_001276408 0 0 0 0 0
247 NM_001276412 0 0 0 0 0
248 NM_001276411 0 0 0 0 0
249 NM_001276410 0 0 0 0 0
250 NM_001276409 0 0 0 0 0
251 NM_010233 0 0 0 0 0
252 NM_001276413 0 0 0 0 0
253 NM_001005423 109 107 135 113 114
254 NM_008342 0 0 2 0 0
255 NM_001045533 627 912 848 621 611
256 NM_176980 0 7 7 11 0
257 NM_001170641 0 0 0 0 0
258 NM_027884 0 0 0 0 0
259 NR_045311 0 28 0 12 6
260 NM_001034060 0 0 0 0 0
261 NM_001289895 0 0 0 0 0
262 NM_029342 121 101 618 437 801
263 NM_009518 0 0 0 0 0
264 NM_001039495 0 0 0 0 0
265 NM_001159884 0 0 0 0 0
266 NM_001159885 0 0 0 5 0
267 NM_001159883 0 0 0 0 1
268 NM_178055 0 0 0 0 0
269 NM_020266 0 0 0 0 0
270 NM_001014974 258 255 657 671 561
271 NM_176972 4705 5107 5534 3575 3096
272 NR_037976 0 0 0 0 0
273 NM_007936 5937 5059 4482 5139 2952
274 NM_008781 0 20 0 2 0
275 NM_026713 0 0 0 0 0
276 NM_001159520 0 0 0 0 0
277 NM_001004173 149 209 46 32 69
278 NM_001285927 0 0 0 0 0
279 NM_009255 23375 35901 13582 11130 7533
280 NM_172849 41 14 206 175 223
281 NM_029777 0 0 0 0 0
282 NM_007735 0 0 0 0 0
283 NM_007734 145 84 233 74 145
284 NM_172430 0 0 17 0 24
285 NM_133975 22051 34509 37255 25194 24917
286 NM_152915 98 28 4 49 71
287 NM_001003948 2771 5498 2921 1826 1363
288 NM_001081746 17 5 11 9 15
289 NM_013673 30 230 70 34 57
290 NM_001144993 0 0 0 0 0
291 NM_001144992 0 0 0 0 0
292 NM_001172157 0 0 0 0 0
293 NM_001081082 0 0 0 0 0
294 NM_008801 252 266 1115 696 1552
295 NM_153530 0 0 0 0 0
296 NM_201644 0 0 0 0 0
297 NM_001110192 0 0 0 0 0
298 NM_001205391 0 0 0 0 0
299 NM_019867 0 0 2 0 0
300 NM_001205392 0 0 0 0 0
301 NM_201410 0 0 0 0 0
302 NM_029846 0 0 0 0 0
303 NM_001110212 0 0 0 0 0
304 NM_001111314 0 0 23 0 10
305 NM_146112 0 0 0 0 0
306 NM_010566 0 0 0 0 0
307 NR_122078 0 0 0 0 0
308 NM_201642 0 0 0 0 0
309 NM_201641 0 0 0 0 0
310 NM_001110193 0 0 0 0 0
311 NM_177646 1676 2023 2127 1583 1695
312 NM_145079 0 0 0 0 0
313 NM_029269 0 0 0 0 0
314 NM_139152 0 0 0 0 0
315 NM_029122 7144 12565 9137 6805 5020
316 NM_178119 2 0 11 1 0
317 NM_001037136 0 0 0 0 0
318 NM_001111312 0 0 0 1 0
319 NM_001033408 7 15 337 94 165
320 NM_001243009 0 0 0 0 0
321 NM_001243008 0 0 0 0 0
322 NM_023046 0 0 0 0 0
323 NM_001039126 0 0 0 0 0
324 NM_207225 338 253 255 319 209
325 NM_007855 0 0 0 0 0
326 NM_001271884 0 0 0 0 0
327 NM_207031 0 0 1 0 2
328 NM_172463 33 49 16 4 6
329 NM_008798 0 15 0 10 49
330 NM_174874 198 166 623 391 381
331 NR_040467 0 0 0 0 0
