Mercurial > repos > artbio > mutational_patterns

annotate test-data/F.vcf @ 4:7ba08c826888 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit e2d6ed12516e1bd24071962a0dfe0220cc348f3c"
author artbio
date Mon, 05 Oct 2020 19:29:42 +0000
parents aea952be68cb
children
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aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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1 ##fileformat=VCFv4.2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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2 ##FILTER=<ID=PASS,Description="All filters passed">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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3 ##reference=hg38
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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4 ##source=varscan.py
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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5 ##contig=<ID=chr1,length=248956422>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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6 ##contig=<ID=chr10,length=133797422>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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7 ##contig=<ID=chr11,length=135086622>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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8 ##contig=<ID=chr12,length=133275309>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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9 ##contig=<ID=chr13,length=114364328>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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10 ##contig=<ID=chr14,length=107043718>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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11 ##contig=<ID=chr15,length=101991189>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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12 ##contig=<ID=chr16,length=90338345>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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13 ##contig=<ID=chr17,length=83257441>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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14 ##contig=<ID=chr18,length=80373285>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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15 ##contig=<ID=chr19,length=58617616>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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16 ##contig=<ID=chr2,length=242193529>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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17 ##contig=<ID=chr20,length=64444167>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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18 ##contig=<ID=chr21,length=46709983>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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19 ##contig=<ID=chr22,length=50818468>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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20 ##contig=<ID=chr3,length=198295559>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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21 ##contig=<ID=chr4,length=190214555>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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22 ##contig=<ID=chr5,length=181538259>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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23 ##contig=<ID=chr6,length=170805979>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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24 ##contig=<ID=chr7,length=159345973>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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25 ##contig=<ID=chr8,length=145138636>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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26 ##contig=<ID=chr9,length=138394717>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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27 ##contig=<ID=chrM,length=16569>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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28 ##contig=<ID=chrX,length=156040895>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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29 ##contig=<ID=chrY,length=57227415>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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30 ##filter="SOMATIC"
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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31 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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32 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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33 ##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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34 ##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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35 ##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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36 ##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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37 ##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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38 ##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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39 ##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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40 ##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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41 ##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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42 ##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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43 ##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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44 ##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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45 ##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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46 ##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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47 ##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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48 ##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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49 ##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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50 ##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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51 ##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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52 ##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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53 ##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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54 ##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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55 ##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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56 ##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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57 ##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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58 ##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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59 ##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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60 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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61 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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62 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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63 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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64 ##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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65 ##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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66 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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67 chr1 167967 . G A 0 PASS DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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68 chr1 271578 . A AT 0 PASS DP=69;GPV=1;SPV=0.012429;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,5:7,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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69 chr1 636494 . A G 0 PASS DP=113;GPV=1;SPV=0.031633;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:47,13:24,9:23,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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70 chr1 996625 . A G 0 PASS DP=43;GPV=1;SPV=0.083867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:19,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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71 chr1 1644921 . A G 0 PASS DP=75;GPV=1;SPV=0.045371;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:16,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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72 chr1 1864314 . C CAAAA 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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73 chr1 1976870 . C CAG 0 PASS DP=47;GPV=1;SPV=0.00016042;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,16:2,6:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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74 chr1 2142262 . A C 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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parents:
diff changeset
75 chr1 2913844 . C G 0 PASS DP=75;GPV=1;SPV=4.1392e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:14,6:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
76 chr1 3181193 . C T 0 PASS DP=50;GPV=1;SPV=0.024399;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:5,5:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
77 chr1 4251782 . A ATTTTTTT 0 PASS DP=33;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:9,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
78 chr1 5606389 . A AATATATATATATAT 0 PASS DP=27;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:2,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
79 chr1 5732600 . A AG 0 PASS DP=31;GPV=1;SPV=0.0043505;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
80 chr1 7051663 . C CTGCCAGGACAGACTCATCCCTGTT 0 PASS DP=55;GPV=1;SPV=0.031156;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
81 chr1 8167511 . GCACA G 0 PASS DP=26;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:4,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
82 chr1 8233826 . A ATATATTTT 0 PASS DP=16;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
83 chr1 8501213 . G A 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:3,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
84 chr1 8647643 . G A 0 PASS DP=51;GPV=1;SPV=0.048962;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,5:8,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
85 chr1 9647481 . A AATTATTATT 0 PASS DP=46;GPV=1;SPV=0.0046297;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:3,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
86 chr1 9916882 . G A 0 PASS DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
87 chr1 10583224 . C CT 0 PASS DP=39;GPV=1;SPV=0.022127;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
88 chr1 10616234 . G A 0 PASS DP=58;GPV=1;SPV=3.9275e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:7,10:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
89 chr1 11045998 . C T 0 PASS DP=71;GPV=1;SPV=0.00030325;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:10,6:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
90 chr1 11771345 . C A 0 PASS DP=58;GPV=1;SPV=3.4859e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:13,9:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
91 chr1 12381912 . C CTTTCT 0 PASS DP=45;GPV=1;SPV=0.022593;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:1,4:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
92 chr1 12871201 . C CT 0 PASS DP=61;GPV=1;SPV=0.018007;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,3:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
93 chr1 12881560 . G A 0 PASS DP=63;GPV=1;SPV=0.013032;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
94 chr1 12947985 . CTACAAAAA C 0 PASS DP=76;GPV=1;SPV=0.0010116;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:9,3:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
95 chr1 13040570 . C T 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
96 chr1 13168970 . G A 0 PASS DP=26;GPV=1;SPV=0.020006;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
97 chr1 13198698 . A G 0 PASS DP=45;GPV=1;SPV=0.024875;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,4:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
98 chr1 13199161 . C A 0 PASS DP=47;GPV=1;SPV=0.03148;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,6:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
99 chr1 13217209 . G A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
100 chr1 13341194 . G A 0 PASS DP=90;GPV=1;SPV=0.0036109;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:21,6:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
101 chr1 13926652 . T TA 0 PASS DP=47;GPV=1;SPV=0.00036335;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
102 chr1 14528362 . G A 0 PASS DP=43;GPV=1;SPV=0.057503;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,8:6,3:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
103 chr1 15194917 . CT C 0 PASS DP=39;GPV=1;SPV=0.0074752;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,11:5,8:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
104 chr1 15293726 . C A 0 PASS DP=42;GPV=1;SPV=0.024383;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,3:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
105 chr1 16311503 . A AATAT 0 PASS DP=35;GPV=1;SPV=0.083772;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:9,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
106 chr1 16631115 . G A 0 PASS DP=226;GPV=1;SPV=0.0019297;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:81,24:42,14:39,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
107 chr1 16656105 . G A 0 PASS DP=37;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:11,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
108 chr1 16690451 . A T 0 PASS DP=69;GPV=1;SPV=0.0079357;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,12:8,3:17,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
109 chr1 16732665 . A G 0 PASS DP=162;GPV=1;SPV=0.011554;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:60,10:37,8:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
110 chr1 16733940 . C A 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
111 chr1 16746403 . C A 0 PASS DP=54;GPV=1;SPV=0.018572;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:8,5:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
112 chr1 16755063 . G A 0 PASS DP=227;GPV=1;SPV=6.2457e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:98,13:53,5:45,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
113 chr1 16849895 . G A 0 PASS DP=76;GPV=1;SPV=0.019869;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:17,8:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
114 chr1 16860384 . C G 0 PASS DP=98;GPV=1;SPV=0.0059855;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:19,3:20,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
115 chr1 16896326 . A C 0 PASS DP=113;GPV=1;SPV=0.0087261;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:16,3:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
116 chr1 17296935 . A G 0 PASS DP=56;GPV=1;SPV=0.0067299;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
117 chr1 17822187 . G A 0 PASS DP=73;GPV=1;SPV=0.0017389;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:8,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
118 chr1 18611271 . GAGGA G 0 PASS DP=28;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:6,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
119 chr1 21699192 . AT A 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
120 chr1 21977914 . GC G 0 PASS DP=47;GPV=1;SPV=0.0028915;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:5,2:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
121 chr1 24266066 . T TTGGA 0 PASS DP=39;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:7,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
122 chr1 24407443 . A AT 0 PASS DP=52;GPV=1;SPV=0.0010171;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,10:6,8:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
123 chr1 26214945 . A C 0 PASS DP=42;GPV=1;SPV=0.21465;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,5:5,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
124 chr1 27824672 . C CT 0 PASS DP=21;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
125 chr1 28923111 . C T 0 PASS DP=35;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,3:3,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
126 chr1 33493334 . G T 0 PASS DP=58;GPV=1;SPV=4.8916e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:8,4:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
127 chr1 33510173 . A T 0 PASS DP=19;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
128 chr1 33890232 . C CT 0 PASS DP=43;GPV=1;SPV=0.0081527;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:9,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
129 chr1 34128594 . G A 0 PASS DP=66;GPV=1;SPV=0.001651;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:12,4:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
130 chr1 34959242 . CA C 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
131 chr1 35207403 . AT A 0 PASS DP=30;GPV=1;SPV=0.0014564;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:6,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
132 chr1 36806360 . G A 0 PASS DP=62;GPV=1;SPV=2.6735e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:9,6:11,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
133 chr1 37427639 . G GAAGAAAGAAAGAAAGA 0 PASS DP=23;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,4:2,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
134 chr1 38514430 . C CT 0 PASS DP=31;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:5,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
135 chr1 39021177 . C T 0 PASS DP=32;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,3:0,0:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
136 chr1 39021181 . C T 0 PASS DP=30;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,2:0,0:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
137 chr1 39045665 . G A 0 PASS DP=25;GPV=1;SPV=0.040458;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,1:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
138 chr1 41260924 . T C 0 PASS DP=44;GPV=1;SPV=0.06057;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
139 chr1 42131047 . CAAAA C 0 PASS DP=38;GPV=1;SPV=0.035721;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
140 chr1 43813905 . A G 0 PASS DP=60;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:1,2:0,0:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
141 chr1 43882975 . A AT 0 PASS DP=44;GPV=1;SPV=0.023174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:9,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
142 chr1 44006586 . C CA 0 PASS DP=37;GPV=1;SPV=0.15398;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:12,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
143 chr1 45539020 . G A 0 PASS DP=68;GPV=1;SPV=0.064803;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,6:10,3:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
144 chr1 46212281 . A AT 0 PASS DP=60;GPV=1;SPV=0.0093079;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,6:13,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
145 chr1 46242260 . G T 0 PASS DP=36;GPV=1;SPV=0.030805;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:11,7:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
146 chr1 46700982 . A AGT 0 PASS DP=33;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
147 chr1 48192907 . A G 0 PASS DP=29;GPV=1;SPV=0.010572;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
148 chr1 51933945 . G A 0 PASS DP=75;GPV=1;SPV=8.4086e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:9,8:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
149 chr1 52783985 . C CGT 0 PASS DP=48;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:12,6:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
150 chr1 54985221 . G A 0 PASS DP=54;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
151 chr1 55030784 . C A 0 PASS DP=49;GPV=1;SPV=0.079204;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:12,4:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
152 chr1 55941187 . G A 0 PASS DP=47;GPV=1;SPV=0.018827;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
153 chr1 56227866 . T TACAC 0 PASS DP=42;GPV=1;SPV=0.017469;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
154 chr1 57139968 . T A 0 PASS DP=58;GPV=1;SPV=0.00037187;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,5:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
155 chr1 59805102 . A ATG 0 PASS DP=48;GPV=1;SPV=0.0041795;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:12,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
156 chr1 59860777 . C CT 0 PASS DP=39;GPV=1;SPV=0.022366;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
157 chr1 60301295 . T TTGTGTG 0 PASS DP=29;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
158 chr1 63283765 . A AAG 0 PASS DP=34;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
159 chr1 63817884 . G A 0 PASS DP=69;GPV=1;SPV=1.4829e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,7:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
160 chr1 64268120 . A AAAAAAAC 0 PASS DP=39;GPV=1;SPV=0.012328;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:4,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
161 chr1 64398280 . AAG A 0 PASS DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
162 chr1 65038938 . T TTGTGTGTGTGTG 0 PASS DP=51;GPV=1;SPV=0.046888;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
163 chr1 65518871 . CTT C 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
164 chr1 65731219 . G A 0 PASS DP=60;GPV=1;SPV=0.0045987;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
165 chr1 65736482 . T C 0 PASS DP=73;GPV=1;SPV=0.00020766;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,2:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
166 chr1 68406582 . T A 0 PASS DP=55;GPV=1;SPV=0.040021;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,5:7,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
167 chr1 71928161 . C T 0 PASS DP=30;GPV=1;SPV=0.0079095;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:3,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
168 chr1 74111090 . G A 0 PASS DP=48;GPV=1;SPV=0.0044219;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:7,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
169 chr1 74448376 . G T 0 PASS DP=45;GPV=1;SPV=0.0047587;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
170 chr1 77533509 . CAAAAAA C 0 PASS DP=35;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:6,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
171 chr1 77765735 . C CT 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
172 chr1 77793626 . AT A 0 PASS DP=44;GPV=1;SPV=0.2759;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:13,2:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
173 chr1 78005365 . CT C 0 PASS DP=59;GPV=1;SPV=0.028465;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:15,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
174 chr1 79202929 . AC A 0 PASS DP=37;GPV=1;SPV=0.026676;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,1:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
175 chr1 80497577 . TA T 0 PASS DP=75;GPV=1;SPV=4.8738e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:10,11:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
176 chr1 81825657 . C A 0 PASS DP=32;GPV=1;SPV=0.0096686;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:3,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
177 chr1 82627810 . C T 0 PASS DP=33;GPV=1;SPV=0.16484;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,2:1,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
178 chr1 83241791 . C CATAT 0 PASS DP=35;GPV=1;SPV=0.19094;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
179 chr1 83248504 . A AT 0 PASS DP=81;GPV=1;SPV=0.0060587;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:18,12:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
180 chr1 83390671 . A C 0 PASS DP=73;GPV=1;SPV=0.011442;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:12,6:21,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
181 chr1 83716701 . C G 0 PASS DP=81;GPV=1;SPV=2.4826e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:12,9:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
182 chr1 84418338 . A C 0 PASS DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
183 chr1 86985509 . CAT C 0 PASS DP=37;GPV=1;SPV=0.016414;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:3,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
184 chr1 88567358 . C CA 0 PASS DP=29;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,7:5,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
185 chr1 91040277 . T C 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,6:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
186 chr1 95681557 . G T 0 PASS DP=60;GPV=1;SPV=3.7162e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:6,6:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
187 chr1 96650554 . T TTGTGTGTG 0 PASS DP=46;GPV=1;SPV=0.031354;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:6,1:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
188 chr1 98112422 . TAA T 0 PASS DP=16;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:2,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
189 chr1 99227734 . C A 0 PASS DP=65;GPV=1;SPV=0.00036745;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:15,5:12,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
190 chr1 99822926 . T A 0 PASS DP=48;GPV=1;SPV=0.017056;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:5,1:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
191 chr1 100283934 . AG A 0 PASS DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
192 chr1 100394111 . C T 0 PASS DP=49;GPV=1;SPV=0.14851;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
193 chr1 101306166 . C CT 0 PASS DP=28;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
194 chr1 101529118 . G GAC 0 PASS DP=60;GPV=1;SPV=0.00010085;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,5:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
195 chr1 102577728 . C T 0 PASS DP=58;GPV=1;SPV=7.6466e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:7,10:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
196 chr1 102810163 . C CAA 0 PASS DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
197 chr1 103792409 . C T 0 PASS DP=48;GPV=1;SPV=0.0010691;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:7,8:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
198 chr1 104883863 . C T 0 PASS DP=60;GPV=1;SPV=0.00044723;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:16,5:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
199 chr1 105455897 . AT A 0 PASS DP=67;GPV=1;SPV=6.0123e-06;SS=2;SSC=52;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
200 chr1 106599829 . C CTCTCTCTCTA 0 PASS DP=23;GPV=1;SPV=0.035088;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:3,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
201 chr1 108164778 . T TTG 0 PASS DP=41;GPV=1;SPV=0.026993;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
202 chr1 110808911 . T A 0 PASS DP=21;GPV=1;SPV=0.0089783;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
203 chr1 111632921 . C CA 0 PASS DP=38;GPV=1;SPV=0.11976;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:14,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
204 chr1 112383177 . C CA 0 PASS DP=34;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,8:6,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
205 chr1 112918065 . T G 0 PASS DP=64;GPV=1;SPV=0.00086701;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:7,5:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
206 chr1 114716126 . C T 0 PASS DP=60;GPV=1;SPV=0.00056474;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:6,5:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
207 chr1 115766865 . TGATA T 0 PASS DP=50;GPV=1;SPV=0.0020828;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,10:3,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
208 chr1 118287981 . T C 0 PASS DP=65;GPV=1;SPV=0.046146;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:10,5:6,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
209 chr1 118682202 . ATG A 0 PASS DP=33;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,8:2,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
210 chr1 121753005 . C G 0 PASS DP=60;GPV=1;SPV=0.036872;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:6,3:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
211 chr1 121773480 . TC T 0 PASS DP=68;GPV=1;SPV=0.038637;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:9,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
212 chr1 122138561 . T A 0 PASS DP=43;GPV=1;SPV=0.013215;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
213 chr1 122258262 . G C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
214 chr1 124704670 . G A 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
215 chr1 124798780 . C T 0 PASS DP=40;GPV=1;SPV=0.065489;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:17,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
216 chr1 124872883 . A T 0 PASS DP=77;GPV=1;SPV=0.010192;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:1,1:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
217 chr1 124906269 . A T 0 PASS DP=191;GPV=1;SPV=0.0092839;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:76,21:41,6:35,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
218 chr1 124921389 . G C 0 PASS DP=21;GPV=1;SPV=0.14706;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,3:2,1:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
