Mercurial > repos > artbio > manta

diff test-data/conf_file_2.ini @ 7:555971edd46e draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/manta commit 569d2234f8a576d5c4fdae120a32418c50436ac2
author artbio
date Tue, 20 Feb 2024 08:31:27 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/conf_file_2.ini	Tue Feb 20 08:31:27 2024 +0000
@@ -0,0 +1,16 @@
+[manta]
+referenceFasta = /dummy/path/to/genome.fa
+enableRemoteReadRetrievalForInsertionsInGermlineCallingModes = 1
+minPassSomaticScore = 30
+minSomaticScore = 10
+minCandidateVariantSize = 8
+minPassDiploidVariantScore = 20
+useOverlapPairEvidence = 0
+minPassDiploidGTScore = 15
+graphNodeMaxEdgeCount = 10
+minEdgeObservations = 3
+minDiploidVariantScore = 10
+minCandidateSpanningCount = 3
+enableRemoteReadRetrievalForInsertionsInCancerCallingModes = 0
+rnaMinCandidateVariantSize = 1000
+minScoredVariantSize = 50