332 NM_028942 0 0 0 0 0
333 NR_120500 0 29 64 21 0
334 NM_027584 0 0 0 0 0
335 NM_001164233 0 0 0 0 0
336 NM_013626 5 4 14 0 4
337 NM_011800 468 545 279 171 142
338 NM_173187 0 0 0 0 0
339 NM_009399 0 0 0 4 0
340 NM_013784 1048 1040 1091 709 522
341 NM_178779 0 0 0 0 0
342 NM_029349 0 0 0 0 0
343 NM_001160368 0 0 0 0 0
344 NM_009741 2 30 37 2 10
345 NM_133821 96 143 34 154 70
346 NM_198028 0 0 0 0 0
347 NM_001160307 0 0 0 0 0
348 NR_102307 0 0 0 0 0
349 NR_102306 0 0 0 0 0
350 NM_172853 0 0 31 0 0
351 NM_001081386 196 127 135 23 53
352 NM_001077425 0 0 25 0 20
353 NM_029709 0 0 0 0 0
354 NM_001293300 0 0 1 0 0
355 NM_001293301 0 0 0 0 0
356 NM_145506 51 29 74 93 85
357 NM_022327 0 0 0 0 0
358 NM_001081125 561 547 386 363 493
359 NM_001113416 1958 3537 2652 1849 1563
360 NM_001172074 3 2 0 3 2
361 NM_133186 0 0 0 0 0
362 NM_001085409 0 0 0 0 0
363 NM_028439 0 0 0 0 0
364 NM_178082 0 0 0 0 0
365 NM_029955 0 0 0 0 0
366 NM_133748 0 0 0 0 0
367 NM_001271532 0 0 0 0 0
368 NM_001271531 0 0 0 0 0
369 NM_001025156 0 0 0 0 0
370 NM_027677 0 4 0 7 0
371 NM_145100 0 0 0 0 0
372 NM_028135 0 53 47 38 32
373 NM_001033041 0 0 0 0 0
374 NM_001285945 0 0 0 0 0
375 NM_145128 0 2 41 17 17
376 NM_027678 0 0 0 1 0
377 NM_177445 331 211 743 896 911
378 NM_026390 7243 4696 6281 4942 4840
379 NM_172485 329 281 620 132 133
380 NM_026976 0 0 0 0 0
381 NM_009581 8 12 104 100 35
382 NM_007799 0 0 0 0 0
383 NM_175382 3678 2665 1498 1021 1118
384 NM_172510 17 0 40 11 13
385 NM_001114662 96 270 89 264 374
386 NM_175294 0 0 0 0 0
387 NM_001145804 0 0 0 0 0
388 NM_001081011 107 59 390 242 420
389 NM_001160318 0 0 0 0 0
390 NM_001099276 501 295 655 383 501
391 NM_001160317 0 0 0 0 0
392 NM_001160316 0 0 0 0 0
393 NM_182716 0 0 0 0 4
394 NM_172516 4014 3110 2948 2670 2506
395 NM_144530 0 0 0 0 0
396 NM_001276767 0 0 0 0 0
397 NM_001145300 0 0 0 0 0
398 NM_001081307 54 66 88 36 109
399 NM_053106 0 0 0 0 0
400 NM_001033409 60 20 74 90 130
401 NM_009307 32 9 96 16 107
402 NM_001291015 0 0 0 0 0
403 NM_177642 0 0 0 0 2
404 NM_030676 0 0 0 0 0
405 NM_001159769 0 0 0 0 1
406 NM_011210 0 0 0 0 0
407 NM_001111316 0 0 0 0 0
408 NM_001268286 0 0 0 0 0
409 NM_181347 0 0 0 0 0
410 NM_001166501 0 1 0 1 2
411 NM_133239 208 108 490 318 369
412 NR_040455 0 0 0 0 0
413 NM_001081027 0 0 0 0 0
414 NR_040604 0 0 0 0 0
415 NM_020025 4 0 0 0 0
416 NM_013835 246 273 188 245 183
417 NM_145991 821 697 1000 793 573
418 NR_110891 0 0 0 0 0
419 NM_001290269 0 0 0 0 0