219 chr1 124924096 . G T 0 PASS DP=22;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:8,3:6,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
220 chr1 125094391 . T C 0 PASS DP=185;GPV=1;SPV=0.016143;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:83,17:45,7:38,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
221 chr1 143217456 . T A 0 PASS DP=14662;GPV=1;SPV=0.048859;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7342:6526,739:1761,246:4765,493
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
222 chr1 143217457 . C A 0 PASS DP=13749;GPV=1;SPV=0.0086744;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:6854:6080,740:1673,258:4407,482
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
223 chr1 143241404 . A G 0 PASS DP=194;GPV=1;SPV=0.0089788;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:62,19:58,18:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
224 chr1 143256117 . A T 0 PASS DP=1640;GPV=1;SPV=0.03986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:847:755,92:200,20:555,72
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
225 chr1 143334185 . C T 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
226 chr1 143388651 . ATAT A 0 PASS DP=112;GPV=1;SPV=0.0036516;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:28,9:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
227 chr1 143509985 . A G 0 PASS DP=71;GPV=1;SPV=0.0045966;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:4,1:26,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
228 chr1 143729574 . A C 0 PASS DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
229 chr1 143739631 . A T 0 PASS DP=41;GPV=1;SPV=0.017469;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,1:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
230 chr1 144104657 . C T 0 PASS DP=189;GPV=1;SPV=0.037546;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:74,13:34,5:40,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
231 chr1 144105904 . G A 0 PASS DP=81;GPV=1;SPV=0.03525;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:14,8:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
232 chr1 144517710 . C T 0 PASS DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,1:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
233 chr1 144529624 . G A 0 PASS DP=43;GPV=1;SPV=0.018956;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
234 chr1 144549585 . TA T 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
235 chr1 145227356 . A G 0 PASS DP=57;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
236 chr1 145257749 . A G 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
237 chr1 145602319 . A AT 0 PASS DP=32;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,12:3,4:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
238 chr1 146129855 . T C 0 PASS DP=54;GPV=1;SPV=2.3666e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,2:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
239 chr1 146626712 . G C 0 PASS DP=68;GPV=1;SPV=0.029248;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:20,3:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
240 chr1 148067460 . C T 0 PASS DP=38;GPV=1;SPV=0.0018071;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
241 chr1 148106039 . GA G 0 PASS DP=53;GPV=1;SPV=0.093588;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
242 chr1 148556832 . C CCCTT 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
243 chr1 148869643 . C G 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
244 chr1 148893065 . C CTGTG 0 PASS DP=23;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,6:0,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
245 chr1 148906381 . G C 0 PASS DP=22;GPV=1;SPV=0.020124;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:1,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
246 chr1 149801515 . GAAGT G 0 PASS DP=37;GPV=1;SPV=0.023812;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
247 chr1 150088434 . A AATATATAT 0 PASS DP=32;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
248 chr1 150241670 . C CT 0 PASS DP=45;GPV=1;SPV=0.034961;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:8,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
249 chr1 150312297 . G T 0 PASS DP=66;GPV=1;SPV=0.020244;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:13,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
250 chr1 150741885 . G A 0 PASS DP=73;GPV=1;SPV=0.19203;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,4:15,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
251 chr1 153202842 . C T 0 PASS DP=47;GPV=1;SPV=0.021442;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:8,5:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
252 chr1 153877887 . TA T 0 PASS DP=43;GPV=1;SPV=0.024795;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
253 chr1 154304368 . GT G 0 PASS DP=25;GPV=1;SPV=0.014142;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
254 chr1 157035978 . AAT A 0 PASS DP=33;GPV=1;SPV=0.036101;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
255 chr1 158444953 . CTCTT C 0 PASS DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
256 chr1 158984028 . G GT 0 PASS DP=39;GPV=1;SPV=0.0036613;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,10:3,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
257 chr1 159126648 . C CAA 0 PASS DP=37;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,8:3,7:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
258 chr1 160335883 . CA C 0 PASS DP=29;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:1,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
259 chr1 160948627 . C CT 0 PASS DP=36;GPV=1;SPV=0.010552;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
260 chr1 161142085 . T TAAAA 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
261 chr1 161543514 . T C 0 PASS DP=90;GPV=1;SPV=0.044015;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:16,6:30,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
262 chr1 161594229 . G A 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
263 chr1 161746600 . C CTCTCTCTCTT 0 PASS DP=43;GPV=1;SPV=0.015516;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:5,1:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
264 chr1 162467966 . CT C 0 PASS DP=27;GPV=1;SPV=0.0057228;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:5,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
265 chr1 162693713 . G C 0 PASS DP=49;GPV=1;SPV=0.00024212;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:5,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
266 chr1 163328474 . A C 0 PASS DP=57;GPV=1;SPV=0.00037903;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,6:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
267 chr1 165020483 . A G 0 PASS DP=35;GPV=1;SPV=0.015907;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
268 chr1 166896635 . C CT 0 PASS DP=30;GPV=1;SPV=0.005305;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
269 chr1 167558484 . C CT 0 PASS DP=40;GPV=1;SPV=0.0028678;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:6,7:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
270 chr1 168009472 . C T 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
271 chr1 168440410 . A G 0 PASS DP=35;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
272 chr1 170282189 . T TA 0 PASS DP=46;GPV=1;SPV=0.018904;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,6:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
273 chr1 170933516 . A G 0 PASS DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
274 chr1 171045482 . G T 0 PASS DP=48;GPV=1;SPV=0.00039944;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,16:3,6:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
275 chr1 171681188 . C T 0 PASS DP=41;GPV=1;SPV=0.020212;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
276 chr1 171694664 . G GAA 0 PASS DP=44;GPV=1;SPV=0.11996;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,4:13,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
277 chr1 171906127 . AT A 0 PASS DP=50;GPV=1;SPV=0.00011732;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
278 chr1 172872876 . T G 0 PASS DP=25;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
279 chr1 174136273 . T TTA 0 PASS DP=41;GPV=1;SPV=0.027859;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,6:9,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
280 chr1 174607239 . G A 0 PASS DP=63;GPV=1;SPV=0.0022162;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:16,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
281 chr1 174946916 . AAAT A 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
282 chr1 175417011 . AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG A 0 PASS DP=30;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
283 chr1 176042270 . C CA 0 PASS DP=35;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,9:7,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
284 chr1 176406395 . G A 0 PASS DP=55;GPV=1;SPV=0.0010863;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:6,3:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
285 chr1 178695925 . TA T 0 PASS DP=61;GPV=1;SPV=0.030658;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
286 chr1 182650202 . G A 0 PASS DP=70;GPV=1;SPV=3.9131e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,3:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
287 chr1 183166550 . C CAA 0 PASS DP=30;GPV=1;SPV=0.043423;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:10,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
288 chr1 185077375 . G C 0 PASS DP=49;GPV=1;SPV=0.005596;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:4,1:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
289 chr1 185454785 . C T 0 PASS DP=63;GPV=1;SPV=0.00025863;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:9,7:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
290 chr1 185655759 . ATG A 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:19,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
291 chr1 186628414 . C A 0 PASS DP=75;GPV=1;SPV=6.9826e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:17,7:9,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
292 chr1 187637839 . G A 0 PASS DP=50;GPV=1;SPV=0.014488;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:10,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
293 chr1 187827169 . G A 0 PASS DP=28;GPV=1;SPV=0.026923;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:1,11:1,2:0,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
294 chr1 188473743 . A AG 0 PASS DP=36;GPV=1;SPV=0.0094953;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,13:5,2:2,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
295 chr1 188805737 . C T 0 PASS DP=60;GPV=1;SPV=1.5288e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:7,11:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
296 chr1 188848105 . T G 0 PASS DP=35;GPV=1;SPV=0.035819;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
297 chr1 191806127 . ATTTG A 0 PASS DP=40;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
298 chr1 192627568 . TAA T 0 PASS DP=32;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,8:2,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
299 chr1 194088881 . T TTATCTATCTATC 0 PASS DP=50;GPV=1;SPV=0.008542;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:5,6:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
300 chr1 194698706 . C A 0 PASS DP=55;GPV=1;SPV=0.00026263;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
301 chr1 195004485 . A C 0 PASS DP=72;GPV=1;SPV=0.00017262;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,5:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
302 chr1 196806094 . C T 0 PASS DP=35;GPV=1;SPV=0.0057417;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
303 chr1 196904226 . C T 0 PASS DP=66;GPV=1;SPV=0.00011139;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:10,4:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
304 chr1 197365625 . TC T 0 PASS DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
305 chr1 199367532 . T G 0 PASS DP=27;GPV=1;SPV=0.0028686;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:4,6:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
306 chr1 200443192 . A ATT 0 PASS DP=37;GPV=1;SPV=0.00057632;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,11:5,5:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
307 chr1 200942179 . CA C 0 PASS DP=27;GPV=1;SPV=0.016908;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
308 chr1 202847186 . A ATTTTT 0 PASS DP=35;GPV=1;SPV=0.074026;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
309 chr1 202928823 . CT C 0 PASS DP=32;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,6:7,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
310 chr1 203330817 . CT C 0 PASS DP=30;GPV=1;SPV=0.024751;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
311 chr1 204195269 . CACAT C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
312 chr1 204195292 . A ACATATACG 0 PASS DP=33;GPV=1;SPV=0.018404;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:3,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
313 chr1 205884539 . CAT C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
314 chr1 207213830 . T C 0 PASS DP=17;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,3:0,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
315 chr1 207729251 . C CA 0 PASS DP=31;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,7:5,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
316 chr1 208845734 . C T 0 PASS DP=63;GPV=1;SPV=0.016895;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
317 chr1 210798040 . CT C 0 PASS DP=43;GPV=1;SPV=0.048497;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
318 chr1 212210694 . CT C 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
319 chr1 212224368 . C CAG 0 PASS DP=58;GPV=1;SPV=0.048094;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:9,2:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
320 chr1 213812952 . T A 0 PASS DP=58;GPV=1;SPV=0.0056882;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:5,3:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
321 chr1 214398606 . CCTG C 0 PASS DP=33;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
322 chr1 216165808 . G GT 0 PASS DP=42;GPV=1;SPV=0.0041486;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:10,9:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
323 chr1 218395611 . C CT 0 PASS DP=23;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
324 chr1 218482328 . A AT 0 PASS DP=31;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:3,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
325 chr1 218788920 . C T 0 PASS DP=57;GPV=1;SPV=0.00076774;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,2:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
326 chr1 222192151 . G A 0 PASS DP=54;GPV=1;SPV=0.00057068;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:14,5:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
327 chr1 222488201 . G A 0 PASS DP=53;GPV=1;SPV=0.0043971;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:13,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
328 chr1 222936762 . TAA T 0 PASS DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
329 chr1 224260699 . CT C 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
330 chr1 224711794 . C CA 0 PASS DP=33;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:6,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
331 chr1 226114622 . T C 0 PASS DP=31;GPV=1;SPV=0.0053554;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,3:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
332 chr1 226252318 . A G 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
333 chr1 226732102 . C CA 0 PASS DP=25;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:3,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
334 chr1 226795555 . C CTT 0 PASS DP=22;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:0,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
335 chr1 226886041 . T A 0 PASS DP=47;GPV=1;SPV=0.0069488;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:4,5:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
336 chr1 227726185 . T C 0 PASS DP=33;GPV=1;SPV=0.013278;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:6,8:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
337 chr1 228903868 . C T 0 PASS DP=65;GPV=1;SPV=6.6453e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:11,8:3,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
338 chr1 232424065 . C T 0 PASS DP=55;GPV=1;SPV=0.0058348;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:14,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
339 chr1 232496560 . C CAAA 0 PASS DP=43;GPV=1;SPV=0.021659;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:8,8:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
340 chr1 232849287 . CTT C 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
341 chr1 234623890 . A G 0 PASS DP=25;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:4,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
342 chr1 234786202 . C T 0 PASS DP=41;GPV=1;SPV=0.059099;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
343 chr1 236464427 . T C 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
344 chr1 238605947 . CAAAA C 0 PASS DP=27;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
345 chr1 238739107 . C A 0 PASS DP=50;GPV=1;SPV=0.0014624;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:12,6:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
346 chr1 240729885 . C CA 0 PASS DP=33;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:8,2:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
347 chr1 241235918 . G A 0 PASS DP=33;GPV=1;SPV=0.034545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
348 chr1 241327129 . A AG 0 PASS DP=22;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
349 chr1 241428779 . C CTT 0 PASS DP=16;GPV=1;SPV=0.46667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
350 chr1 242091832 . C T 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
351 chr1 242207816 . T TTA 0 PASS DP=21;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,6:0,2:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
352 chr1 242831901 . G A 0 PASS DP=31;GPV=1;SPV=0.23569;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,5:10,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
353 chr1 245443291 . G A 0 PASS DP=35;GPV=1;SPV=0.02914;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
354 chr1 245612107 . A T 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
355 chr1 246232920 . T A 0 PASS DP=41;GPV=1;SPV=0.23453;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
356 chr1 247428109 . C CTG 0 PASS DP=89;GPV=1;SPV=0.0093304;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:21,5:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
357 chr1 248658775 . A C 0 PASS DP=72;GPV=1;SPV=0.023086;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
358 chr1 248942173 . G A 0 PASS DP=70;GPV=1;SPV=0.02714;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:21,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
359 chr10 201585 . T TACACACACACACACACACACACAC 0 PASS DP=28;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:5,4:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
360 chr10 347891 . G T 0 PASS DP=18;GPV=1;SPV=0.012987;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,5:0,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
361 chr10 348012 . C CCCCACACTCA 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:23,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
362 chr10 467539 . T A 0 PASS DP=53;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:33:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
363 chr10 2430663 . G A 0 PASS DP=29;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
364 chr10 2571322 . T C 0 PASS DP=45;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,3:2,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
365 chr10 2967703 . C CGT 0 PASS DP=32;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,7:6,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
366 chr10 3323486 . C CA 0 PASS DP=27;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:5,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
367 chr10 5370005 . G GTA 0 PASS DP=47;GPV=1;SPV=0.27607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,4:4,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
368 chr10 5398439 . A C 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
369 chr10 5610441 . A T 0 PASS DP=46;GPV=1;SPV=0.28571;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:2,2:0,0:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
370 chr10 5692149 . C CAAAA 0 PASS DP=42;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,9:8,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
371 chr10 5707654 . T TTC 0 PASS DP=22;GPV=1;SPV=0.01548;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:0,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
372 chr10 5998631 . G A 0 PASS DP=58;GPV=1;SPV=0.0022186;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,19:7,10:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
373 chr10 6402371 . C CA 0 PASS DP=32;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:8,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
374 chr10 6517588 . CTTTTT C 0 PASS DP=19;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:3,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
375 chr10 6876594 . T TCTCA 0 PASS DP=69;GPV=1;SPV=0.000999;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:0,10:0,6:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
376 chr10 8216268 . CTCTTTCTTTCTT C 0 PASS DP=31;GPV=1;SPV=0.033794;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:1,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
377 chr10 8696501 . G C 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
378 chr10 10743101 . C A 0 PASS DP=77;GPV=1;SPV=0.00016735;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
379 chr10 10857649 . G GTA 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
380 chr10 12056441 . C T 0 PASS DP=35;GPV=1;SPV=0.00071703;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:1,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
381 chr10 12226655 . GAT G 0 PASS DP=36;GPV=1;SPV=0.017674;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:5,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
382 chr10 12574497 . T TTTA 0 PASS DP=38;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:4,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
383 chr10 13789769 . ATG A 0 PASS DP=28;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:6,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
384 chr10 14417553 . C T 0 PASS DP=67;GPV=1;SPV=1.3691e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:13,7:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
385 chr10 15600251 . TA T 0 PASS DP=57;GPV=1;SPV=2.9244e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:8,8:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
386 chr10 15728097 . G A 0 PASS DP=62;GPV=1;SPV=4.9403e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,2:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
387 chr10 16324158 . A G 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
388 chr10 16652392 . C CAA 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:11,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
389 chr10 21770395 . CT C 0 PASS DP=30;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
390 chr10 24369179 . A ATGTG 0 PASS DP=40;GPV=1;SPV=0.0088484;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
391 chr10 24436757 . CAA C 0 PASS DP=21;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:5,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
392 chr10 24456706 . T A 0 PASS DP=40;GPV=1;SPV=0.003276;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
393 chr10 25983935 . G A 0 PASS DP=64;GPV=1;SPV=0.0017823;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:8,3:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
394 chr10 26721425 . C T 0 PASS DP=38;GPV=1;SPV=0.005667;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,2:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
395 chr10 27572311 . AT A 0 PASS DP=39;GPV=1;SPV=0.0025759;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:6,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
396 chr10 29329657 . ATCTC A 0 PASS DP=54;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,6:6,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
397 chr10 29445342 . GAGAGAA G 0 PASS DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
398 chr10 34724899 . G A 0 PASS DP=66;GPV=1;SPV=0.0058421;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:19,4:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
399 chr10 35196895 . G A 0 PASS DP=35;GPV=1;SPV=0.018501;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
400 chr10 37327549 . G A 0 PASS DP=69;GPV=1;SPV=7.0959e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:16,10:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
401 chr10 38621941 . C T 0 PASS DP=71;GPV=1;SPV=0.016232;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:17,2:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
402 chr10 38745197 . GATGAAATGAA G 0 PASS DP=61;GPV=1;SPV=0.028648;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:15,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
403 chr10 38930473 . G A 0 PASS DP=99;GPV=1;SPV=0.018934;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:20,6:25,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
404 chr10 38957246 . C T 0 PASS DP=356;GPV=1;SPV=0.047562;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:176:158,18:95,3:63,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
405 chr10 38966360 . C T 0 PASS DP=264;GPV=1;SPV=0.0056063;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:113,23:64,11:49,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
406 chr10 38966727 . T C 0 PASS DP=132;GPV=1;SPV=0.033863;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:20,5:34,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
407 chr10 39997897 . G T 0 PASS DP=309;GPV=1;SPV=0.0061832;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:123,16:52,4:71,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
408 chr10 40000624 . C A 0 PASS DP=231;GPV=1;SPV=0.030441;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:103,20:55,16:48,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
409 chr10 40608677 . A T 0 PASS DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:2,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
410 chr10 40706691 . G C 0 PASS DP=40;GPV=1;SPV=0.046847;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
411 chr10 40864302 . G A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
412 chr10 40920571 . T C 0 PASS DP=78;GPV=1;SPV=0.033517;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,6:11,1:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
413 chr10 40975414 . C G 0 PASS DP=78;GPV=1;SPV=0.012197;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:23,2:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
414 chr10 41135564 . T A 0 PASS DP=147;GPV=1;SPV=0.04186;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:64,12:57,11:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
415 chr10 41150961 . G C 0 PASS DP=56;GPV=1;SPV=0.032688;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
416 chr10 41202411 . C A 0 PASS DP=103;GPV=1;SPV=0.0087417;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:9,1:27,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
417 chr10 41232580 . T A 0 PASS DP=23;GPV=1;SPV=0.013999;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:7,5:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
418 chr10 41425591 . A T 0 PASS DP=289;GPV=1;SPV=0.0047975;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:124,15:11,3:113,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
419 chr10 41552857 . A T 0 PASS DP=57;GPV=1;SPV=0.023472;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
420 chr10 41552862 . T A 0 PASS DP=59;GPV=1;SPV=0.044988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
421 chr10 41562381 . T A 0 PASS DP=73;GPV=1;SPV=0.0034912;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:7,10:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
422 chr10 41562631 . T A 0 PASS DP=55;GPV=1;SPV=0.010634;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,2:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
423 chr10 41564142 . G A 0 PASS DP=104;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:19,4:24,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
424 chr10 41576755 . C G 0 PASS DP=92;GPV=1;SPV=0.032789;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:17,6:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
425 chr10 41713561 . C T 0 PASS DP=57;GPV=1;SPV=0.0042869;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:8,3:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
426 chr10 41864307 . A T 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
427 chr10 41912091 . G C 0 PASS DP=145;GPV=1;SPV=0.014084;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:66,17:29,11:37,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
428 chr10 42073656 . C G 0 PASS DP=654;GPV=1;SPV=0.012143;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:347:299,40:129,22:170,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
429 chr10 42073671 . T A 0 PASS DP=648;GPV=1;SPV=0.013281;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:334:287,47:131,26:156,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
430 chr10 42080556 . G T 0 PASS DP=821;GPV=1;SPV=0.04623;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:411:359,52:199,26:160,26
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
431 chr10 42103837 . G A 0 PASS DP=53;GPV=1;SPV=0.011867;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:15,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
432 chr10 42130049 . A T 0 PASS DP=353;GPV=1;SPV=0.0077328;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:151,17:105,13:46,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
433 chr10 42190895 . GAT G 0 PASS DP=27;GPV=1;SPV=0.014047;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
434 chr10 42227104 . C CTCA 0 PASS DP=49;GPV=1;SPV=0.049555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,2:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
435 chr10 42271021 . C G 0 PASS DP=157;GPV=1;SPV=0.0039034;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:58,16:26,7:32,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
436 chr10 43330621 . TA T 0 PASS DP=31;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
437 chr10 43729991 . AAG A 0 PASS DP=39;GPV=1;SPV=0.24625;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,4:12,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
