Mercurial > repos > artbio > fishertest

changeset 3:4b76708c6b95 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/fisher_test commit afc67da70753a5808ade516f71e9bf133efb3268
author artbio
date Sat, 14 Oct 2023 22:59:13 +0000
parents 8052d037517f
children
files fisher_test.xml
diffstat 1 files changed, 10 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/fisher_test.xml	Wed Mar 17 22:08:40 2021 +0000
+++ b/fisher_test.xml	Sat Oct 14 22:59:13 2023 +0000
@@ -1,7 +1,7 @@
-<tool id="fishertest" name="Fisher's exact test" version="2.22.0+galaxy0">
+<tool id="fishertest" name="Fisher's exact test" version="2.32.0+galaxy0">
 	<description>on two gene hit lists</description>
         <requirements>
-            <requirement type="package" version="2.22.0">bioconductor-qvalue</requirement>
+            <requirement type="package" version="2.32.0">bioconductor-qvalue</requirement>
         </requirements>
         <command><![CDATA[
             Rscript '$fisher_test' "\${GALAXY_SLOTS:-1}"
@@ -56,13 +56,17 @@
 
 **What it does**
 
-Runs Fisher's exact test for testing the null of independence of rows and columns in a contingency table of two columns.
+Runs Fisher's exact test for testing the null of independence of rows and columns
+in a contingency table of two columns.
 
-p.pvalues: the chance of getting this data if it is independent between columns (false negative); the p-value.
+p.pvalues: the chance of getting this data if it is independent between columns
+(false negative); the p-value.
 
-q.qvalues: FDR (Faslse Detection Rate) adjusted p-values; a q-value of 0.05 implies that 5% of significant tests will result in false positives.
+q.qvalues: FDR (Faslse Detection Rate) adjusted p-values;
+a q-value of 0.05 implies that 5% of significant tests will result in false positives.
 
-Be aware that this test does not take into account the biological noise that would be visible if replicates were available.
+Be aware that this test does not take into account the biological noise
+that would be visible if replicates were available.
 
 
 </help>