Mercurial > repos > artbio > manta

comparison test-data/conf_file_2.ini @ 7:555971edd46e draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/manta commit 569d2234f8a576d5c4fdae120a32418c50436ac2
author artbio
date Tue, 20 Feb 2024 08:31:27 +0000
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6:cb5691381acb 7:555971edd46e
1 [manta]
2 referenceFasta = /dummy/path/to/genome.fa
3 enableRemoteReadRetrievalForInsertionsInGermlineCallingModes = 1
4 minPassSomaticScore = 30
5 minSomaticScore = 10
6 minCandidateVariantSize = 8
7 minPassDiploidVariantScore = 20
8 useOverlapPairEvidence = 0
9 minPassDiploidGTScore = 15
10 graphNodeMaxEdgeCount = 10
11 minEdgeObservations = 3
12 minDiploidVariantScore = 10
13 minCandidateSpanningCount = 3
14 enableRemoteReadRetrievalForInsertionsInCancerCallingModes = 0
15 rnaMinCandidateVariantSize = 1000
16 minScoredVariantSize = 50