438 chr10 44338700 . G A 0 PASS DP=48;GPV=1;SPV=2.3557e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,16:5,6:5,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
439 chr10 45507811 . G GA 0 PASS DP=41;GPV=1;SPV=0.03378;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:5,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
440 chr10 45695659 . C T 0 PASS DP=39;GPV=1;SPV=0.037203;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
441 chr10 45775775 . G A 0 PASS DP=50;GPV=1;SPV=0.0090384;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,3:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
442 chr10 46391919 . A G 0 PASS DP=63;GPV=1;SPV=0.053635;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:20,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
443 chr10 46411570 . C T 0 PASS DP=90;GPV=1;SPV=0.033847;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:12,6:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
444 chr10 46455528 . C A 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
445 chr10 46541273 . GT G 0 PASS DP=86;GPV=1;SPV=0.02442;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:8,1:26,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
446 chr10 46541275 . C CAG 0 PASS DP=89;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:8,1:28,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
447 chr10 47584258 . G T 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
448 chr10 47606142 . C T 0 PASS DP=57;GPV=1;SPV=0.017732;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:11,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
449 chr10 47995404 . C T 0 PASS DP=49;GPV=1;SPV=0.016464;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:13,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
450 chr10 48806215 . G T 0 PASS DP=82;GPV=1;SPV=4.3619e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:7,8:10,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
451 chr10 51621007 . G GTATATATATA 0 PASS DP=21;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,6:1,2:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
452 chr10 52866670 . C CAAAAAA 0 PASS DP=23;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:3,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
453 chr10 53604670 . C CTTTT 0 PASS DP=39;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
454 chr10 54105277 . GATATAT G 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:3,3:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
455 chr10 54146887 . TGTGTATAC T 0 PASS DP=40;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:9,1:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
456 chr10 54221600 . C CT 0 PASS DP=35;GPV=1;SPV=0.029984;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
457 chr10 54503225 . A ATATGTG 0 PASS DP=54;GPV=1;SPV=0.018374;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,10:13,7:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
458 chr10 54873697 . A T 0 PASS DP=36;GPV=1;SPV=0.030897;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
459 chr10 55253253 . T A 0 PASS DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:9,4:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
460 chr10 55781207 . GA G 0 PASS DP=34;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:5,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
461 chr10 56390120 . A T 0 PASS DP=47;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
462 chr10 56546403 . A T 0 PASS DP=61;GPV=1;SPV=0.0011625;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,3:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
463 chr10 57379700 . G A 0 PASS DP=55;GPV=1;SPV=0.0004914;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:12,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
464 chr10 57813753 . G A 0 PASS DP=62;GPV=1;SPV=6.8987e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:10,7:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
465 chr10 58038377 . C T 0 PASS DP=64;GPV=1;SPV=0.017938;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:15,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
466 chr10 58136758 . G GTA 0 PASS DP=24;GPV=1;SPV=0.012821;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,5:1,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
467 chr10 59162436 . G T 0 PASS DP=64;GPV=1;SPV=0.004102;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:14,3:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
468 chr10 60822450 . A G 0 PASS DP=71;GPV=1;SPV=1.5971e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,3:11,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
469 chr10 63556634 . GTT G 0 PASS DP=29;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,4:1,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
470 chr10 63652988 . A T 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
471 chr10 63733760 . TAGATCTATATCTAC T 0 PASS DP=41;GPV=1;SPV=3.7518e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,19:3,7:4,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
472 chr10 64509039 . T G 0 PASS DP=25;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:1,2:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
473 chr10 67057674 . G T 0 PASS DP=60;GPV=1;SPV=0.030658;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
474 chr10 70248478 . G T 0 PASS DP=20;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
475 chr10 71642393 . C T 0 PASS DP=25;GPV=1;SPV=0.18447;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:4,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
476 chr10 74302101 . G T 0 PASS DP=20;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,3:1,1:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
477 chr10 75884245 . T TTGTGTGTGTG 0 PASS DP=28;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:1,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
478 chr10 76535243 . G A 0 PASS DP=48;GPV=1;SPV=0.0028662;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
479 chr10 77324971 . C CTG 0 PASS DP=33;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,6:0,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
480 chr10 78266694 . C CA 0 PASS DP=40;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,10:2,9:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
481 chr10 79787227 . T C 0 PASS DP=63;GPV=1;SPV=0.016895;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:12,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
482 chr10 80061163 . C G 0 PASS DP=34;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
483 chr10 80158813 . G C 0 PASS DP=54;GPV=1;SPV=0.00057068;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:9,7:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
484 chr10 80990997 . CT C 0 PASS DP=44;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,5:4,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
485 chr10 82170653 . G GGT 0 PASS DP=18;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
486 chr10 84174493 . T C 0 PASS DP=34;GPV=1;SPV=0.01205;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
487 chr10 84319447 . T A 0 PASS DP=32;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,4:4,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
488 chr10 84394385 . A ATGTGTGTGTGTG 0 PASS DP=37;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,5:4,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
489 chr10 88478570 . C A 0 PASS DP=42;GPV=1;SPV=3.9238e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,9:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
490 chr10 90037498 . G GA 0 PASS DP=27;GPV=1;SPV=0.013387;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:6,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
491 chr10 90102009 . C CAGAGAGAGAG 0 PASS DP=46;GPV=1;SPV=0.016238;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:11,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
492 chr10 90604983 . GAGAT G 0 PASS DP=56;GPV=1;SPV=0.037837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:13,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
493 chr10 91153473 . G A 0 PASS DP=72;GPV=1;SPV=0.00034236;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,3:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
494 chr10 91664097 . G GGGAT 0 PASS DP=49;GPV=1;SPV=0.057396;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:12,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
495 chr10 92675142 . AC A 0 PASS DP=36;GPV=1;SPV=0.01921;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
496 chr10 92983490 . CT C 0 PASS DP=26;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:1,7:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
497 chr10 93982563 . C CCTCT 0 PASS DP=48;GPV=1;SPV=0.01018;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:7,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
498 chr10 97282839 . CT C 0 PASS DP=31;GPV=1;SPV=0.0070941;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,8:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
499 chr10 97819830 . G GT 0 PASS DP=32;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:0,5:0,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
500 chr10 100676628 . C G 0 PASS DP=55;GPV=1;SPV=0.043486;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,5:11,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
501 chr10 102520212 . CT C 0 PASS DP=37;GPV=1;SPV=0.035568;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
502 chr10 102894439 . TAA T 0 PASS DP=58;GPV=1;SPV=0.16089;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,4:10,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
503 chr10 103639625 . A G 0 PASS DP=43;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,4:4,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
504 chr10 104620423 . T TTG 0 PASS DP=41;GPV=1;SPV=0.066203;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,7:8,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
505 chr10 104696666 . A T 0 PASS DP=25;GPV=1;SPV=0.20979;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
506 chr10 105411722 . T G 0 PASS DP=55;GPV=1;SPV=0.00018161;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
507 chr10 106291175 . C T 0 PASS DP=71;GPV=1;SPV=7.0793e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,3:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
508 chr10 106779547 . A T 0 PASS DP=50;GPV=1;SPV=0.080632;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,6:8,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
509 chr10 107171514 . C CTTT 0 PASS DP=27;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,7:1,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
510 chr10 108936941 . CTG C 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
511 chr10 109850929 . CAA C 0 PASS DP=34;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,10:4,9:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
512 chr10 112251080 . G A 0 PASS DP=83;GPV=1;SPV=7.2935e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:9,5:14,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
513 chr10 113118664 . G T 0 PASS DP=30;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,3:1,2:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
514 chr10 113658881 . C CA 0 PASS DP=23;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:3,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
515 chr10 116267948 . C A 0 PASS DP=64;GPV=1;SPV=0.10989;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
516 chr10 116628774 . C A 0 PASS DP=24;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:5,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
517 chr10 117146974 . ATT A 0 PASS DP=38;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:3,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
518 chr10 118438311 . CT C 0 PASS DP=27;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,4:4,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
519 chr10 118944739 . A C 0 PASS DP=37;GPV=1;SPV=0.046332;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
520 chr10 119001107 . ATG A 0 PASS DP=36;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
521 chr10 119567417 . AT A 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
522 chr10 119666547 . T TGTGCTCAGCGAGATGCATGAG 0 PASS DP=42;GPV=1;SPV=0.046549;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:9,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
523 chr10 121167304 . C T 0 PASS DP=68;GPV=1;SPV=9.9495e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
524 chr10 121955444 . AT A 0 PASS DP=39;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,7:2,3:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
525 chr10 123078525 . CTTTTTTTTT C 0 PASS DP=23;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:5,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
526 chr10 124580721 . C CT 0 PASS DP=35;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,4:0,0:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
527 chr10 124587024 . CTT C 0 PASS DP=25;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
528 chr10 124949522 . C T 0 PASS DP=36;GPV=1;SPV=0.16484;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:4,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
529 chr10 125486448 . T TAAAAA 0 PASS DP=43;GPV=1;SPV=0.003311;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:3,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
530 chr10 126558020 . G A 0 PASS DP=68;GPV=1;SPV=0.00161;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:10,3:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
531 chr10 126651080 . C A 0 PASS DP=54;GPV=1;SPV=5.0681e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:8,6:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
532 chr10 129343960 . A ATT 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:10,5:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
533 chr10 130705325 . G A 0 PASS DP=64;GPV=1;SPV=1.57e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,4:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
534 chr10 133645068 . G A 0 PASS DP=100;GPV=1;SPV=0.0040096;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,9:14,7:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
535 chr10 133657809 . A G 0 PASS DP=265;GPV=1;SPV=0.029166;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:124,15:66,8:58,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
536 chr11 179314 . C T 0 PASS DP=82;GPV=1;SPV=0.014318;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:17,2:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
537 chr11 350146 . A C 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
538 chr11 350151 . C CACA 0 PASS DP=24;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
539 chr11 2178862 . C G 0 PASS DP=60;GPV=1;SPV=0.00056474;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:14,6:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
540 chr11 3257577 . G T 0 PASS DP=31;GPV=1;SPV=0.023384;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
541 chr11 4160122 . C A 0 PASS DP=53;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,4:9,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
542 chr11 4228378 . C T 0 PASS DP=74;GPV=1;SPV=0.038913;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:12,1:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
543 chr11 4276958 . C A 0 PASS DP=27;GPV=1;SPV=0.010145;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
544 chr11 4335202 . A G 0 PASS DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
545 chr11 6385445 . A AAAGGAAGG 0 PASS DP=34;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:3,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
546 chr11 7282591 . C T 0 PASS DP=54;GPV=1;SPV=0.00088456;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
547 chr11 7407360 . ATTTTTT A 0 PASS DP=34;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:10,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
548 chr11 7889212 . C A 0 PASS DP=59;GPV=1;SPV=0.0030692;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:14,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
549 chr11 8862322 . CTTTT C 0 PASS DP=25;GPV=1;SPV=0.0032575;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:4,12:3,9:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
550 chr11 9671357 . TAAATA T 0 PASS DP=28;GPV=1;SPV=0.0041408;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:2,1:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
551 chr11 10901712 . C T 0 PASS DP=18;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
552 chr11 14781161 . G A 0 PASS DP=48;GPV=1;SPV=0.0028662;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
553 chr11 15298915 . T C 0 PASS DP=24;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,3:0,0:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
554 chr11 15298919 . T C 0 PASS DP=25;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,3:0,0:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
555 chr11 15502822 . G GCA 0 PASS DP=36;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,4:8,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
556 chr11 16149796 . T C 0 PASS DP=52;GPV=1;SPV=6.7064e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:5,8:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
557 chr11 17756520 . AACACACAC A 0 PASS DP=35;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,9:3,5:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
558 chr11 18377215 . G GTTT 0 PASS DP=34;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,6:6,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
559 chr11 19234145 . T TA 0 PASS DP=34;GPV=1;SPV=0.013278;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,12:9,10:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
560 chr11 20289136 . C T 0 PASS DP=66;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,4:7,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
561 chr11 20549262 . T C 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
562 chr11 21251540 . C T 0 PASS DP=56;GPV=1;SPV=0.0041203;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:15,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
563 chr11 21697973 . A AATT 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
564 chr11 21697974 . T G 0 PASS DP=23;GPV=1;SPV=0.041958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,6:1,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
565 chr11 22659898 . G A 0 PASS DP=22;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
566 chr11 24926388 . TAC T 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:5,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
567 chr11 25300473 . C CTT 0 PASS DP=34;GPV=1;SPV=0.0063246;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,8:3,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
568 chr11 25475491 . A G 0 PASS DP=50;GPV=1;SPV=6.2951e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:4,4:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
569 chr11 26447206 . C CA 0 PASS DP=27;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,5:7,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
570 chr11 26726156 . TCTTCCTTC T 0 PASS DP=40;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,8:4,3:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
571 chr11 28433172 . G T 0 PASS DP=54;GPV=1;SPV=0.074026;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,4:8,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
572 chr11 29820724 . T TA 0 PASS DP=53;GPV=1;SPV=6.6326e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
573 chr11 30235108 . G C 0 PASS DP=62;GPV=1;SPV=9.1194e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:3,5:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
574 chr11 30790121 . GA G 0 PASS DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:14,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
575 chr11 31148210 . T TAA 0 PASS DP=34;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:7,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
576 chr11 31163795 . C T 0 PASS DP=49;GPV=1;SPV=7.0087e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:4,7:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
577 chr11 32503846 . G A 0 PASS DP=17;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
578 chr11 34424259 . C CAA 0 PASS DP=21;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
579 chr11 37194539 . CTT C 0 PASS DP=37;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:3,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
580 chr11 37216846 . C G 0 PASS DP=64;GPV=1;SPV=9.263e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,3:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
581 chr11 40578140 . GGTTTTTTTTTTTT G 0 PASS DP=18;GPV=1;SPV=0.022967;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
582 chr11 40834919 . C G 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
583 chr11 40851076 . C T 0 PASS DP=65;GPV=1;SPV=4.316e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:6,5:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
584 chr11 41083294 . G T 0 PASS DP=49;GPV=1;SPV=0.00014258;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:11,7:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
585 chr11 41304529 . T G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
586 chr11 41938396 . G A 0 PASS DP=51;GPV=1;SPV=0.047696;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:9,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
587 chr11 42125346 . AC A 0 PASS DP=47;GPV=1;SPV=0.031857;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:1,7:0,1:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
588 chr11 43810371 . AT A 0 PASS DP=37;GPV=1;SPV=0.012987;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:0,5:0,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
589 chr11 45923985 . CAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=22;GPV=1;SPV=0.004257;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:4,5:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
590 chr11 45989490 . T TAAA 0 PASS DP=36;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,9:3,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
591 chr11 46816787 . T A 0 PASS DP=35;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,3:3,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
592 chr11 49035339 . ATTTTTTTTTTTTTT A 0 PASS DP=25;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
593 chr11 49212688 . C G 0 PASS DP=61;GPV=1;SPV=9.3552e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
594 chr11 49857032 . C T 0 PASS DP=48;GPV=1;SPV=0.00029985;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
595 chr11 51289722 . C T 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:6,2:22,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
596 chr11 51622370 . G A 0 PASS DP=45;GPV=1;SPV=0.020274;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:1,2:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
597 chr11 51850532 . C G 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
598 chr11 52142061 . A C 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
599 chr11 52304615 . G T 0 PASS DP=72;GPV=1;SPV=0.064197;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:2,0:31,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
600 chr11 52482834 . A T 0 PASS DP=160;GPV=1;SPV=0.024396;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:74,10:30,3:44,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
601 chr11 52556895 . T C 0 PASS DP=147;GPV=1;SPV=0.016892;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:53,14:9,7:44,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
602 chr11 53372519 . T G 0 PASS DP=376;GPV=1;SPV=0.025298;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:172:150,22:81,3:69,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
603 chr11 53604369 . G T 0 PASS DP=78;GPV=1;SPV=0.0085098;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:14,5:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
604 chr11 53628092 . T C 0 PASS DP=83;GPV=1;SPV=0.031193;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:14,10:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
605 chr11 53698751 . C A 0 PASS DP=45;GPV=1;SPV=0.032518;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:0,0:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
606 chr11 54372015 . C G 0 PASS DP=42;GPV=1;SPV=0.036365;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:8,2:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
607 chr11 54384523 . C G 0 PASS DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
608 chr11 54533839 . T A 0 PASS DP=38;GPV=1;SPV=0.024656;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
609 chr11 55775691 . C G 0 PASS DP=51;GPV=1;SPV=0.034379;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
610 chr11 56166092 . GA G 0 PASS DP=47;GPV=1;SPV=0.0055032;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
611 chr11 60451481 . C T 0 PASS DP=22;GPV=1;SPV=0.039341;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
612 chr11 62899037 . C CAAA 0 PASS DP=27;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
613 chr11 64236716 . CAAAAAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:2,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
614 chr11 64733395 . AACAC A 0 PASS DP=35;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:4,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
615 chr11 66213902 . G A 0 PASS DP=72;GPV=1;SPV=6.4422e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:12,9:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
616 chr11 68426423 . C CTT 0 PASS DP=35;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:13,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
617 chr11 68954772 . A AAAG 0 PASS DP=20;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:1,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
618 chr11 69026145 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.0012058;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:6,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
619 chr11 70157979 . CA C 0 PASS DP=31;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,5:9,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
620 chr11 71133346 . A ATGGCTGGCTGGC 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
621 chr11 71658720 . C G 0 PASS DP=48;GPV=1;SPV=0.057396;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:15,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
622 chr11 74636665 . C CT 0 PASS DP=53;GPV=1;SPV=0.00052897;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:10,8:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
623 chr11 74656744 . G GT 0 PASS DP=49;GPV=1;SPV=0.0033983;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,9:8,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
624 chr11 76236832 . A G 0 PASS DP=50;GPV=1;SPV=0.0034541;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
625 chr11 76494720 . TTCC T 0 PASS DP=21;GPV=1;SPV=0.12281;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
626 chr11 83008989 . G C 0 PASS DP=47;GPV=1;SPV=0.0069488;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
627 chr11 83467810 . T TACAC 0 PASS DP=24;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:3,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
628 chr11 83848124 . CTT C 0 PASS DP=49;GPV=1;SPV=0.081016;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:11,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
629 chr11 86602116 . G A 0 PASS DP=54;GPV=1;SPV=0.11792;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:12,1:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
630 chr11 87419191 . C CA 0 PASS DP=55;GPV=1;SPV=0.00039192;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:8,11:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
631 chr11 88052933 . T TG 0 PASS DP=20;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
632 chr11 88570571 . A T 0 PASS DP=27;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,4:4,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
633 chr11 89749670 . A G 0 PASS DP=58;GPV=1;SPV=0.011696;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,7:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
634 chr11 89772506 . T C 0 PASS DP=80;GPV=1;SPV=0.019233;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:16,1:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
635 chr11 89883593 . G A 0 PASS DP=44;GPV=1;SPV=0.0143;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:2,3:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
636 chr11 89960943 . C T 0 PASS DP=28;GPV=1;SPV=0.024176;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
637 chr11 90971910 . G C 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
638 chr11 92315479 . G A 0 PASS DP=22;GPV=1;SPV=0.047472;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
639 chr11 92950475 . TCTCCCTCCCTCCCTTCCTTCCTTCCTTCTTTC T 0 PASS DP=22;GPV=1;SPV=0.23636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:1,0:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
640 chr11 93243149 . A G 0 PASS DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
641 chr11 93420517 . C T 0 PASS DP=58;GPV=1;SPV=0.0051564;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:3,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
642 chr11 94810793 . C CA 0 PASS DP=42;GPV=1;SPV=0.0010673;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
643 chr11 95403130 . AT A 0 PASS DP=23;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
644 chr11 95654621 . G A 0 PASS DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
645 chr11 98275560 . T C 0 PASS DP=38;GPV=1;SPV=0.01707;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
646 chr11 98977220 . C T 0 PASS DP=33;GPV=1;SPV=0.026047;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
647 chr11 99080980 . GT G 0 PASS DP=43;GPV=1;SPV=0.044901;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
648 chr11 99151211 . T A 0 PASS DP=51;GPV=1;SPV=0.061499;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:10,4:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
649 chr11 99724327 . A T 0 PASS DP=52;GPV=1;SPV=0.0035931;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,3:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
650 chr11 100194603 . GA G 0 PASS DP=46;GPV=1;SPV=0.00078184;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:10,10:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
651 chr11 101263877 . GTATA G 0 PASS DP=46;GPV=1;SPV=0.012394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:15,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
652 chr11 101263883 . A G 0 PASS DP=43;GPV=1;SPV=0.034629;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:13,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
653 chr11 104194686 . G A 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:3,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