420 NM_153171 0 0 0 0 0
421 NM_001145807 0 0 0 0 0
422 NM_153539 0 0 0 0 0
423 NM_008869 0 79 0 0 0
424 NM_001110146 0 0 0 0 0
425 NM_024458 0 0 0 0 0
426 NM_001159730 0 0 0 0 0
427 NR_040603 0 0 0 0 0
428 NM_021400 1 1 7 7 0
429 NM_001024720 0 0 0 0 0
430 NM_197990 349 280 349 230 506
431 NM_025819 6926 9248 5296 3462 3625
432 NM_022018 25 1 32 0 8
433 NM_001039644 217 371 78 95 129
434 NM_177756 203 343 319 359 411
435 NM_175460 333 338 138 59 60
436 NM_016846 27 110 71 73 43
437 NM_010877 0 6 24 0 0
438 NM_007842 43 70 63 14 8
439 NR_108050 0 0 0 0 0
440 NR_046171 0 0 0 0 0
441 NM_009782 47 18 63 2 76
442 NM_011273 954 1596 2136 1912 1242
443 NM_021433 2003 3664 2262 1593 1624
444 NM_177838 0 0 0 0 0
445 NM_001145781 188 97 300 252 182
446 NM_001277730 0 0 0 0 0
447 NM_028250 8 1 79 41 47
448 NM_001039184 229 224 433 213 354
449 NM_001134741 3 5 6 3 13
450 NM_026683 0 0 0 0 0
451 NM_023141 0 9 0 24 12
452 NR_027640 1 0 0 0 0
453 NM_177644 242 184 374 216 270
454 NM_001159968 0 0 0 0 0
455 NM_001159965 0 0 0 0 0
456 NM_001159967 0 0 0 0 0
457 NM_001159966 0 0 0 0 0
458 NM_023884 0 0 0 0 0
459 NM_001085376 89 10 30 92 33
460 NM_011931 10995 17421 17175 16469 13094
461 NM_009786 55 48 26 42 34
462 NM_001038621 529 1119 1262 430 645
463 NR_038031 0 0 0 0 0
464 NR_038030 0 0 0 0 0
465 NM_001162896 0 0 0 0 0
466 NM_001039482 112 253 251 118 90
467 NM_080844 2371 2011 1696 1597 1424
468 NM_001038619 0 0 0 0 0
469 NM_172646 0 0 0 0 0
470 NM_008030 37 246 100 70 108
471 NM_011347 2140 2439 2125 2057 1415
472 NM_010629 27 17 98 36 61
473 NM_001293313 0 0 0 0 0
474 NM_138314 0 0 0 0 0
475 NM_001081126 2 0 0 0 2
476 NM_028759 133 131 184 253 450
477 NM_145512 241 452 271 523 436
478 NM_175296 21 72 1183 333 1260
479 NM_001164306 0 14 12 0 7
480 NM_001160049 0 0 0 0 0
481 NM_001033344 0 0 0 0 0
482 NM_198932 0 0 0 0 0
483 NM_011137 0 0 0 0 0
484 NM_030724 61 31 592 463 1066
485 NM_033652 6 10 76 34 21
486 NM_175461 0 0 0 0 0
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488 NM_001160262 0 0 0 0 0
489 NM_183355 0 0 0 0 0
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492 NM_001291508 0 0 0 0 0
493 NM_023284 8286 10536 12399 7957 7008
494 NM_133806 1017 1697 1226 773 624
495 NM_001081304 3522 4423 2308 2023 1835
496 NM_001198955 1615 2689 1879 1141 1077
497 NM_001109985 145 54 48 46 53
498 NM_027528 2 0 0 0 0
499 NM_011070 1429 1183 1293 1140 902
500 NM_013489 0 0 0 0 0