Mercurial > repos > artbio > gsc_center_scale

comparison center_scale.xml @ 1:a96cc346819c draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_center_scale commit 7865eb7eb9d862e9967fe519d28df705d973fbaf
author artbio
date Fri, 12 Jul 2019 11:44:50 -0400
parents bcbd7179d8ec
children 163befe5f05b
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0:bcbd7179d8ec 1:a96cc346819c
1 <tool id="center_scale" name="Center or scale (standardize) data" version="0.9.0"> 1 <tool id="center_scale" name="Center or scale (standardize) data" version="0.9.5">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.6.0">r-optparse</requirement> 4 <requirement type="package" version="1.6.0">r-optparse</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
43 <outputs> 43 <outputs>
44 <data name="output" format="tabular" label="scale ${on_string}" /> 44 <data name="output" format="tabular" label="scale ${on_string}" />
45 </outputs> 45 </outputs>
46 <tests> 46 <tests>
47 <test> 47 <test>
48 <param name="input" value="mini.data.counts.tsv" ftype="tabular"/> 48 <param name="input" value="fulldata.tsv" ftype="tabular"/>
49 <param name="scale" value="TRUE"/>
50 <param name="center" value="TRUE"/>
49 <output name="output" file="full_standardize.tab" ftype="tabular"/> 51 <output name="output" file="full_standardize.tab" ftype="tabular"/>
50 </test> 52 </test>
51 <test> 53 <test>
52 <param name="input" value="mini.data.counts.tsv" ftype="tabular"/> 54 <param name="input" value="fulldata.tsv" ftype="tabular"/>
53 <param name="scale" value="FALSE"/> 55 <param name="scale" value="FALSE"/>
56 <param name="center" value="TRUE"/>
54 <output name="output" file="full_center.tab" ftype="tabular"/> 57 <output name="output" file="full_center.tab" ftype="tabular"/>
55 </test> 58 </test>
56 <test> 59 <test>
57 <param name="input" value="mini.data.counts.tsv" ftype="tabular" /> 60 <param name="input" value="fulldata.tsv" ftype="tabular"/>
61 <param name="scale" value="TRUE"/>
62 <param name="center" value="FALSE"/>
63 <output name="output" file="full_scale.tab" ftype="tabular"/>
64 </test>
65 <test>
66 <param name="input" value="fulldata.tsv" ftype="tabular" />
67 <param name="scale" value="TRUE"/>
68 <param name="center" value="TRUE"/>
58 <param name="factor_options" value="TRUE" /> 69 <param name="factor_options" value="TRUE" />
59 <param name="file" value="mini.data.factor.tsv" ftype="tabular" /> 70 <param name="file" value="fulldata.map.tsv" ftype="tabular" />
60 <output name="output" file="group_standardize.tab" ftype="tabular"/> 71 <output name="output" file="group_standardize.tab" ftype="tabular"/>
61 </test> 72 </test>
62 <test> 73 <test>
63 <param name="input" value="mini.data.counts.tsv" ftype="tabular" /> 74 <param name="input" value="fulldata.tsv" ftype="tabular" />
64 <param name="scale" value="FALSE"/> 75 <param name="scale" value="FALSE"/>
76 <param name="center" value="TRUE"/>
65 <param name="factor_options" value="TRUE" /> 77 <param name="factor_options" value="TRUE" />
66 <param name="file" value="mini.data.factor.tsv" ftype="tabular" /> 78 <param name="file" value="fulldata.map.tsv" ftype="tabular" />
67 <output name="output" file="group_center.tab" ftype="tabular"/> 79 <output name="output" file="group_center.tab" ftype="tabular"/>
80 </test>
81 <test>
82 <param name="input" value="fulldata.tsv" ftype="tabular" />
83 <param name="scale" value="TRUE"/>
84 <param name="center" value="FALSE"/>
85 <param name="factor_options" value="TRUE" />
86 <param name="file" value="fulldata.map.tsv" ftype="tabular" />
87 <output name="output" file="group_scale.tab" ftype="tabular"/>
68 </test> 88 </test>
69 </tests> 89 </tests>
70 <help> 90 <help>
71 91
72 **What it does** 92 **What it does**