654 chr11 105161856 . CA C 0 PASS DP=21;GPV=1;SPV=0.0089783;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,1:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
655 chr11 107523052 . A C 0 PASS DP=47;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
656 chr11 107572651 . A AT 0 PASS DP=63;GPV=1;SPV=0.0060836;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:17,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
657 chr11 109323949 . T C 0 PASS DP=38;GPV=1;SPV=0.00034172;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,14:5,9:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
658 chr11 109757896 . TTCTCTCTCTCTCTCTC T 0 PASS DP=28;GPV=1;SPV=0.028205;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
659 chr11 111005139 . A ATG 0 PASS DP=37;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:5,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
660 chr11 111177973 . CTT C 0 PASS DP=31;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,5:4,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
661 chr11 111768842 . C CGTGTGT 0 PASS DP=27;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:5,2:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
662 chr11 112108914 . CA C 0 PASS DP=45;GPV=1;SPV=0.027541;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:15,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
663 chr11 114468134 . A T 0 PASS DP=44;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
664 chr11 115169206 . A ATTTTT 0 PASS DP=25;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:5,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
665 chr11 116818336 . TA T 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
666 chr11 117514578 . T C 0 PASS DP=42;GPV=1;SPV=0.032696;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,1:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
667 chr11 118419127 . G T 0 PASS DP=58;GPV=1;SPV=3.4113e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,4:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
668 chr11 118852964 . A AT 0 PASS DP=73;GPV=1;SPV=0.019318;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,5:13,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
669 chr11 119022957 . G GT 0 PASS DP=24;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
670 chr11 119763937 . TTTTTC T 0 PASS DP=20;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
671 chr11 123102279 . G GTT 0 PASS DP=31;GPV=1;SPV=0.030289;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
672 chr11 123565202 . C CT 0 PASS DP=32;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:10,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
673 chr11 126863356 . A AGTGTGTGTTTGAGTGCGT 0 PASS DP=53;GPV=1;SPV=0.10123;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:13,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
674 chr11 127364704 . C T 0 PASS DP=68;GPV=1;SPV=0.026693;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
675 chr11 127553387 . C CAAAA 0 PASS DP=46;GPV=1;SPV=0.048514;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:11,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
676 chr11 129585183 . C CT 0 PASS DP=43;GPV=1;SPV=0.0051722;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:7,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
677 chr11 129585356 . G GT 0 PASS DP=56;GPV=1;SPV=0.041497;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,8:5,7:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
678 chr11 129688629 . CAAA C 0 PASS DP=50;GPV=1;SPV=0.052323;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,9:15,3:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
679 chr11 130037592 . A G 0 PASS DP=44;GPV=1;SPV=0.024807;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,2:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
680 chr11 130596877 . C CGGATGGAT 0 PASS DP=41;GPV=1;SPV=0.02564;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:5,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
681 chr11 131137267 . C CACACATACACACAT 0 PASS DP=58;GPV=1;SPV=0.04269;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,8:12,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
682 chr11 131265696 . A ATCT 0 PASS DP=23;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
683 chr11 131325631 . C CTG 0 PASS DP=68;GPV=1;SPV=0.00011829;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,12:8,8:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
684 chr11 131578609 . G A 0 PASS DP=81;GPV=1;SPV=3.9881e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:6,8:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
685 chr11 132161395 . T C 0 PASS DP=30;GPV=1;SPV=0.010538;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,10:3,4:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
686 chr11 133437271 . C T 0 PASS DP=58;GPV=1;SPV=0.0011582;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:5,5:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
687 chr11 135047060 . C T 0 PASS DP=38;GPV=1;SPV=0.02835;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
688 chr12 544240 . T G 0 PASS DP=46;GPV=1;SPV=0.11667;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:17,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
689 chr12 1122125 . G C 0 PASS DP=22;GPV=1;SPV=0.26316;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:8,2:5,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
690 chr12 1522170 . A AAAAAAAATAC 0 PASS DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
691 chr12 1522184 . C A 0 PASS DP=28;GPV=1;SPV=0.034783;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
692 chr12 3496214 . A ATATT 0 PASS DP=27;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:8,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
693 chr12 3919773 . GTTTT G 0 PASS DP=24;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
694 chr12 4512508 . C T 0 PASS DP=83;GPV=1;SPV=0.030096;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:15,3:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
695 chr12 6820855 . TGAGA T 0 PASS DP=35;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,5:1,1:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
696 chr12 8215041 . C T 0 PASS DP=73;GPV=1;SPV=0.01931;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:14,2:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
697 chr12 8455116 . G GATTTT 0 PASS DP=31;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:9,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
698 chr12 9216233 . G T 0 PASS DP=63;GPV=1;SPV=0.00072423;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:11,3:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
699 chr12 9284109 . G C 0 PASS DP=42;GPV=1;SPV=0.034629;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
700 chr12 10239540 . T C 0 PASS DP=28;GPV=1;SPV=0.013043;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:1,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
701 chr12 10526141 . CACATATATATATATATATATATATATATATATATATATATATATATATATA C 0 PASS DP=27;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,6:2,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
702 chr12 11160485 . T G 0 PASS DP=45;GPV=1;SPV=0.019565;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,5:5,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
703 chr12 11524456 . CTTAG C 0 PASS DP=60;GPV=1;SPV=6.1809e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:7,8:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
704 chr12 12909937 . T TAA 0 PASS DP=29;GPV=1;SPV=0.044444;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:4,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
705 chr12 13698823 . C T 0 PASS DP=57;GPV=1;SPV=0.00076774;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
706 chr12 13880506 . T C 0 PASS DP=44;GPV=1;SPV=0.0054908;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
707 chr12 15143335 . T TA 0 PASS DP=54;GPV=1;SPV=0.0084034;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,4:5,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
708 chr12 15166540 . GGTA G 0 PASS DP=67;GPV=1;SPV=0.10731;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
709 chr12 15610657 . T TA 0 PASS DP=55;GPV=1;SPV=0.025398;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:12,5:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
710 chr12 16235270 . ATG A 0 PASS DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
711 chr12 17722701 . GA G 0 PASS DP=43;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,4:3,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
712 chr12 18255252 . T C 0 PASS DP=46;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,4:10,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
713 chr12 18516261 . G GTT 0 PASS DP=48;GPV=1;SPV=3.7614e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:4,6:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
714 chr12 18524479 . T A 0 PASS DP=72;GPV=1;SPV=6.7124e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:6,6:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
715 chr12 19439669 . A G 0 PASS DP=49;GPV=1;SPV=0.08867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
716 chr12 21181585 . C A 0 PASS DP=62;GPV=1;SPV=7.8463e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
717 chr12 21419847 . T G 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,2:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
718 chr12 23379875 . CA C 0 PASS DP=21;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,5:2,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
719 chr12 23726118 . CGAGA C 0 PASS DP=28;GPV=1;SPV=0.30409;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:8,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
720 chr12 23907746 . CAA C 0 PASS DP=44;GPV=1;SPV=0.069923;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,8:7,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
721 chr12 28183993 . T C 0 PASS DP=50;GPV=1;SPV=0.00019854;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:11,5:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
722 chr12 29299213 . CA C 0 PASS DP=26;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:6,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
723 chr12 30362495 . ATATATATATGTATATATATATATATATATATG A 0 PASS DP=18;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
724 chr12 31048468 . C T 0 PASS DP=63;GPV=1;SPV=0.077856;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:9,2:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
725 chr12 31108896 . T C 0 PASS DP=31;GPV=1;SPV=0.012102;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
726 chr12 32676648 . G A 0 PASS DP=62;GPV=1;SPV=0.00010246;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
727 chr12 32742129 . C G 0 PASS DP=52;GPV=1;SPV=0.0066191;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,5:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
728 chr12 33459924 . C G 0 PASS DP=54;GPV=1;SPV=0.02299;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:12,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
729 chr12 33962526 . A G 0 PASS DP=71;GPV=1;SPV=0.00051786;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:16,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
730 chr12 34349437 . G GT 0 PASS DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
731 chr12 34796338 . C T 0 PASS DP=38;GPV=1;SPV=0.0054096;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
732 chr12 34907117 . G T 0 PASS DP=376;GPV=1;SPV=0.0066075;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:179:156,23:75,19:81,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
733 chr12 34916097 . T C 0 PASS DP=138;GPV=1;SPV=0.031211;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:62,7:28,1:34,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
734 chr12 35037606 . A C 0 PASS DP=137;GPV=1;SPV=0.033931;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:18,2:28,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
735 chr12 35208597 . C G 0 PASS DP=422;GPV=1;SPV=0.022837;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:201:169,32:74,16:95,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
736 chr12 35302590 . T C 0 PASS DP=202;GPV=1;SPV=0.024674;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:75,17:33,7:42,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
737 chr12 36508012 . G A 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
738 chr12 36854572 . G C 0 PASS DP=234;GPV=1;SPV=0.027728;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:103,14:94,12:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
739 chr12 36965324 . G C 0 PASS DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,1:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
740 chr12 37433992 . G GTT 0 PASS DP=25;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:7,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
741 chr12 37948223 . C A 0 PASS DP=52;GPV=1;SPV=0.18371;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:16,1:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
742 chr12 46415122 . C CT 0 PASS DP=29;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
743 chr12 46716673 . A C 0 PASS DP=53;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
744 chr12 48078370 . CAT C 0 PASS DP=27;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
745 chr12 50172552 . A ATT 0 PASS DP=32;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:11,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
746 chr12 51199139 . GATGGAACCAAGTGGTCAAGGCCCCGCAGAGGCTA G 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
747 chr12 53788018 . G GTA 0 PASS DP=25;GPV=1;SPV=0.0070433;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:3,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
748 chr12 54026966 . G T 0 PASS DP=65;GPV=1;SPV=0.12093;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,5:9,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
749 chr12 54412066 . G A 0 PASS DP=54;GPV=1;SPV=0.025527;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
750 chr12 56691319 . CA C 0 PASS DP=26;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
751 chr12 56876294 . C CTT 0 PASS DP=20;GPV=1;SPV=0.023736;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:1,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
752 chr12 57658719 . CAA C 0 PASS DP=20;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,4:1,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
753 chr12 58023731 . A G 0 PASS DP=23;GPV=1;SPV=0.0069323;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
754 chr12 58261437 . C T 0 PASS DP=63;GPV=1;SPV=0.00013297;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:12,6:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
755 chr12 61299907 . A T 0 PASS DP=47;GPV=1;SPV=0.13128;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:16,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
756 chr12 61518665 . A AAAG 0 PASS DP=32;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:7,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
757 chr12 62059139 . A ATGTGTGTGTG 0 PASS DP=49;GPV=1;SPV=0.023489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:7,6:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
758 chr12 64288489 . C T 0 PASS DP=37;GPV=1;SPV=0.0070131;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:10,7:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
759 chr12 64328700 . AAAAAAAATATATATATATAT A 0 PASS DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
760 chr12 66000736 . G A 0 PASS DP=38;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,4:2,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
761 chr12 66815848 . CTT C 0 PASS DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
762 chr12 67634086 . A T 0 PASS DP=23;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,5:2,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
763 chr12 68683283 . CA C 0 PASS DP=45;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,9:5,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
764 chr12 69200310 . ATAAGAAAGAGATAAGAGATAAGAGG A 0 PASS DP=46;GPV=1;SPV=0.042832;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
765 chr12 69491505 . AT A 0 PASS DP=31;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:7,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
766 chr12 70103509 . CA C 0 PASS DP=52;GPV=1;SPV=0.0016986;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
767 chr12 72373657 . G T 0 PASS DP=68;GPV=1;SPV=7.1266e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:9,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
768 chr12 73319208 . C CT 0 PASS DP=36;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
769 chr12 75435052 . G GTT 0 PASS DP=23;GPV=1;SPV=0.092234;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
770 chr12 76122077 . TATATA T 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:8,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
771 chr12 76122145 . TA T 0 PASS DP=37;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:14,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
772 chr12 76122149 . AT A 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
773 chr12 77090322 . TTCCTTCCTTCCC T 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,0:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
774 chr12 79486998 . CT C 0 PASS DP=24;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:8,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
775 chr12 79563504 . G C 0 PASS DP=55;GPV=1;SPV=3.9623e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:9,9:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
776 chr12 79890901 . C A 0 PASS DP=19;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:3,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
777 chr12 80355229 . C T 0 PASS DP=21;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,3:5,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
778 chr12 80504030 . T C 0 PASS DP=46;GPV=1;SPV=0.004138;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:5,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
779 chr12 81922880 . A AT 0 PASS DP=26;GPV=1;SPV=0.034479;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
780 chr12 83409601 . A G 0 PASS DP=28;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,3:4,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
781 chr12 84275060 . T TATATATAAAATATATTTTATATATATATA 0 PASS DP=32;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:5,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
782 chr12 85464656 . TACAC T 0 PASS DP=35;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:8,1:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
783 chr12 85488282 . T C 0 PASS DP=55;GPV=1;SPV=0.002853;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:11,5:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
784 chr12 86376844 . CAGAG C 0 PASS DP=44;GPV=1;SPV=0.013285;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,6:6,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
785 chr12 86502767 . ATG A 0 PASS DP=25;GPV=1;SPV=0.45333;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:15,2:4,1:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
786 chr12 88745578 . G A 0 PASS DP=35;GPV=1;SPV=0.034783;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:9,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
787 chr12 89677954 . TTATA T 0 PASS DP=39;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,9:6,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
788 chr12 89862508 . T G 0 PASS DP=61;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,4:6,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
789 chr12 90181091 . T A 0 PASS DP=18;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:2,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
790 chr12 91180314 . A G 0 PASS DP=53;GPV=1;SPV=0.0432;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
791 chr12 92079801 . A C 0 PASS DP=47;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,2:1,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
792 chr12 92537344 . T A 0 PASS DP=49;GPV=1;SPV=0.02229;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:9,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
793 chr12 92632819 . T G 0 PASS DP=73;GPV=1;SPV=3.2072e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:8,9:12,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
794 chr12 92998044 . G GAC 0 PASS DP=43;GPV=1;SPV=0.030474;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
795 chr12 94014289 . C CT 0 PASS DP=17;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:0,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
796 chr12 95055952 . C CA 0 PASS DP=27;GPV=1;SPV=0.023452;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
797 chr12 95347547 . C CT 0 PASS DP=23;GPV=1;SPV=0.19298;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,3:4,1:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
798 chr12 95424716 . C CT 0 PASS DP=38;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
799 chr12 95641273 . A T 0 PASS DP=53;GPV=1;SPV=0.045693;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
800 chr12 96561704 . TACACACAC T 0 PASS DP=35;GPV=1;SPV=0.0093665;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:8,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
801 chr12 96591717 . G A 0 PASS DP=67;GPV=1;SPV=0.00022263;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:9,4:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
802 chr12 96868430 . C CT 0 PASS DP=43;GPV=1;SPV=0.0094148;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:6,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
803 chr12 97614646 . G T 0 PASS DP=38;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
804 chr12 98037742 . G GGGAA 0 PASS DP=53;GPV=1;SPV=0.008898;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,11:8,6:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
805 chr12 99151541 . A T 0 PASS DP=45;GPV=1;SPV=0.001665;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
806 chr12 99322275 . G A 0 PASS DP=56;GPV=1;SPV=0.011127;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
807 chr12 99693781 . CT C 0 PASS DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
808 chr12 102337565 . G A 0 PASS DP=68;GPV=1;SPV=0.00056917;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:16,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
809 chr12 105088569 . A AAACAACAACAAC 0 PASS DP=37;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,12:5,6:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
810 chr12 106200353 . T C 0 PASS DP=30;GPV=1;SPV=0.036526;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
811 chr12 107124459 . C CA 0 PASS DP=31;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:14,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
812 chr12 107987959 . T TACACACACACACAC 0 PASS DP=29;GPV=1;SPV=0.0085139;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,10:3,6:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
813 chr12 110311733 . A T 0 PASS DP=47;GPV=1;SPV=0.05;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:0,3:0,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
814 chr12 113061450 . G A 0 PASS DP=57;GPV=1;SPV=0.00065454;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
815 chr12 114219607 . CA C 0 PASS DP=34;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
816 chr12 114556107 . C A 0 PASS DP=72;GPV=1;SPV=5.048e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:11,5:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
817 chr12 114617380 . G GTT 0 PASS DP=29;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:10,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
818 chr12 114698158 . T C 0 PASS DP=64;GPV=1;SPV=0.040348;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,6:6,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
819 chr12 114783555 . TA T 0 PASS DP=45;GPV=1;SPV=0.00070128;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
820 chr12 115353202 . TC T 0 PASS DP=58;GPV=1;SPV=6.5361e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,8:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
821 chr12 115441818 . CTCTATA C 0 PASS DP=27;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:1,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
822 chr12 115627826 . TAA T 0 PASS DP=34;GPV=1;SPV=0.009628;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:7,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
823 chr12 116356029 . C CAAAAA 0 PASS DP=26;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:2,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
824 chr12 116800812 . T TTAAAATAAAA 0 PASS DP=40;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,4:5,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
825 chr12 117135743 . CTTT C 0 PASS DP=27;GPV=1;SPV=0.022967;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:1,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
826 chr12 117283855 . C CAAA 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:16,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
827 chr12 117632218 . CTTTT C 0 PASS DP=27;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:2,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
828 chr12 117734745 . C CATGGATGGATGGATGGATGG 0 PASS DP=42;GPV=1;SPV=0.026469;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
829 chr12 117833965 . C CA 0 PASS DP=38;GPV=1;SPV=0.0054096;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
830 chr12 118345748 . G A 0 PASS DP=43;GPV=1;SPV=0.00077493;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:8,4:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
831 chr12 118701939 . C CA 0 PASS DP=46;GPV=1;SPV=0.016233;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,9:9,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
832 chr12 118938845 . C A 0 PASS DP=60;GPV=1;SPV=3.0928e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,17:6,8:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
833 chr12 119731475 . CA C 0 PASS DP=29;GPV=1;SPV=0.0078215;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:6,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
834 chr12 120201481 . C CT 0 PASS DP=30;GPV=1;SPV=0.0016572;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:3,3:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
835 chr12 121530227 . C CA 0 PASS DP=28;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:9,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
836 chr12 122124584 . C T 0 PASS DP=40;GPV=1;SPV=0.0019379;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
837 chr12 122458532 . A ATTTAAT 0 PASS DP=48;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
838 chr12 123273990 . C T 0 PASS DP=53;GPV=1;SPV=0.00041286;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:10,8:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
839 chr12 123733313 . CA C 0 PASS DP=45;GPV=1;SPV=0.0014958;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:9,10:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
840 chr12 125696500 . A T 0 PASS DP=76;GPV=1;SPV=0.00083898;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:12,9:6,3:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
841 chr12 125708010 . C T 0 PASS DP=74;GPV=1;SPV=3.8667e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:12,11:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
842 chr12 126612632 . A G 0 PASS DP=33;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:3,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
843 chr12 127036284 . C T 0 PASS DP=54;GPV=1;SPV=0.0001362;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:8,5:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
844 chr12 127136130 . G C 0 PASS DP=66;GPV=1;SPV=8.543e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:12,9:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
845 chr12 127592713 . G C 0 PASS DP=69;GPV=1;SPV=6.605e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:6,7:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
846 chr12 128462101 . GT G 0 PASS DP=61;GPV=1;SPV=0.10033;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
847 chr12 129297613 . C T 0 PASS DP=53;GPV=1;SPV=0.0076814;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:8,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
848 chr12 129588746 . TTC T 0 PASS DP=42;GPV=1;SPV=0.12121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,3:1,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
849 chr12 130532162 . T A 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:2,3:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
850 chr12 131278535 . C T 0 PASS DP=52;GPV=1;SPV=0.0044741;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
851 chr12 132054452 . C A 0 PASS DP=54;GPV=1;SPV=0.00018612;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,7:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
852 chr12 132380926 . G A 0 PASS DP=41;GPV=1;SPV=0.016594;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:8,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
853 chr12 132692796 . G C 0 PASS DP=35;GPV=1;SPV=0.0074932;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
854 chr12 132895660 . A G 0 PASS DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
855 chr12 132965438 . CT C 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
856 chr13 18178573 . A G 0 PASS DP=326;GPV=1;SPV=0.027138;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:140,19:67,12:73,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
857 chr13 18194779 . G A 0 PASS DP=71;GPV=1;SPV=0.01173;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:10,4:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
858 chr13 18336400 . C T 0 PASS DP=72;GPV=1;SPV=0.01598;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:12,2:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
859 chr13 18747015 . C T 0 PASS DP=61;GPV=1;SPV=0.023954;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:9,4:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
860 chr13 19779877 . C T 0 PASS DP=52;GPV=1;SPV=0.015217;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:16,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
861 chr13 20851711 . CA C 0 PASS DP=24;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:3,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
862 chr13 21884018 . T G 0 PASS DP=41;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
863 chr13 22402137 . C CT 0 PASS DP=34;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,8:0,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
864 chr13 24421478 . G C 0 PASS DP=104;GPV=1;SPV=0.035001;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:30,8:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
865 chr13 25159298 . G T 0 PASS DP=46;GPV=1;SPV=0.044826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:6,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
866 chr13 25159308 . A AAT 0 PASS DP=51;GPV=1;SPV=0.025437;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:7,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
867 chr13 25310519 . C CT 0 PASS DP=26;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:4,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
868 chr13 25740308 . CA C 0 PASS DP=33;GPV=1;SPV=0.0031242;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:6,9:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
869 chr13 26723699 . G A 0 PASS DP=38;GPV=1;SPV=0.0093762;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:2,3:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
870 chr13 26805525 . T C 0 PASS DP=36;GPV=1;SPV=0.00058707;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:4,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
871 chr13 26897028 . C T 0 PASS DP=76;GPV=1;SPV=1.4106e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,11:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
872 chr13 28646352 . C CA 0 PASS DP=50;GPV=1;SPV=0.0031516;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,8:6,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
873 chr13 28737290 . A AAGT 0 PASS DP=19;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
874 chr13 29168888 . C CTGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=25;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:2,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
875 chr13 29181857 . C T 0 PASS DP=50;GPV=1;SPV=0.00033748;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:4,5:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
876 chr13 31038665 . T C 0 PASS DP=45;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
877 chr13 34362939 . AAAAG A 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
878 chr13 34368386 . G C 0 PASS DP=53;GPV=1;SPV=0.0016883;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
879 chr13 34802492 . T TA 0 PASS DP=70;GPV=1;SPV=0.014855;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:12,2:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
880 chr13 34992238 . G GTATA 0 PASS DP=31;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,6:3,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
881 chr13 36142687 . AC A 0 PASS DP=30;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:3,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
882 chr13 37335480 . A ATTTACCCCAT 0 PASS DP=40;GPV=1;SPV=0.043236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
883 chr13 37844797 . G A 0 PASS DP=53;GPV=1;SPV=0.00043265;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
884 chr13 42841090 . T C 0 PASS DP=44;GPV=1;SPV=0.093185;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
885 chr13 43434943 . T G 0 PASS DP=21;GPV=1;SPV=0.0089783;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:0,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
886 chr13 43879836 . T C 0 PASS DP=43;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:6,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
887 chr13 44066175 . C CT 0 PASS DP=26;GPV=1;SPV=0.011037;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
888 chr13 47559950 . CAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=17;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
889 chr13 47702279 . A T 0 PASS DP=42;GPV=1;SPV=0.034325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,6:5,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
890 chr13 48636013 . T TACATATAGAGAGAGAGAGAGAGAGAGAGAG 0 PASS DP=35;GPV=1;SPV=0.015417;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:5,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
891 chr13 48641363 . C CAAA 0 PASS DP=46;GPV=1;SPV=0.010106;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:5,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
892 chr13 51479845 . C CT 0 PASS DP=20;GPV=1;SPV=0.12281;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
893 chr13 51963736 . C CA 0 PASS DP=36;GPV=1;SPV=0.027836;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
894 chr13 52223586 . A T 0 PASS DP=37;GPV=1;SPV=0.013095;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:5,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
895 chr13 52281163 . TGTGTGTGTGC T 0 PASS DP=113;GPV=1;SPV=0.045903;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:22,5:30,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
896 chr13 52333747 . G A 0 PASS DP=76;GPV=1;SPV=0.039673;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:17,6:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
897 chr13 52504583 . G A 0 PASS DP=34;GPV=1;SPV=0.019548;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
898 chr13 54672674 . GGT G 0 PASS DP=28;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:2,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
899 chr13 56018887 . G T 0 PASS DP=60;GPV=1;SPV=0.011027;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:15,5:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
900 chr13 56024786 . C A 0 PASS DP=58;GPV=1;SPV=0.00094048;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,6:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
901 chr13 56089113 . TA T 0 PASS DP=61;GPV=1;SPV=0.011057;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
902 chr13 56277723 . A G 0 PASS DP=36;GPV=1;SPV=0.022727;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
903 chr13 56368797 . C T 0 PASS DP=62;GPV=1;SPV=0.0041064;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:15,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
904 chr13 58582543 . G T 0 PASS DP=54;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,4:13,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
905 chr13 59443228 . T TAAAAAAAAAA 0 PASS DP=26;GPV=1;SPV=0.15;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:2,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
906 chr13 60014969 . T TTTTTGTTTTG 0 PASS DP=47;GPV=1;SPV=0.011765;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,12:3,5:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
907 chr13 60321660 . CT C 0 PASS DP=24;GPV=1;SPV=0.0059289;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
908 chr13 60662347 . CT C 0 PASS DP=25;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
909 chr13 60859020 . G A 0 PASS DP=81;GPV=1;SPV=7.8995e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:18,8:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
910 chr13 61015496 . C CTCTCTCTCTCTCTCTCTCTATATATA 0 PASS DP=46;GPV=1;SPV=0.010905;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,7:12,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
911 chr13 64416401 . CATCTATCT C 0 PASS DP=48;GPV=1;SPV=0.026352;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,5:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
912 chr13 65280394 . A AGTGTGTGT 0 PASS DP=48;GPV=1;SPV=0.00066757;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,13:9,5:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
913 chr13 65288043 . G A 0 PASS DP=42;GPV=1;SPV=0.043286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
914 chr13 65513553 . TAAAA T 0 PASS DP=24;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:4,8:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
915 chr13 66114842 . T A 0 PASS DP=24;GPV=1;SPV=0.083011;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
916 chr13 66687365 . C T 0 PASS DP=56;GPV=1;SPV=0.0028364;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
917 chr13 66756542 . C T 0 PASS DP=47;GPV=1;SPV=0.014137;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,6:5,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
918 chr13 66820549 . G T 0 PASS DP=53;GPV=1;SPV=0.00070506;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:4,5:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
919 chr13 69784882 . A AT 0 PASS DP=28;GPV=1;SPV=0.021256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
920 chr13 70753162 . CTT C 0 PASS DP=27;GPV=1;SPV=0.017168;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
921 chr13 71864164 . AGCGC A 0 PASS DP=18;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
922 chr13 77377562 . T C 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:14,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
923 chr13 79219049 . G A 0 PASS DP=38;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,2:0,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
924 chr13 81088696 . C A 0 PASS DP=67;GPV=1;SPV=1.2865e-09;SS=2;SSC=88;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:12,24:6,10:6,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
925 chr13 81658352 . A G 0 PASS DP=34;GPV=1;SPV=0.25826;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,4:5,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
926 chr13 82684636 . T A 0 PASS DP=71;GPV=1;SPV=0.060625;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:13,2:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
927 chr13 86756239 . C A 0 PASS DP=57;GPV=1;SPV=0.2416;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,4:6,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
928 chr13 87090543 . C CT 0 PASS DP=50;GPV=1;SPV=0.0092175;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:9,4:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
929 chr13 87331654 . C T 0 PASS DP=72;GPV=1;SPV=0.001382;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,6:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
930 chr13 87837249 . T TTCTCTCTCTC 0 PASS DP=30;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:3,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
931 chr13 88347891 . A AG 0 PASS DP=16;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:5,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
932 chr13 89527562 . C CTTTTCTTTTCT 0 PASS DP=40;GPV=1;SPV=0.0018592;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,8:5,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
933 chr13 90344571 . C CATATAT 0 PASS DP=34;GPV=1;SPV=0.04308;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
934 chr13 92064310 . C T 0 PASS DP=73;GPV=1;SPV=2.8865e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:16,10:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
935 chr13 93459617 . G A 0 PASS DP=67;GPV=1;SPV=8.3669e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:10,9:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
936 chr13 93495622 . TTTCTG T 0 PASS DP=25;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
937 chr13 94214796 . G A 0 PASS DP=57;GPV=1;SPV=0.00046384;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:8,8:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
938 chr13 94455381 . T TAG 0 PASS DP=46;GPV=1;SPV=0.035323;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:7,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
939 chr13 94738966 . A T 0 PASS DP=71;GPV=1;SPV=5.0918e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,4:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
940 chr13 96074548 . C T 0 PASS DP=38;GPV=1;SPV=0.018018;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
941 chr13 97852827 . G C 0 PASS DP=44;GPV=1;SPV=0.0063975;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,5:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
942 chr13 98064640 . C CTT 0 PASS DP=24;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:5,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
943 chr13 98078917 . A G 0 PASS DP=47;GPV=1;SPV=2.3919e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,14:4,6:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
944 chr13 98705202 . G A 0 PASS DP=30;GPV=1;SPV=0.034965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,7:1,1:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
945 chr13 101092811 . C T 0 PASS DP=54;GPV=1;SPV=0.0001513;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:6,4:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
946 chr13 101693624 . G GTCTGTCTA 0 PASS DP=42;GPV=1;SPV=0.036102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:3,5:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
947 chr13 102728046 . A G 0 PASS DP=46;GPV=1;SPV=0.0065417;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,8:4,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
948 chr13 104498343 . ATATATTTT A 0 PASS DP=25;GPV=1;SPV=0.0027765;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:1,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
949 chr13 106245764 . G T 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
950 chr13 106763047 . ACCCTCTCTCTCTCT A 0 PASS DP=43;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,4:6,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
951 chr13 107176318 . T A 0 PASS DP=43;GPV=1;SPV=0.010674;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
952 chr13 109147175 . GA G 0 PASS DP=34;GPV=1;SPV=0.055718;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
953 chr13 109765530 . A T 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
954 chr13 110960659 . GT G 0 PASS DP=48;GPV=1;SPV=0.057396;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:15,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
955 chr13 111622955 . C G 0 PASS DP=19;GPV=1;SPV=0.023736;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
956 chr13 112640591 . C T 0 PASS DP=19;GPV=1;SPV=0.010101;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,4:0,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
957 chr13 112787108 . C CG 0 PASS DP=54;GPV=1;SPV=0.031421;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
958 chr13 113512592 . C T 0 PASS DP=43;GPV=1;SPV=0.016558;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
959 chr13 113593081 . G A 0 PASS DP=33;GPV=1;SPV=0.016935;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,3:4,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
960 chr13 113804730 . C G 0 PASS DP=32;GPV=1;SPV=0.019346;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
961 chr14 16085235 . G T 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:4,4:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
962 chr14 18276446 . T C 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
963 chr14 18288630 . C T 0 PASS DP=54;GPV=1;SPV=0.044297;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:14,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
964 chr14 18293945 . G T 0 PASS DP=71;GPV=1;SPV=0.010989;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:10,5:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
965 chr14 18426424 . A T 0 PASS DP=64;GPV=1;SPV=0.03636;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,2:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
966 chr14 18529582 . A G 0 PASS DP=28;GPV=1;SPV=0.013155;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
967 chr14 18700193 . C T 0 PASS DP=54;GPV=1;SPV=0.022061;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:12,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
968 chr14 18939956 . CCTGA C 0 PASS DP=148;GPV=1;SPV=0.00027128;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:60,21:28,7:32,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
969 chr14 18969317 . G A 0 PASS DP=58;GPV=1;SPV=0.036102;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,7:8,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
970 chr14 18969319 . A G 0 PASS DP=65;GPV=1;SPV=0.009659;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:12,6:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
971 chr14 18974856 . T A 0 PASS DP=65;GPV=1;SPV=3.57e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:7,4:8,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
972 chr14 18979682 . G A 0 PASS DP=24;GPV=1;SPV=0.13043;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
973 chr14 19108286 . T C 0 PASS DP=82;GPV=1;SPV=0.0086983;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:16,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
974 chr14 19232448 . C T 0 PASS DP=42;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
975 chr14 19298439 . CT C 0 PASS DP=20;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,4:2,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
976 chr14 19301996 . A G 0 PASS DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:13,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
977 chr14 19372235 . G A 0 PASS DP=45;GPV=1;SPV=0.016655;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:7,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
978 chr14 19390940 . C A 0 PASS DP=37;GPV=1;SPV=0.033806;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
979 chr14 19475066 . T G 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
980 chr14 19667110 . T A 0 PASS DP=40;GPV=1;SPV=0.040303;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
981 chr14 19817651 . C T 0 PASS DP=57;GPV=1;SPV=2.5681e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,20:4,9:4,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
982 chr14 21222040 . CAA C 0 PASS DP=24;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:5,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
983 chr14 21696025 . GTT G 0 PASS DP=50;GPV=1;SPV=0.050152;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
984 chr14 22034527 . A ATTTTTT 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
985 chr14 22637442 . A C 0 PASS DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
986 chr14 23962302 . G A 0 PASS DP=39;GPV=1;SPV=0.026928;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:12,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
987 chr14 24719632 . ATG A 0 PASS DP=21;GPV=1;SPV=0.0089783;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,1:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
988 chr14 25523801 . CT C 0 PASS DP=27;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
989 chr14 26813631 . GT G 0 PASS DP=23;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:4,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
990 chr14 29466327 . TA T 0 PASS DP=48;GPV=1;SPV=0.037605;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:5,3:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
991 chr14 29826544 . G A 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:4,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
992 chr14 30445162 . GA G 0 PASS DP=54;GPV=1;SPV=0.00058755;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,7:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
993 chr14 31052934 . A AT 0 PASS DP=36;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
994 chr14 31933233 . ATT A 0 PASS DP=22;GPV=1;SPV=0.006192;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
995 chr14 32475678 . C CT 0 PASS DP=29;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
996 chr14 34702539 . AT A 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
997 chr14 34840768 . C A 0 PASS DP=48;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,2:0,1:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
998 chr14 35007749 . A AT 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
999 chr14 36122153 . A ATT 0 PASS DP=46;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,9:2,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1000 chr14 37200850 . ATG A 0 PASS DP=29;GPV=1;SPV=0.001204;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,7:0,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1001 chr14 39187659 . T C 0 PASS DP=42;GPV=1;SPV=0.025265;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1002 chr14 39300937 . TATATAC T 0 PASS DP=44;GPV=1;SPV=0.019016;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1003 chr14 39300953 . CAT C 0 PASS DP=44;GPV=1;SPV=0.047286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:10,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1004 chr14 39300963 . C T 0 PASS DP=48;GPV=1;SPV=0.046549;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,6:10,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1005 chr14 42051617 . T TA 0 PASS DP=35;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:4,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1006 chr14 42624923 . A G 0 PASS DP=60;GPV=1;SPV=7.799e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:8,8:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1007 chr14 43213467 . C T 0 PASS DP=64;GPV=1;SPV=3.148e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:9,11:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1008 chr14 43528639 . C T 0 PASS DP=73;GPV=1;SPV=1.537e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:12,6:10,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1009 chr14 45692176 . A G 0 PASS DP=42;GPV=1;SPV=0.037585;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,6:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1010 chr14 45887569 . T A 0 PASS DP=44;GPV=1;SPV=0.0076872;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:5,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1011 chr14 48767763 . A AT 0 PASS DP=56;GPV=1;SPV=0.043843;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,10:10,7:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1012 chr14 49960412 . C T 0 PASS DP=33;GPV=1;SPV=0.034533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:2,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1013 chr14 50224327 . A G 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1014 chr14 50236734 . A T 0 PASS DP=40;GPV=1;SPV=0.047431;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,3:3,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1015 chr14 50479008 . T G 0 PASS DP=40;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1016 chr14 50811544 . C CTT 0 PASS DP=23;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:5,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1017 chr14 56444101 . C T 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:2,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1018 chr14 56922072 . C CAT 0 PASS DP=30;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1019 chr14 57323176 . CAAAAAAAAAAAAAA C 0 PASS DP=27;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,7:2,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1020 chr14 60667650 . A AATAT 0 PASS DP=26;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:6,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1021 chr14 63439356 . T C 0 PASS DP=60;GPV=1;SPV=0.030658;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1022 chr14 63846582 . T TTTCTG 0 PASS DP=34;GPV=1;SPV=0.036101;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:6,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1023 chr14 64492119 . A C 0 PASS DP=33;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,2:1,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1024 chr14 64583073 . A T 0 PASS DP=40;GPV=1;SPV=0.0027027;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,5:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1025 chr14 64949722 . CA C 0 PASS DP=28;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:4,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1026 chr14 65247931 . C CACACAT 0 PASS DP=36;GPV=1;SPV=0.006031;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,12:5,7:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1027 chr14 65266406 . T A 0 PASS DP=39;GPV=1;SPV=0.030303;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,4:1,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1028 chr14 66516183 . T A 0 PASS DP=51;GPV=1;SPV=0.00016223;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,2:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1029 chr14 67780754 . G A 0 PASS DP=56;GPV=1;SPV=8.1801e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,19:6,13:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1030 chr14 67803228 . C T 0 PASS DP=48;GPV=1;SPV=0.076832;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1031 chr14 69654792 . T G 0 PASS DP=36;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1032 chr14 69745994 . T TACAC 0 PASS DP=38;GPV=1;SPV=0.020719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:5,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1033 chr14 70710663 . CTTTCT C 0 PASS DP=35;GPV=1;SPV=0.058162;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:1,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1034 chr14 70710706 . TTC T 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:1,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1035 chr14 71906790 . A T 0 PASS DP=31;GPV=1;SPV=0.0081121;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:7,5:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1036 chr14 71906791 . G GAAAAGCATATGCTGAAAAGCATAATACTTTTTA 0 PASS DP=29;GPV=1;SPV=0.0020704;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:6,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1037 chr14 73536516 . T TA 0 PASS DP=47;GPV=1;SPV=0.014845;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1038 chr14 74014389 . C A 0 PASS DP=62;GPV=1;SPV=0.14744;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:24,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1039 chr14 74520801 . AAATG A 0 PASS DP=62;GPV=1;SPV=0.0079392;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,6:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1040 chr14 74868313 . TTATA T 0 PASS DP=21;GPV=1;SPV=0.14141;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1041 chr14 75153777 . C CTTTTTTTTT 0 PASS DP=36;GPV=1;SPV=0.045968;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:6,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1042 chr14 75257469 . G A 0 PASS DP=66;GPV=1;SPV=0.00012491;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:13,8:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1043 chr14 79233666 . C CTG 0 PASS DP=47;GPV=1;SPV=0.0036809;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1044 chr14 79233730 . A C 0 PASS DP=41;GPV=1;SPV=0.0041486;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:7,4:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1045 chr14 79343870 . C A 0 PASS DP=71;GPV=1;SPV=2.537e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:13,9:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1046 chr14 80195814 . TA T 0 PASS DP=40;GPV=1;SPV=0.00021796;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:8,9:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1047 chr14 81572276 . T A 0 PASS DP=31;GPV=1;SPV=0.060215;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1048 chr14 82823662 . C A 0 PASS DP=49;GPV=1;SPV=0.00063642;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,3:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1049 chr14 83327150 . C T 0 PASS DP=59;GPV=1;SPV=0.0016044;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:7,5:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1050 chr14 83577812 . G GAT 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1051 chr14 83936135 . AAG A 0 PASS DP=31;GPV=1;SPV=0.029654;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:3,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1052 chr14 84703045 . GATATAT G 0 PASS DP=44;GPV=1;SPV=0.019067;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1053 chr14 85440994 . C CT 0 PASS DP=24;GPV=1;SPV=0.0091533;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:6,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1054 chr14 85470210 . T C 0 PASS DP=42;GPV=1;SPV=1.7795e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:6,23:2,14:4,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1055 chr14 87551018 . A T 0 PASS DP=60;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1056 chr14 88484211 . CTAT C 0 PASS DP=39;GPV=1;SPV=0.033935;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1057 chr14 88716732 . AAC A 0 PASS DP=35;GPV=1;SPV=0.00049132;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,12:3,8:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1058 chr14 90237501 . A AAGG 0 PASS DP=39;GPV=1;SPV=0.0043369;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,12:3,5:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1059 chr14 90983813 . C CTCTCTG 0 PASS DP=40;GPV=1;SPV=0.035372;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:7,2:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1060 chr14 91572426 . CT C 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1061 chr14 91661524 . C CAT 0 PASS DP=46;GPV=1;SPV=0.0015312;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,9:4,6:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1062 chr14 92808663 . G GT 0 PASS DP=42;GPV=1;SPV=0.00024986;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:6,7:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1063 chr14 92808701 . G GA 0 PASS DP=39;GPV=1;SPV=0.0011741;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,11:8,5:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1064 chr14 93357775 . G A 0 PASS DP=25;GPV=1;SPV=0.014142;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:0,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1065 chr14 94533813 . TAA T 0 PASS DP=44;GPV=1;SPV=0.055478;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,6:10,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1066 chr14 95476466 . C T 0 PASS DP=70;GPV=1;SPV=0.0024931;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1067 chr14 97068412 . CT C 0 PASS DP=34;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:3,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1068 chr14 97154203 . TTTCCTTCCTTCC T 0 PASS DP=32;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:0,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1069 chr14 97193720 . A AT 0 PASS DP=53;GPV=1;SPV=0.00067301;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:8,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1070 chr14 99130508 . GAA G 0 PASS DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:7,7:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1071 chr14 99811184 . T G 0 PASS DP=48;GPV=1;SPV=9.8865e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:5,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1072 chr14 99846281 . A ATTTT 0 PASS DP=34;GPV=1;SPV=0.010024;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:11,9:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1073 chr14 101397815 . T C 0 PASS DP=28;GPV=1;SPV=0.0078215;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:8,4:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1074 chr14 101397817 . T C 0 PASS DP=27;GPV=1;SPV=0.037198;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1075 chr14 101674930 . T C 0 PASS DP=51;GPV=1;SPV=0.031763;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:12,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1076 chr14 101942512 . CA C 0 PASS DP=38;GPV=1;SPV=0.0025217;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1077 chr14 102202372 . GT G 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1078 chr14 104097956 . G A 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:2,2:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1079 chr14 105598771 . C T 0 PASS DP=53;GPV=1;SPV=0.016371;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1080 chr14 105927535 . AGG A 0 PASS DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1081 chr14 106419214 . G A 0 PASS DP=25;GPV=1;SPV=0.0065876;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1082 chr14 106459602 . C CT 0 PASS DP=27;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,8:1,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1083 chr15 17745729 . G A 0 PASS DP=25;GPV=1;SPV=0.040316;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1084 chr15 18358341 . A G 0 PASS DP=44;GPV=1;SPV=0.031815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1085 chr15 18749305 . A G 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1086 chr15 19910197 . C T 0 PASS DP=72;GPV=1;SPV=6.3405e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:9,10:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1087 chr15 20170452 . C A 0 PASS DP=82;GPV=1;SPV=0.036717;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:13,7:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1088 chr15 20247398 . C A 0 PASS DP=86;GPV=1;SPV=0.036143;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:10,3:28,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1089 chr15 20336424 . G A 0 PASS DP=50;GPV=1;SPV=0.0036197;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:6,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1090 chr15 20336442 . G GTTTTTTGTTT 0 PASS DP=46;GPV=1;SPV=0.0073947;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:6,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1091 chr15 20347933 . G A 0 PASS DP=105;GPV=1;SPV=0.020231;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:21,5:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1092 chr15 20355877 . C CTTTCTTTCTTTTTTTT 0 PASS DP=70;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,4:15,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1093 chr15 20550951 . G A 0 PASS DP=32;GPV=1;SPV=0.04308;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1094 chr15 20582882 . T C 0 PASS DP=90;GPV=1;SPV=0.049331;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:40,12:17,9:23,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1095 chr15 20670150 . T C 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1096 chr15 21254323 . C T 0 PASS DP=44;GPV=1;SPV=0.014276;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1097 chr15 22422812 . C T 0 PASS DP=50;GPV=1;SPV=0.024399;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,6:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1098 chr15 22444687 . G C 0 PASS DP=72;GPV=1;SPV=0.016949;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:16,9:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1099 chr15 22949262 . TGCCTAAGCCTAAAGCGGGGACCAGGCGGGCCGGAAGGCGGGCACAATGC T 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:12,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1100 chr15 23217430 . ATTT A 0 PASS DP=39;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,5:10,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1101 chr15 24080017 . C T 0 PASS DP=57;GPV=1;SPV=2.7719e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:6,3:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1102 chr15 24334109 . G A 0 PASS DP=74;GPV=1;SPV=0.085094;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:19,1:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1103 chr15 25132879 . CA C 0 PASS DP=29;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1104 chr15 26251855 . A T 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1105 chr15 28422218 . A G 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:2,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1106 chr15 28493416 . T C 0 PASS DP=217;GPV=1;SPV=0.032621;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:110,13:66,7:44,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1107 chr15 29057406 . A C 0 PASS DP=59;GPV=1;SPV=7.6729e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1108 chr15 30524903 . G A 0 PASS DP=73;GPV=1;SPV=0.020062;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,5:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1109 chr15 30691517 . C T 0 PASS DP=55;GPV=1;SPV=0.025964;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1110 chr15 31165579 . C CTT 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1111 chr15 31567594 . C T 0 PASS DP=66;GPV=1;SPV=0.00058845;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:19,10:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1112 chr15 32044253 . C CTCCTTCCTTCCTTCCTTCCT 0 PASS DP=35;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,5:5,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1113 chr15 32162135 . C T 0 PASS DP=43;GPV=1;SPV=0.011004;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:13,6:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1114 chr15 32181183 . A G 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1115 chr15 32580639 . C G 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1116 chr15 33343334 . T A 0 PASS DP=63;GPV=1;SPV=1.022e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:11,13:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1117 chr15 33889981 . G A 0 PASS DP=67;GPV=1;SPV=1.4224e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:8,7:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1118 chr15 34053319 . A AATAT 0 PASS DP=18;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1119 chr15 34423155 . A G 0 PASS DP=60;GPV=1;SPV=0.1208;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:19,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1120 chr15 34543009 . T C 0 PASS DP=29;GPV=1;SPV=0.031059;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1121 chr15 34949276 . A ATGAGCCACTACACTGGGCC 0 PASS DP=28;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1122 chr15 35482218 . T G 0 PASS DP=66;GPV=1;SPV=3.4893e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:12,5:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1123 chr15 36178301 . A AT 0 PASS DP=60;GPV=1;SPV=0.00085567;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:9,7:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1124 chr15 36278095 . CATAT C 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1125 chr15 36286610 . G A 0 PASS DP=30;GPV=1;SPV=0.0090312;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1126 chr15 36471641 . C CAAA 0 PASS DP=32;GPV=1;SPV=0.10134;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:11,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1127 chr15 36722985 . G GTGTGTGTGTGTT 0 PASS DP=72;GPV=1;SPV=0.10396;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,5:11,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1128 chr15 40504337 . G GTGTATATA 0 PASS DP=70;GPV=1;SPV=0.035289;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,6:9,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1129 chr15 40951605 . A C 0 PASS DP=23;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,2:0,0:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1130 chr15 41179528 . A AAAGGAAGGAAGGAAGG 0 PASS DP=35;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:4,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1131 chr15 42789854 . T TACACACACACAC 0 PASS DP=49;GPV=1;SPV=0.00026695;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:8,7:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1132 chr15 45934450 . G A 0 PASS DP=54;GPV=1;SPV=0.00070687;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1133 chr15 48314237 . C T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1134 chr15 48435768 . GTA G 0 PASS DP=26;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,5:2,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1135 chr15 50874129 . C T 0 PASS DP=38;GPV=1;SPV=0.0074524;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:3,4:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1136 chr15 51583106 . CT C 0 PASS DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1137 chr15 51747017 . T TA 0 PASS DP=25;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1138 chr15 51912441 . T A 0 PASS DP=49;GPV=1;SPV=0.08867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1139 chr15 52462280 . G A 0 PASS DP=48;GPV=1;SPV=0.034205;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,4:2,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1140 chr15 55518897 . C A 0 PASS DP=49;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,4:6,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1141 chr15 55778195 . C CTCTT 0 PASS DP=30;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1142 chr15 56312269 . C T 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:4,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1143 chr15 57007764 . TTCTTTCTTTCTTTCTTTCTTTCTTTCTC T 0 PASS DP=27;GPV=1;SPV=0.059289;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:0,0:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1144 chr15 57223643 . GTTT G 0 PASS DP=34;GPV=1;SPV=0.1532;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:9,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1145 chr15 57336148 . CT C 0 PASS DP=23;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:3,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1146 chr15 59093361 . T TC 0 PASS DP=24;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:3,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1147 chr15 59359330 . T A 0 PASS DP=32;GPV=1;SPV=0.0023112;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1148 chr15 59719506 . CAAAA C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1149 chr15 60009125 . A T 0 PASS DP=65;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:35:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1150 chr15 60132343 . GGGA G 0 PASS DP=23;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,2:3,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1151 chr15 60993644 . CA C 0 PASS DP=33;GPV=1;SPV=0.0099161;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,10:3,9:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1152 chr15 61451616 . T TTTTTTC 0 PASS DP=27;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:2,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1153 chr15 62096613 . AT A 0 PASS DP=51;GPV=1;SPV=0.00077001;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1154 chr15 64718753 . G GGTGTGTGTGTGT 0 PASS DP=35;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:8,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1155 chr15 66432959 . A AGTGTGT 0 PASS DP=36;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:6,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1156 chr15 67055971 . C CAA 0 PASS DP=38;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:7,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1157 chr15 68741633 . C CA 0 PASS DP=27;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:5,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1158 chr15 69078387 . C T 0 PASS DP=45;GPV=1;SPV=0.0072477;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:7,2:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1159 chr15 72665570 . A G 0 PASS DP=47;GPV=1;SPV=0.010436;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,3:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1160 chr15 74073767 . C T 0 PASS DP=20;GPV=1;SPV=0.049123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1161 chr15 76330727 . T TTA 0 PASS DP=42;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,6:1,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1162 chr15 76572915 . T TCACACA 0 PASS DP=35;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,9:2,3:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1163 chr15 77024962 . G A 0 PASS DP=62;GPV=1;SPV=1.4083e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:9,8:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1164 chr15 77343482 . CTTTT C 0 PASS DP=46;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,6:2,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1165 chr15 77509555 . CGTGTGT C 0 PASS DP=37;GPV=1;SPV=0.027772;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:4,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1166 chr15 77883340 . C G 0 PASS DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1167 chr15 78215763 . A G 0 PASS DP=48;GPV=1;SPV=0.069354;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:17,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1168 chr15 78877117 . T A 0 PASS DP=30;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1169 chr15 80339873 . G A 0 PASS DP=65;GPV=1;SPV=0.0014199;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:12,4:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1170 chr15 80382911 . C CAATA 0 PASS DP=41;GPV=1;SPV=0.027154;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1171 chr15 81179982 . CT C 0 PASS DP=38;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1172 chr15 82383908 . T A 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1173 chr15 82427338 . CTCTT C 0 PASS DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:6,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1174 chr15 82523942 . A G 0 PASS DP=25;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1175 chr15 82916807 . A AT 0 PASS DP=56;GPV=1;SPV=0.011338;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1176 chr15 83417902 . T TA 0 PASS DP=41;GPV=1;SPV=0.01095;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,10:5,8:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1177 chr15 83822769 . C T 0 PASS DP=66;GPV=1;SPV=2.1474e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:8,7:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1178 chr15 84419727 . G A 0 PASS DP=67;GPV=1;SPV=0.0219;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:10,7:4,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1179 chr15 84425290 . C T 0 PASS DP=61;GPV=1;SPV=0.014936;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1180 chr15 85151765 . CAA C 0 PASS DP=24;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:4,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1181 chr15 85504515 . A C 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1182 chr15 85841139 . A ATTTTT 0 PASS DP=40;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1183 chr15 86380935 . A AGTGTGT 0 PASS DP=56;GPV=1;SPV=0.0010872;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1184 chr15 86703427 . C T 0 PASS DP=57;GPV=1;SPV=8.1679e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,4:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1185 chr15 86826036 . C CA 0 PASS DP=41;GPV=1;SPV=0.0076326;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,15:8,9:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1186 chr15 87055660 . A C 0 PASS DP=70;GPV=1;SPV=3.3351e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:12,8:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1187 chr15 89354401 . CTT C 0 PASS DP=24;GPV=1;SPV=0.043512;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,5:2,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1188 chr15 89952550 . CA C 0 PASS DP=26;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1189 chr15 90175683 . CT C 0 PASS DP=43;GPV=1;SPV=0.0015067;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1190 chr15 90407221 . T C 0 PASS DP=71;GPV=1;SPV=0.0005505;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:16,3:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1191 chr15 90651919 . CT C 0 PASS DP=26;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:5,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1192 chr15 90735236 . AAT A 0 PASS DP=32;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,12:2,9:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1193 chr15 91420126 . CTG C 0 PASS DP=52;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1194 chr15 92587513 . C CAAAAA 0 PASS DP=49;GPV=1;SPV=0.013891;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:9,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1195 chr15 92767870 . C T 0 PASS DP=54;GPV=1;SPV=0.017924;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1196 chr15 92999083 . CA C 0 PASS DP=27;GPV=1;SPV=0.015182;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1197 chr15 93677756 . A T 0 PASS DP=42;GPV=1;SPV=0.027339;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1198 chr15 93940288 . AAAAG A 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:2,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1199 chr15 94162144 . T C 0 PASS DP=33;GPV=1;SPV=0.024497;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1200 chr15 96447738 . TATC T 0 PASS DP=51;GPV=1;SPV=0.013865;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:8,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1201 chr15 96857600 . C CAAAAAA 0 PASS DP=37;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:9,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1202 chr15 96865316 . G A 0 PASS DP=60;GPV=1;SPV=0.1208;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1203 chr15 99085857 . T G 0 PASS DP=66;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1204 chr15 100759176 . A T 0 PASS DP=57;GPV=1;SPV=1.3625e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:10,8:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1205 chr15 101258008 . CTT C 0 PASS DP=36;GPV=1;SPV=0.039412;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1206 chr15 101743927 . C CTCTT 0 PASS DP=75;GPV=1;SPV=0.04982;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:15,1:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1207 chr16 1833555 . T C 0 PASS DP=35;GPV=1;SPV=0.064336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:11,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1208 chr16 2542624 . A G 0 PASS DP=53;GPV=1;SPV=0.028132;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1209 chr16 3329169 . G GACACAC 0 PASS DP=20;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,6:1,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1210 chr16 3889002 . G T 0 PASS DP=64;GPV=1;SPV=0.00013223;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:6,2:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1211 chr16 5801341 . C CT 0 PASS DP=32;GPV=1;SPV=0.020486;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1212 chr16 6134683 . A ATTTTTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1213 chr16 6220657 . T A 0 PASS DP=41;GPV=1;SPV=0.013378;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1214 chr16 6367254 . G GTTTTGT 0 PASS DP=59;GPV=1;SPV=0.0019606;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:15,17:6,9:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1215 chr16 6562757 . T A 0 PASS DP=53;GPV=1;SPV=0.0043971;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,1:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1216 chr16 8563144 . AG A 0 PASS DP=65;GPV=1;SPV=0.024978;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:13,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1217 chr16 9019654 . T A 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1218 chr16 9199895 . GTCCT G 0 PASS DP=22;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,5:2,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1219 chr16 10612629 . A AG 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:9,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1220 chr16 11067187 . TTG T 0 PASS DP=38;GPV=1;SPV=0.13514;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:9,2:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1221 chr16 11505470 . T C 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,2:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1222 chr16 11712929 . A AACACACACACACAC 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1223 chr16 12105223 . C T 0 PASS DP=24;GPV=1;SPV=0.10145;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1224 chr16 12380394 . C A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1225 chr16 12817263 . CT C 0 PASS DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1226 chr16 14360253 . C CCA 0 PASS DP=38;GPV=1;SPV=0.00026837;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,11:3,8:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1227 chr16 14978118 . G A 0 PASS DP=112;GPV=1;SPV=0.049005;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:28,7:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1228 chr16 15164208 . A ATTTTTTT 0 PASS DP=28;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:1,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1229 chr16 15175445 . G A 0 PASS DP=90;GPV=1;SPV=0.039721;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:13,7:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1230 chr16 15857202 . T C 0 PASS DP=52;GPV=1;SPV=0.022078;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,6:14,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1231 chr16 15861496 . A G 0 PASS DP=34;GPV=1;SPV=0.098383;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:5,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1232 chr16 16139611 . C CAA 0 PASS DP=31;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:4,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1233 chr16 16274259 . T TTGGA 0 PASS DP=57;GPV=1;SPV=0.038169;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:5,3:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1234 chr16 16462130 . G C 0 PASS DP=40;GPV=1;SPV=0.0070044;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1235 chr16 16464052 . G GTGTGTT 0 PASS DP=48;GPV=1;SPV=0.015379;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:4,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1236 chr16 16602352 . T G 0 PASS DP=40;GPV=1;SPV=8.1261e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:8,10:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1237 chr16 16918059 . C T 0 PASS DP=61;GPV=1;SPV=3.3463e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:8,7:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1238 chr16 17044323 . C T 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1239 chr16 18121796 . GGTTT G 0 PASS DP=83;GPV=1;SPV=0.037048;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:22,5:21,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1240 chr16 18130476 . TAAAAAA T 0 PASS DP=27;GPV=1;SPV=0.018634;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:2,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1241 chr16 18144826 . CT C 0 PASS DP=26;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1242 chr16 19101995 . CTTTT C 0 PASS DP=22;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,5:3,3:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1243 chr16 19162689 . C T 0 PASS DP=54;GPV=1;SPV=0.02313;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1244 chr16 20195336 . A AATTT 0 PASS DP=38;GPV=1;SPV=0.01192;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:3,3:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1245 chr16 20295279 . C CTT 0 PASS DP=23;GPV=1;SPV=0.00761;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,8:1,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1246 chr16 20489820 . C T 0 PASS DP=55;GPV=1;SPV=0.028251;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1247 chr16 20545378 . G A 0 PASS DP=60;GPV=1;SPV=0.0022994;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:15,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1248 chr16 20596673 . G A 0 PASS DP=74;GPV=1;SPV=0.085094;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:26,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1249 chr16 21269193 . G T 0 PASS DP=38;GPV=1;SPV=0.010026;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1250 chr16 21307622 . GTATATA G 0 PASS DP=43;GPV=1;SPV=0.0055997;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,9:2,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1251 chr16 21354148 . C T 0 PASS DP=63;GPV=1;SPV=0.011503;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,1:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1252 chr16 22469165 . C T 0 PASS DP=39;GPV=1;SPV=0.022366;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1253 chr16 22553505 . A G 0 PASS DP=77;GPV=1;SPV=0.023251;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:18,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1254 chr16 22632007 . CTATA C 0 PASS DP=43;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,9:5,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1255 chr16 23875759 . T C 0 PASS DP=58;GPV=1;SPV=0.021895;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:9,6:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1256 chr16 24479358 . T C 0 PASS DP=24;GPV=1;SPV=0.13043;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1257 chr16 24579241 . G GTTTTTT 0 PASS DP=43;GPV=1;SPV=0.19016;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,5:20,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1258 chr16 26887122 . G A 0 PASS DP=28;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:6,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1259 chr16 28162560 . A AT 0 PASS DP=52;GPV=1;SPV=0.085726;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:17,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1260 chr16 29482918 . T G 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1261 chr16 29648003 . T TTG 0 PASS DP=25;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:2,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1262 chr16 30032642 . GT G 0 PASS DP=33;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1263 chr16 30342200 . A AT 0 PASS DP=25;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1264 chr16 32125849 . GT G 0 PASS DP=80;GPV=1;SPV=0.0053747;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,4:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1265 chr16 32176170 . C A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1266 chr16 32465038 . G A 0 PASS DP=73;GPV=1;SPV=0.021299;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:15,3:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1267 chr16 32837836 . G C 0 PASS DP=230;GPV=1;SPV=0.021664;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:106,23:69,20:37,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1268 chr16 32838865 . A G 0 PASS DP=312;GPV=1;SPV=0.024159;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:146,19:81,14:65,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1269 chr16 32839745 . G A 0 PASS DP=189;GPV=1;SPV=0.0027228;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:80,15:47,9:33,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1270 chr16 33049073 . GA G 0 PASS DP=45;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:21,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1271 chr16 33506889 . TAAAAAA T 0 PASS DP=40;GPV=1;SPV=0.038556;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1272 chr16 33543309 . C G 0 PASS DP=154;GPV=1;SPV=0.024242;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:53,12:21,8:32,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1273 chr16 33912493 . T C 0 PASS DP=88;GPV=1;SPV=0.013578;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:17,1:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1274 chr16 34585666 . C A 0 PASS DP=7755;GPV=1;SPV=0.025427;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:3857:3455,402:2115,221:1340,181
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1275 chr16 34811099 . G A 0 PASS DP=66;GPV=1;SPV=0.0003763;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:13,4:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1276 chr16 35340267 . C A 0 PASS DP=57;GPV=1;SPV=4.1874e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,6:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1277 chr16 37852470 . G T 0 PASS DP=229;GPV=1;SPV=0.029413;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:99,17:30,5:69,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1278 chr16 37878930 . C T 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1279 chr16 46460582 . A G 0 PASS DP=129;GPV=1;SPV=0.023263;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:25,12:27,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1280 chr16 48416181 . T A 0 PASS DP=49;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1281 chr16 49058614 . AT A 0 PASS DP=25;GPV=1;SPV=0.27198;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1282 chr16 49702923 . A G 0 PASS DP=68;GPV=1;SPV=0.064294;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:9,2:22,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1283 chr16 50938942 . C T 0 PASS DP=73;GPV=1;SPV=4.0799e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:14,6:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1284 chr16 51663775 . G T 0 PASS DP=69;GPV=1;SPV=5.9786e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:7,3:16,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1285 chr16 52826730 . AGT A 0 PASS DP=31;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:2,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1286 chr16 53403333 . G C 0 PASS DP=60;GPV=1;SPV=0.0021291;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1287 chr16 53551675 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.012836;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:2,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1288 chr16 54680831 . A ATACATGTATGTG 0 PASS DP=26;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:3,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1289 chr16 55472560 . TAAAAAAAAA T 0 PASS DP=21;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:5,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1290 chr16 56300008 . C CGTGT 0 PASS DP=40;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:7,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1291 chr16 57002644 . TG T 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1292 chr16 58085568 . A ATTTTTTTT 0 PASS DP=35;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1293 chr16 59312571 . T TTC 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:2,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1294 chr16 59312572 . C T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,0:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1295 chr16 59858527 . G A 0 PASS DP=58;GPV=1;SPV=3.7587e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1296 chr16 60311989 . G T 0 PASS DP=54;GPV=1;SPV=0.00078689;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,14:13,6:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1297 chr16 61428604 . CTTT C 0 PASS DP=37;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1298 chr16 62079731 . CT C 0 PASS DP=28;GPV=1;SPV=0.0078215;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:8,6:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1299 chr16 62486857 . A C 0 PASS DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,3:4,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1300 chr16 62658786 . G A 0 PASS DP=55;GPV=1;SPV=1.1853e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:8,6:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1301 chr16 63024573 . A G 0 PASS DP=63;GPV=1;SPV=6.6009e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,3:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1302 chr16 64370054 . G GCACACACA 0 PASS DP=51;GPV=1;SPV=0.021468;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,8:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1303 chr16 64398295 . C T 0 PASS DP=62;GPV=1;SPV=0.00016426;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:15,5:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1304 chr16 69944708 . T C 0 PASS DP=49;GPV=1;SPV=0.04269;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1305 chr16 70050982 . T C 0 PASS DP=42;GPV=1;SPV=0.13415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:3,1:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1306 chr16 71022770 . G A 0 PASS DP=54;GPV=1;SPV=0.028482;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1307 chr16 71832216 . G A 0 PASS DP=20;GPV=1;SPV=0.057792;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1308 chr16 74423310 . C T 0 PASS DP=55;GPV=1;SPV=0.051458;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1309 chr16 74495106 . CT C 0 PASS DP=21;GPV=1;SPV=0.016783;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:3,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1310 chr16 74502722 . GT G 0 PASS DP=24;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,9:2,4:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1311 chr16 74821501 . A G 0 PASS DP=61;GPV=1;SPV=0.00011781;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:10,3:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1312 chr16 75180991 . A AAAG 0 PASS DP=45;GPV=1;SPV=0.0067977;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:3,1:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1313 chr16 75732085 . CAA C 0 PASS DP=25;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:2,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1314 chr16 75939212 . G A 0 PASS DP=64;GPV=1;SPV=0.001906;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1315 chr16 78078648 . G A 0 PASS DP=40;GPV=1;SPV=0.032417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1316 chr16 80672318 . T TACACAC 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1317 chr16 81280320 . CACAG C 0 PASS DP=18;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:1,1:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1318 chr16 81376465 . ATGTG A 0 PASS DP=32;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,6:4,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1319 chr16 84013729 . CT C 0 PASS DP=50;GPV=1;SPV=0.016727;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:8,9:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1320 chr16 84940732 . C T 0 PASS DP=75;GPV=1;SPV=0.0056634;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:16,6:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1321 chr16 86197778 . G GTGTGTGTGT 0 PASS DP=43;GPV=1;SPV=0.0023232;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,11:3,3:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1322 chr16 87013968 . TTCCCTCATTCAC T 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1323 chr16 87562669 . A ATTTT 0 PASS DP=37;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,8:4,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1324 chr16 87564563 . T G 0 PASS DP=48;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:24:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1325 chr16 88728472 . G A 0 PASS DP=43;GPV=1;SPV=0.12479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:3,1:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1326 chr16 89426529 . T TCACA 0 PASS DP=42;GPV=1;SPV=0.0065388;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:8,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1327 chr16 90207896 . A AG 0 PASS DP=36;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1328 chr17 243024 . T A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1329 chr17 515956 . CT C 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1330 chr17 579185 . C A 0 PASS DP=27;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1331 chr17 605741 . G T 0 PASS DP=22;GPV=1;SPV=0.0037594;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:3,9:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1332 chr17 1417665 . C CTT 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:7,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1333 chr17 2509676 . G A 0 PASS DP=71;GPV=1;SPV=2.7714e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:13,8:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1334 chr17 2760947 . CT C 0 PASS DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:4,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1335 chr17 2872213 . C CA 0 PASS DP=19;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1336 chr17 2979460 . GT G 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1337 chr17 4215925 . A T 0 PASS DP=71;GPV=1;SPV=0.0097246;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:12,4:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1338 chr17 4747337 . C CA 0 PASS DP=37;GPV=1;SPV=0.0050388;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:9,3:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1339 chr17 7676333 . CCTCCAGGT C 0 PASS DP=51;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,4:1,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1340 chr17 7714124 . C CGT 0 PASS DP=37;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,9:5,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1341 chr17 8299542 . T TA 0 PASS DP=39;GPV=1;SPV=0.00756;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:5,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1342 chr17 8401335 . A C 0 PASS DP=47;GPV=1;SPV=0.023384;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,7:5,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1343 chr17 9754279 . CT C 0 PASS DP=54;GPV=1;SPV=0.055494;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1344 chr17 9773741 . T TC 0 PASS DP=44;GPV=1;SPV=0.0018566;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,9:3,1:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1345 chr17 10363315 . C CA 0 PASS DP=30;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:5,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1346 chr17 11543910 . CA C 0 PASS DP=37;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1347 chr17 12020110 . C T 0 PASS DP=68;GPV=1;SPV=0.001198;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:15,5:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1348 chr17 12676253 . A G 0 PASS DP=39;GPV=1;SPV=0.036102;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1349 chr17 13235142 . AGTGTGTGT A 0 PASS DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1350 chr17 13595847 . G T 0 PASS DP=36;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:5,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1351 chr17 14694438 . G A 0 PASS DP=41;GPV=1;SPV=0.062963;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:7,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1352 chr17 14876514 . A T 0 PASS DP=51;GPV=1;SPV=0.0039329;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,5:5,1:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1353 chr17 15264253 . GAT G 0 PASS DP=53;GPV=1;SPV=0.15598;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:17,1:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1354 chr17 15264255 . T TAG 0 PASS DP=50;GPV=1;SPV=0.021691;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,5:6,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1355 chr17 15810688 . T TAC 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1356 chr17 15810734 . CATGTGTGT C 0 PASS DP=26;GPV=1;SPV=0.10577;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:2,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1357 chr17 15826095 . G GT 0 PASS DP=23;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:5,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1358 chr17 16161240 . C G 0 PASS DP=47;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1359 chr17 16812494 . G GCTGCTGGAGGAGTTCCCATCCCTGCAGGTGT 0 PASS DP=36;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1360 chr17 18436242 . C T 0 PASS DP=61;GPV=1;SPV=0.038781;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:7,5:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1361 chr17 19638169 . TACAC T 0 PASS DP=30;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,11:3,7:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1362 chr17 20393023 . A G 0 PASS DP=69;GPV=1;SPV=0.038786;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:18,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1363 chr17 20490397 . C T 0 PASS DP=40;GPV=1;SPV=0.023562;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1364 chr17 20579254 . C A 0 PASS DP=75;GPV=1;SPV=0.028543;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:16,5:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1365 chr17 21569888 . G GTGTGTGTGTGTGTA 0 PASS DP=36;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:0,10:0,6:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1366 chr17 21665064 . A G 0 PASS DP=115;GPV=1;SPV=0.026358;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:21,7:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1367 chr17 21987851 . AAG A 0 PASS DP=48;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:8,6:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1368 chr17 22823512 . G A 0 PASS DP=181;GPV=1;SPV=0.020573;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:78,13:21,5:57,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1369 chr17 22868198 . T A 0 PASS DP=40;GPV=1;SPV=0.046053;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:12,3:5,1:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1370 chr17 22912586 . C T 0 PASS DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1371 chr17 22953324 . G A 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1372 chr17 26738747 . T C 0 PASS DP=69;GPV=1;SPV=0.032184;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:19,8:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1373 chr17 26750226 . G A 0 PASS DP=145;GPV=1;SPV=0.011419;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:61,8:11,1:50,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1374 chr17 26750553 . TA T 0 PASS DP=90;GPV=1;SPV=0.014972;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:15,4:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1375 chr17 26750627 . G C 0 PASS DP=81;GPV=1;SPV=0.044441;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:18,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1376 chr17 26756863 . G A 0 PASS DP=121;GPV=1;SPV=0.01171;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:49,18:18,9:31,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1377 chr17 26777173 . C A 0 PASS DP=189;GPV=1;SPV=0.045845;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:74,17:35,9:39,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1378 chr17 26846954 . C G 0 PASS DP=38;GPV=1;SPV=0.048755;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1379 chr17 26953277 . A G 0 PASS DP=311;GPV=1;SPV=0.0092;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:130,18:49,6:81,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1380 chr17 26958286 . G A 0 PASS DP=275;GPV=1;SPV=0.046035;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:131,16:61,4:70,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1381 chr17 26958523 . A T 0 PASS DP=128;GPV=1;SPV=0.009667;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:56,9:28,3:28,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1382 chr17 29424436 . C CA 0 PASS DP=33;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1383 chr17 29743907 . C CT 0 PASS DP=24;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:4,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1384 chr17 31537633 . C T 0 PASS DP=62;GPV=1;SPV=0.0031736;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,5:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1385 chr17 31675974 . G A 0 PASS DP=28;GPV=1;SPV=0.023188;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1386 chr17 31866887 . C CAA 0 PASS DP=26;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1387 chr17 34754836 . GCTTAC G 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1388 chr17 35530512 . GA G 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:13,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1389 chr17 35581299 . T A 0 PASS DP=27;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1390 chr17 35871916 . AT A 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1391 chr17 36270978 . C A 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:24,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1392 chr17 36536524 . CT C 0 PASS DP=28;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:5,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1393 chr17 37439942 . A AT 0 PASS DP=46;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,4:6,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1394 chr17 39153334 . G GGTGTGTGTGTGT 0 PASS DP=34;GPV=1;SPV=0.092234;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:4,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1395 chr17 40728399 . C CT 0 PASS DP=23;GPV=1;SPV=0.0079051;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1396 chr17 40815568 . TA T 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1397 chr17 41225342 . C A 0 PASS DP=47;GPV=1;SPV=0.004375;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,18:7,11:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1398 chr17 41226775 . G T 0 PASS DP=67;GPV=1;SPV=0.033503;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:4,3:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1399 chr17 41733052 . T TTTTG 0 PASS DP=28;GPV=1;SPV=0.03835;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1400 chr17 41928852 . T TAA 0 PASS DP=40;GPV=1;SPV=0.0074142;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,13:2,10:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1401 chr17 42973190 . T TG 0 PASS DP=26;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:5,3:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1402 chr17 43177572 . A C 0 PASS DP=39;GPV=1;SPV=0.097251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,4:10,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1403 chr17 45250258 . TAC T 0 PASS DP=34;GPV=1;SPV=0.0042363;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,7:4,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1404 chr17 45757480 . C CA 0 PASS DP=27;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:5,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1405 chr17 47890931 . C CA 0 PASS DP=42;GPV=1;SPV=0.0057417;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,8:4,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1406 chr17 48985838 . C A 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1407 chr17 49553043 . CCACA C 0 PASS DP=41;GPV=1;SPV=0.025565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:5,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1408 chr17 51849183 . GTA G 0 PASS DP=27;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,7:2,2:0,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1409 chr17 53025193 . T TTC 0 PASS DP=32;GPV=1;SPV=0.0038647;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,13:2,5:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1410 chr17 53334019 . T TAC 0 PASS DP=35;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:3,11:3,7:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1411 chr17 53702004 . AT A 0 PASS DP=36;GPV=1;SPV=0.039412;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1412 chr17 54593370 . G T 0 PASS DP=68;GPV=1;SPV=3.4873e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:9,7:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1413 chr17 55277235 . A G 0 PASS DP=33;GPV=1;SPV=0.0012432;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,7:0,3:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1414 chr17 55336527 . T G 0 PASS DP=55;GPV=1;SPV=1.7815e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:10,10:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1415 chr17 55402087 . CA C 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1416 chr17 56303851 . A ATTTTT 0 PASS DP=39;GPV=1;SPV=0.045738;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:13,1:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1417 chr17 57030254 . A T 0 PASS DP=41;GPV=1;SPV=0.0041286;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:2,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1418 chr17 57860372 . ATTTT A 0 PASS DP=19;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:2,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1419 chr17 61311903 . CAT C 0 PASS DP=54;GPV=1;SPV=0.0017321;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:6,5:13,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1420 chr17 63086771 . T C 0 PASS DP=26;GPV=1;SPV=0.030435;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1421 chr17 63629362 . T C 0 PASS DP=60;GPV=1;SPV=0.00013375;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:10,7:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1422 chr17 65286372 . T TAC 0 PASS DP=51;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:8,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1423 chr17 65989245 . AAAAAAAG A 0 PASS DP=38;GPV=1;SPV=0.010569;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,12:6,6:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1424 chr17 67579625 . T TC 0 PASS DP=37;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:5,9:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1425 chr17 67952084 . C G 0 PASS DP=33;GPV=1;SPV=0.0017509;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:2,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1426 chr17 68163538 . C CA 0 PASS DP=36;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,4:3,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1427 chr17 68172141 . A AG 0 PASS DP=64;GPV=1;SPV=0.046007;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:10,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1428 chr17 70417232 . C CA 0 PASS DP=34;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:9,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1429 chr17 70494004 . T G 0 PASS DP=47;GPV=1;SPV=0.22036;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:17,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1430 chr17 70602851 . CA C 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1431 chr17 71032587 . G GT 0 PASS DP=24;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1432 chr17 71338895 . T TC 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1433 chr17 71608515 . A ATC 0 PASS DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1434 chr17 72117696 . C A 0 PASS DP=73;GPV=1;SPV=0.00020424;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:12,4:16,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1435 chr17 73569199 . C CT 0 PASS DP=30;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:6,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1436 chr17 74176320 . T TAAAAAA 0 PASS DP=37;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:6,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1437 chr17 74285976 . G T 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1438 chr17 74867306 . CAAAAAA C 0 PASS DP=26;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1439 chr17 75358914 . T TATATAA 0 PASS DP=35;GPV=1;SPV=0.035819;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1440 chr17 75938864 . C CA 0 PASS DP=39;GPV=1;SPV=0.036102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1441 chr17 76238085 . CA C 0 PASS DP=42;GPV=1;SPV=0.019243;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:12,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1442 chr17 76935870 . T C 0 PASS DP=40;GPV=1;SPV=0.033472;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:4,3:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1443 chr17 77145095 . A G 0 PASS DP=38;GPV=1;SPV=0.053755;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,6:6,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1444 chr17 77413954 . TTTTC T 0 PASS DP=55;GPV=1;SPV=0.051458;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1445 chr17 77718749 . G GTGTGTGTCTGTGTGTGCACATGCA 0 PASS DP=51;GPV=1;SPV=0.095044;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:12,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1446 chr17 77876975 . C CA 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1447 chr17 80024355 . A ACAC 0 PASS DP=56;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:1,2:25,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1448 chr17 80024394 . GAC G 0 PASS DP=55;GPV=1;SPV=0.04522;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:5,3:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1449 chr17 81661858 . C CA 0 PASS DP=32;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:7,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1450 chr18 77738 . C T 0 PASS DP=56;GPV=1;SPV=0.055746;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1451 chr18 105445 . G A 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1452 chr18 1629634 . ATATGTGAATG A 0 PASS DP=45;GPV=1;SPV=0.042059;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1453 chr18 1632822 . T C 0 PASS DP=36;GPV=1;SPV=0.015123;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:9,8:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1454 chr18 1748634 . ATT A 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1455 chr18 2826171 . T G 0 PASS DP=44;GPV=1;SPV=0.01057;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:8,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1456 chr18 3378878 . C CAA 0 PASS DP=25;GPV=1;SPV=0.0045767;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:3,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1457 chr18 3382688 . G GA 0 PASS DP=29;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:5,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1458 chr18 3782035 . G C 0 PASS DP=44;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1459 chr18 3827062 . G C 0 PASS DP=60;GPV=1;SPV=0.00026567;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1460 chr18 3992328 . T C 0 PASS DP=55;GPV=1;SPV=0.0025527;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:9,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1461 chr18 4080891 . T C 0 PASS DP=45;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,4:4,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1462 chr18 7842889 . A G 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1463 chr18 10208596 . G T 0 PASS DP=62;GPV=1;SPV=0.0013375;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1464 chr18 11133872 . C A 0 PASS DP=60;GPV=1;SPV=0.0017532;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1465 chr18 12521336 . CT C 0 PASS DP=43;GPV=1;SPV=0.036744;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:15,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1466 chr18 12792282 . C CTT 0 PASS DP=28;GPV=1;SPV=0.011071;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1467 chr18 13275039 . C CA 0 PASS DP=45;GPV=1;SPV=0.00048831;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,16:6,11:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1468 chr18 13443709 . T TCTCCTCCTCCTCCTC 0 PASS DP=35;GPV=1;SPV=0.0062699;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,13:7,7:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1469 chr18 14467281 . C CTT 0 PASS DP=39;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,9:3,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1470 chr18 14716165 . A G 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1471 chr18 15197059 . C T 0 PASS DP=55;GPV=1;SPV=0.00028843;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,2:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1472 chr18 15410300 . C A 0 PASS DP=176;GPV=1;SPV=0.022939;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:73,18:32,8:41,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1473 chr18 15467183 . A C 0 PASS DP=73;GPV=1;SPV=0.033038;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:27,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1474 chr18 15552815 . G T 0 PASS DP=165;GPV=1;SPV=0.045507;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:57,13:45,7:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1475 chr18 15603964 . G T 0 PASS DP=67;GPV=1;SPV=0.060505;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:12,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1476 chr18 15622831 . G C 0 PASS DP=44;GPV=1;SPV=0.053885;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:4,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1477 chr18 15651172 . G A 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:0,0:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1478 chr18 15699753 . C T 0 PASS DP=37;GPV=1;SPV=0.0079853;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:3,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1479 chr18 16959351 . G A 0 PASS DP=30;GPV=1;SPV=0.021073;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:9,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1480 chr18 17368130 . T G 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1481 chr18 17377058 . T G 0 PASS DP=62;GPV=1;SPV=0.0029264;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:13,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1482 chr18 17837660 . G C 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1483 chr18 18293571 . C T 0 PASS DP=122;GPV=1;SPV=0.029181;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:58,14:17,6:41,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1484 chr18 18629431 . G T 0 PASS DP=51;GPV=1;SPV=0.05062;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:18,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1485 chr18 19039313 . C A 0 PASS DP=38;GPV=1;SPV=0.041455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,0:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1486 chr18 19502295 . T G 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1487 chr18 20557981 . G C 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,0:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1488 chr18 20815525 . C A 0 PASS DP=75;GPV=1;SPV=0.0011434;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:12,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1489 chr18 20838526 . TC T 0 PASS DP=39;GPV=1;SPV=0.0048875;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:3,4:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1490 chr18 20838540 . T C 0 PASS DP=39;GPV=1;SPV=0.017609;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1491 chr18 20956155 . A C 0 PASS DP=59;GPV=1;SPV=0.038561;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:12,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1492 chr18 22232505 . C T 0 PASS DP=70;GPV=1;SPV=0.0016259;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:13,1:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1493 chr18 22232528 . A C 0 PASS DP=49;GPV=1;SPV=0.010404;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,1:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1494 chr18 23414331 . A C 0 PASS DP=52;GPV=1;SPV=0.020274;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,9:13,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1495 chr18 24729487 . CT C 0 PASS DP=17;GPV=1;SPV=0.004662;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,7:0,4:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1496 chr18 27137977 . C T 0 PASS DP=47;GPV=1;SPV=0.0038981;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1497 chr18 27567221 . T TAA 0 PASS DP=31;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:3,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1498 chr18 28518417 . C T 0 PASS DP=46;GPV=1;SPV=0.01229;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:6,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1499 chr18 30059360 . T C 0 PASS DP=68;GPV=1;SPV=2.9583e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,7:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1500 chr18 30706535 . G A 0 PASS DP=57;GPV=1;SPV=4.3012e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:12,6:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1501 chr18 31001091 . A G 0 PASS DP=56;GPV=1;SPV=0.0091169;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:10,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1502 chr18 32086355 . G GT 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:6,4:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1503 chr18 32567283 . CA C 0 PASS DP=55;GPV=1;SPV=0.02299;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,6:17,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1504 chr18 33093675 . AT A 0 PASS DP=56;GPV=1;SPV=0.0028364;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:12,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1505 chr18 33109832 . C A 0 PASS DP=52;GPV=1;SPV=5.4595e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:7,8:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1506 chr18 33768234 . C T 0 PASS DP=48;GPV=1;SPV=0.0086905;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:11,5:7,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1507 chr18 34440623 . AG A 0 PASS DP=57;GPV=1;SPV=0.0015629;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:10,2:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1508 chr18 34691046 . T A 0 PASS DP=60;GPV=1;SPV=0.0018974;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:14,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1509 chr18 35885155 . CA C 0 PASS DP=33;GPV=1;SPV=0.0045189;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1510 chr18 36206244 . C CT 0 PASS DP=18;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:1,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1511 chr18 36463387 . AAAAT A 0 PASS DP=97;GPV=1;SPV=0.063808;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:42,5:17,3:25,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1512 chr18 36720277 . G A 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:4,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1513 chr18 36869541 . A T 0 PASS DP=52;GPV=1;SPV=0.00090261;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:6,3:14,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1514 chr18 36984904 . CAA C 0 PASS DP=40;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,7:3,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1515 chr18 37462794 . T G 0 PASS DP=49;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:8,4:3,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1516 chr18 37857488 . CTTTCTTT C 0 PASS DP=43;GPV=1;SPV=0.030957;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1517 chr18 40601560 . C CTT 0 PASS DP=52;GPV=1;SPV=0.046888;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:2,2:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1518 chr18 42825432 . A G 0 PASS DP=56;GPV=1;SPV=0.00014918;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:10,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1519 chr18 43425274 . C T 0 PASS DP=65;GPV=1;SPV=3.4904e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:6,5:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1520 chr18 45209180 . C CAA 0 PASS DP=37;GPV=1;SPV=0.0047407;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:8,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1521 chr18 50852319 . GTTTTTTT G 0 PASS DP=51;GPV=1;SPV=0.028977;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:3,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1522 chr18 50913860 . T TATACACACACACACAC 0 PASS DP=32;GPV=1;SPV=0.013177;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1523 chr18 51131287 . TAC T 0 PASS DP=50;GPV=1;SPV=0.026055;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:5,5:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1524 chr18 51384788 . TATATATATATA T 0 PASS DP=17;GPV=1;SPV=0.17857;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,3:0,0:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1525 chr18 51844934 . GT G 0 PASS DP=46;GPV=1;SPV=0.031008;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1526 chr18 53407528 . G GATATATAT 0 PASS DP=29;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1527 chr18 53499957 . G T 0 PASS DP=54;GPV=1;SPV=0.0038679;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,3:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1528 chr18 57390047 . T A 0 PASS DP=57;GPV=1;SPV=0.0035421;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1529 chr18 57527638 . A G 0 PASS DP=55;GPV=1;SPV=0.11998;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:21,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1530 chr18 58646138 . AG A 0 PASS DP=49;GPV=1;SPV=0.089104;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:13,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1531 chr18 58920735 . CGTGTGTGTGT C 0 PASS DP=38;GPV=1;SPV=0.010876;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:10,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1532 chr18 59237459 . C CA 0 PASS DP=19;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1533 chr18 59522993 . C CAAA 0 PASS DP=25;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:2,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1534 chr18 62850074 . T A 0 PASS DP=26;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:2,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1535 chr18 63878575 . G GAA 0 PASS DP=45;GPV=1;SPV=0.0083111;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,8:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1536 chr18 64062944 . C CTA 0 PASS DP=36;GPV=1;SPV=0.016993;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1537 chr18 64062989 . T C 0 PASS DP=30;GPV=1;SPV=0.017591;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1538 chr18 65420400 . T A 0 PASS DP=61;GPV=1;SPV=0.0026788;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1539 chr18 66760271 . A G 0 PASS DP=63;GPV=1;SPV=3.5142e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:11,9:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1540 chr18 67402010 . A AG 0 PASS DP=24;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:5,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1541 chr18 68026237 . T TA 0 PASS DP=45;GPV=1;SPV=0.034789;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1542 chr18 68504776 . G GAGGAAGGAAGGA 0 PASS DP=30;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:4,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1543 chr18 69214371 . CTT C 0 PASS DP=19;GPV=1;SPV=0.016783;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,6:1,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1544 chr18 71156912 . G C 0 PASS DP=39;GPV=1;SPV=0.02564;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,1:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1545 chr18 71205760 . C CTCCA 0 PASS DP=38;GPV=1;SPV=0.028921;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:3,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1546 chr18 71210783 . C CT 0 PASS DP=26;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:3,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1547 chr18 71420401 . G GTATATATATATATATA 0 PASS DP=35;GPV=1;SPV=0.020174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:11,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1548 chr18 72625698 . C CTA 0 PASS DP=34;GPV=1;SPV=0.00030146;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:3,4:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1549 chr18 73094559 . AAAC A 0 PASS DP=50;GPV=1;SPV=0.038102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1550 chr18 73983993 . C CA 0 PASS DP=43;GPV=1;SPV=0.033472;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:11,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1551 chr18 74174891 . C G 0 PASS DP=55;GPV=1;SPV=0.00070165;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,9:7,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1552 chr18 76126690 . T C 0 PASS DP=55;GPV=1;SPV=1.7815e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:6,8:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1553 chr18 77796251 . CT C 0 PASS DP=52;GPV=1;SPV=0.010905;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,7:7,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1554 chr18 78012529 . C T 0 PASS DP=56;GPV=1;SPV=0.00023235;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:9,6:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1555 chr18 78109088 . TTTCTTTCTTTCTTTC T 0 PASS DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1556 chr18 79017137 . C A 0 PASS DP=37;GPV=1;SPV=0.015156;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1557 chr18 79505741 . T C 0 PASS DP=34;GPV=1;SPV=0.33824;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:15,1:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1558 chr18 79732475 . T C 0 PASS DP=29;GPV=1;SPV=0.022281;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1559 chr19 103817 . TAC T 0 PASS DP=88;GPV=1;SPV=0.0030733;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:20,11:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1560 chr19 319605 . C T 0 PASS DP=34;GPV=1;SPV=0.10008;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:11,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1561 chr19 785067 . A G 0 PASS DP=41;GPV=1;SPV=0.0053746;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:4,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1562 chr19 2155498 . C T 0 PASS DP=34;GPV=1;SPV=0.0021594;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:6,8:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1563 chr19 2990703 . A ACAT 0 PASS DP=57;GPV=1;SPV=0.0023444;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,10:7,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1564 chr19 3313188 . T TGTTGGAGACCATGAAGGGAGGCC 0 PASS DP=47;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1565 chr19 3789721 . CT C 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1566 chr19 5433796 . C CAA 0 PASS DP=22;GPV=1;SPV=0.062937;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:1,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1567 chr19 5465489 . C G 0 PASS DP=63;GPV=1;SPV=1.9702e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:14,8:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1568 chr19 7355068 . TCACACACACACACACACACA T 0 PASS DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,3:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1569 chr19 7692107 . T C 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1570 chr19 8771295 . G T 0 PASS DP=239;GPV=1;SPV=0.046443;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:103,23:76,19:27,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1571 chr19 8775174 . G T 0 PASS DP=58;GPV=1;SPV=0.036961;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:0,2:23,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1572 chr19 8987807 . ATTGTT A 0 PASS DP=37;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:3,6:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1573 chr19 9820707 . G A 0 PASS DP=24;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,3:0,0:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1574 chr19 9908464 . ATTTTT A 0 PASS DP=19;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,6:0,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1575 chr19 10301799 . T G 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1576 chr19 10724339 . G A 0 PASS DP=59;GPV=1;SPV=1.2849e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,13:8,6:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1577 chr19 12308695 . T A 0 PASS DP=22;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,5:0,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1578 chr19 13572639 . C T 0 PASS DP=51;GPV=1;SPV=0.0015405;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1579 chr19 13903673 . C CA 0 PASS DP=60;GPV=1;SPV=0.038355;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:16,8:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1580 chr19 14318078 . ATATATATAT A 0 PASS DP=22;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1581 chr19 15650803 . C T 0 PASS DP=29;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:5,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1582 chr19 16790642 . T A 0 PASS DP=44;GPV=1;SPV=0.045025;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1583 chr19 17681069 . C CTT 0 PASS DP=20;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:0,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1584 chr19 18159144 . C CTTTTTTTTTTT 0 PASS DP=19;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:2,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1585 chr19 18345725 . C CA 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:8,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1586 chr19 18621422 . T C 0 PASS DP=42;GPV=1;SPV=0.2164;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,4:6,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1587 chr19 18983363 . CA C 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1588 chr19 19318113 . C T 0 PASS DP=20;GPV=1;SPV=0.042892;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,3:1,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1589 chr19 19440986 . TTTCCTTCCC T 0 PASS DP=32;GPV=1;SPV=0.0074534;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:3,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1590 chr19 19691395 . C G 0 PASS DP=29;GPV=1;SPV=0.0014993;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:2,2:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1591 chr19 19984567 . C CA 0 PASS DP=18;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1592 chr19 20770110 . AG A 0 PASS DP=73;GPV=1;SPV=0.028958;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:10,1:22,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1593 chr19 20770112 . C A 0 PASS DP=71;GPV=1;SPV=0.036531;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:11,1:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1594 chr19 21565265 . C CT 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1595 chr19 22489382 . A G 0 PASS DP=70;GPV=1;SPV=3.9123e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:13,9:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1596 chr19 22885732 . C T 0 PASS DP=72;GPV=1;SPV=2.1758e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:16,7:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1597 chr19 23478513 . A T 0 PASS DP=59;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,2:0,0:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1598 chr19 24355432 . G GAAAT 0 PASS DP=117;GPV=1;SPV=0.044976;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:50,15:26,2:24,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1599 chr19 24372163 . C T 0 PASS DP=114;GPV=1;SPV=0.00041668;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:40,21:23,10:17,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1600 chr19 24395330 . C T 0 PASS DP=119;GPV=1;SPV=2.0682e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:50,17:20,6:30,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1601 chr19 24441180 . C A 0 PASS DP=102;GPV=1;SPV=0.038827;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:31,9:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1602 chr19 25425602 . T G 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1603 chr19 25963563 . G A 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1604 chr19 26161162 . T G 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1605 chr19 28819965 . G A 0 PASS DP=59;GPV=1;SPV=0.016072;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1606 chr19 29901079 . C T 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1607 chr19 30333181 . A G 0 PASS DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:11,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1608 chr19 30881294 . G A 0 PASS DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1609 chr19 32421647 . G A 0 PASS DP=43;GPV=1;SPV=0.028284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,7:3,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1610 chr19 35624102 . G GTT 0 PASS DP=26;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1611 chr19 36771535 . A G 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:2,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1612 chr19 36956601 . C T 0 PASS DP=52;GPV=1;SPV=0.01246;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,7:5,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1613 chr19 37229616 . G A 0 PASS DP=42;GPV=1;SPV=0.13415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:6,1:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1614 chr19 37355397 . T G 0 PASS DP=49;GPV=1;SPV=0.0001676;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1615 chr19 37375315 . C T 0 PASS DP=39;GPV=1;SPV=0.037328;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:4,1:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1616 chr19 37537911 . AT A 0 PASS DP=28;GPV=1;SPV=0.024176;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:1,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1617 chr19 39633991 . T TC 0 PASS DP=41;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1618 chr19 41645411 . A G 0 PASS DP=33;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,0:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1619 chr19 43303650 . ATGTGTGTGTGTGTGTG A 0 PASS DP=31;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:4,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1620 chr19 44167314 . C CT 0 PASS DP=28;GPV=1;SPV=0.0022121;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:4,6:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1621 chr19 44532565 . AAAAGAAAG A 0 PASS DP=39;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,7:3,2:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1622 chr19 44587574 . G A 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1623 chr19 45626380 . CT C 0 PASS DP=22;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:3,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1624 chr19 46200507 . TTC T 0 PASS DP=40;GPV=1;SPV=0.072765;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1625 chr19 46399136 . TG T 0 PASS DP=51;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1626 chr19 46793102 . T TAA 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1627 chr19 46941876 . T TAA 0 PASS DP=29;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1628 chr19 47420910 . T TCTCACA 0 PASS DP=37;GPV=1;SPV=0.015156;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1629 chr19 47908463 . T A 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1630 chr19 47915101 . G A 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1631 chr19 47920306 . A C 0 PASS DP=327;GPV=1;SPV=0.024939;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:137,20:71,14:66,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1632 chr19 47939926 . T A 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1633 chr19 48016456 . TTTTCTTTCCTTC T 0 PASS DP=34;GPV=1;SPV=0.020174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:2,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1634 chr19 48559006 . C T 0 PASS DP=48;GPV=1;SPV=0.014432;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:7,3:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1635 chr19 48655202 . G T 0 PASS DP=24;GPV=1;SPV=0.095238;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:3,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1636 chr19 49321321 . A T 0 PASS DP=45;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1637 chr19 51362170 . C T 0 PASS DP=55;GPV=1;SPV=0.10365;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,5:16,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1638 chr19 51608754 . A G 0 PASS DP=41;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,4:3,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1639 chr19 51995567 . T C 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1640 chr19 52865470 . T A 0 PASS DP=43;GPV=1;SPV=0.11077;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,2:6,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1641 chr19 52865924 . TATG T 0 PASS DP=33;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1642 chr19 52865936 . C T 0 PASS DP=39;GPV=1;SPV=0.03094;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1643 chr19 53007064 . C CA 0 PASS DP=40;GPV=1;SPV=0.037328;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:9,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1644 chr19 53125130 . G A 0 PASS DP=61;GPV=1;SPV=1.7463e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,9:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1645 chr19 53127875 . C CAAA 0 PASS DP=42;GPV=1;SPV=0.036101;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,5:4,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1646 chr19 53309270 . T C 0 PASS DP=42;GPV=1;SPV=0.016233;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1647 chr19 53820691 . A AT 0 PASS DP=39;GPV=1;SPV=0.0016476;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,13:3,9:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1648 chr19 54221926 . G T 0 PASS DP=69;GPV=1;SPV=0.048616;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,3:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1649 chr19 54286038 . C T 0 PASS DP=61;GPV=1;SPV=0.031211;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:10,1:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1650 chr19 54353176 . AG A 0 PASS DP=43;GPV=1;SPV=0.022451;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:6,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1651 chr19 54779651 . G A 0 PASS DP=35;GPV=1;SPV=0.0076246;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1652 chr19 55335498 . A T 0 PASS DP=43;GPV=1;SPV=0.0050719;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1653 chr19 55734371 . A C 0 PASS DP=31;GPV=1;SPV=0.54545;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,2:2,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1654 chr19 56745414 . G A 0 PASS DP=84;GPV=1;SPV=0.025744;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:13,2:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1655 chr2 736402 . T C 0 PASS DP=51;GPV=1;SPV=0.072331;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1656 chr2 802134 . C G 0 PASS DP=31;GPV=1;SPV=0.0067841;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:3,4:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1657 chr2 869219 . C G 0 PASS DP=30;GPV=1;SPV=0.043423;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:9,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1658 chr2 1235444 . GC G 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1659 chr2 1262695 . G C 0 PASS DP=36;GPV=1;SPV=0.0092864;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1660 chr2 1342708 . C G 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1661 chr2 1861649 . T C 0 PASS DP=34;GPV=1;SPV=0.047101;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:2,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1662 chr2 3199807 . G GGA 0 PASS DP=37;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:5,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1663 chr2 6151090 . C CTT 0 PASS DP=39;GPV=1;SPV=0.011088;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1664 chr2 6169093 . TTTTC T 0 PASS DP=23;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:2,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1665 chr2 6677975 . A G 0 PASS DP=36;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1666 chr2 6677977 . A G 0 PASS DP=35;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1667 chr2 6896532 . C CTT 0 PASS DP=29;GPV=1;SPV=0.0028986;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,8:3,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1668 chr2 7480506 . A C 0 PASS DP=55;GPV=1;SPV=0.00099636;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:16,19:10,7:6,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1669 chr2 8995590 . A AT 0 PASS DP=54;GPV=1;SPV=0.00088132;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,8:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1670 chr2 10554207 . C G 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1671 chr2 12825828 . TA T 0 PASS DP=43;GPV=1;SPV=0.0023186;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:7,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1672 chr2 12878380 . GTATATATATATGTGTATATATATATATATA G 0 PASS DP=45;GPV=1;SPV=0.027296;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1673 chr2 14735748 . AAAAG A 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1674 chr2 16006439 . G T 0 PASS DP=62;GPV=1;SPV=2.2354e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1675 chr2 17447149 . G T 0 PASS DP=50;GPV=1;SPV=0.003465;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1676 chr2 17503990 . CA C 0 PASS DP=36;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:6,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1677 chr2 21572766 . TA T 0 PASS DP=37;GPV=1;SPV=0.021701;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1678 chr2 22395978 . C G 0 PASS DP=65;GPV=1;SPV=0.0044459;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:16,7:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1679 chr2 23910651 . T TGAGGTCA 0 PASS DP=40;GPV=1;SPV=0.0089978;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:12,9:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1680 chr2 24109152 . C CA 0 PASS DP=33;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,7:10,5:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1681 chr2 24116876 . C CA 0 PASS DP=50;GPV=1;SPV=0.050152;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:10,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1682 chr2 24773141 . A C 0 PASS DP=36;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1683 chr2 27642960 . C T 0 PASS DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1684 chr2 31618478 . G A 0 PASS DP=41;GPV=1;SPV=0.0033467;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1685 chr2 31737876 . G GACAC 0 PASS DP=43;GPV=1;SPV=0.051948;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:9,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1686 chr2 32461047 . C G 0 PASS DP=21;GPV=1;SPV=0.038921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1687 chr2 33341729 . A AAAATATATATAT 0 PASS DP=42;GPV=1;SPV=0.031374;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:6,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1688 chr2 34243744 . CA C 0 PASS DP=30;GPV=1;SPV=0.0065359;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,10:2,9:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1689 chr2 34787738 . CT C 0 PASS DP=27;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1690 chr2 35521833 . C T 0 PASS DP=44;GPV=1;SPV=0.0056979;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1691 chr2 35701204 . TAA T 0 PASS DP=67;GPV=1;SPV=0.053387;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1692 chr2 35974670 . T C 0 PASS DP=32;GPV=1;SPV=0.10733;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:9,2:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1693 chr2 38482904 . T A 0 PASS DP=58;GPV=1;SPV=0.021449;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,1:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1694 chr2 38482905 . A T 0 PASS DP=63;GPV=1;SPV=0.039873;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1695 chr2 39207517 . G A 0 PASS DP=67;GPV=1;SPV=3.6127e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:9,14:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1696 chr2 39619216 . A AT 0 PASS DP=37;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1697 chr2 40972280 . T TAAA 0 PASS DP=31;GPV=1;SPV=0.0088578;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,6:1,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1698 chr2 41324684 . T TTCTCTCTCTCTCTC 0 PASS DP=29;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:3,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1699 chr2 42347307 . C CT 0 PASS DP=34;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:5,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1700 chr2 43636340 . A AGAT 0 PASS DP=43;GPV=1;SPV=0.040214;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:4,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1701 chr2 44346784 . G A 0 PASS DP=60;GPV=1;SPV=3.3707e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:7,10:13,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1702 chr2 44400928 . GTGTA G 0 PASS DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1703 chr2 46769584 . G GA 0 PASS DP=42;GPV=1;SPV=0.0041286;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1704 chr2 47009888 . T G 0 PASS DP=35;GPV=1;SPV=0.11053;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1705 chr2 47344111 . TAA T 0 PASS DP=41;GPV=1;SPV=0.0069071;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:6,3:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1706 chr2 47950544 . G A 0 PASS DP=24;GPV=1;SPV=0.0034325;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,1:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1707 chr2 48288282 . A AGAGT 0 PASS DP=43;GPV=1;SPV=0.0058369;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1708 chr2 48288283 . CTTTTAT C 0 PASS DP=47;GPV=1;SPV=0.0066039;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,7:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1709 chr2 50951963 . A ATATTT 0 PASS DP=35;GPV=1;SPV=0.081016;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,7:10,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1710 chr2 51413347 . A G 0 PASS DP=50;GPV=1;SPV=0.002854;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:8,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1711 chr2 51834653 . ATCTATATATCTATATATATATATATCTCTCTCTCTCTCTCTCTC A 0 PASS DP=39;GPV=1;SPV=0.022366;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1712 chr2 52111307 . C CA 0 PASS DP=40;GPV=1;SPV=0.028335;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:5,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1713 chr2 52305046 . T C 0 PASS DP=64;GPV=1;SPV=1.9001e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:5,7:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1714 chr2 55726018 . G A 0 PASS DP=64;GPV=1;SPV=1.884e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:7,4:9,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1715 chr2 56693547 . T TATATATATATATATATACAC 0 PASS DP=39;GPV=1;SPV=0.011671;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1716 chr2 56889637 . C T 0 PASS DP=53;GPV=1;SPV=0.0099416;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,5:6,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1717 chr2 57595116 . T TGC 0 PASS DP=43;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:6,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1718 chr2 60251438 . T TTAGA 0 PASS DP=68;GPV=1;SPV=0.0061654;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,6:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1719 chr2 60560194 . T G 0 PASS DP=59;GPV=1;SPV=3.3518e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:5,6:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1720 chr2 60625053 . C G 0 PASS DP=57;GPV=1;SPV=0.013909;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1721 chr2 61596396 . A T 0 PASS DP=39;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1722 chr2 65125864 . CT C 0 PASS DP=20;GPV=1;SPV=0.031857;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:0,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1723 chr2 65234600 . T C 0 PASS DP=45;GPV=1;SPV=0.0047587;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:6,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1724 chr2 65444840 . TTTTCTTTCTTTC T 0 PASS DP=45;GPV=1;SPV=0.016237;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:4,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1725 chr2 65647998 . AT A 0 PASS DP=46;GPV=1;SPV=0.0033311;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:5,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1726 chr2 66130391 . T G 0 PASS DP=36;GPV=1;SPV=0.023537;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,5:4,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1727 chr2 71245513 . CT C 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1728 chr2 71635766 . G A 0 PASS DP=26;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1729 chr2 71635770 . G A 0 PASS DP=30;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1730 chr2 74182834 . C A 0 PASS DP=52;GPV=1;SPV=0.0015405;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:6,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1731 chr2 74473763 . AT A 0 PASS DP=33;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1732 chr2 77603466 . G A 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1733 chr2 78518329 . CT C 0 PASS DP=74;GPV=1;SPV=0.012115;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:22,3:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1734 chr2 78543274 . G GTT 0 PASS DP=50;GPV=1;SPV=0.0001029;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:6,13:5,10:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1735 chr2 79046766 . C A 0 PASS DP=60;GPV=1;SPV=0.00024707;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,3:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1736 chr2 80881318 . C T 0 PASS DP=49;GPV=1;SPV=8.5672e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:3,4:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1737 chr2 81963292 . G A 0 PASS DP=41;GPV=1;SPV=0.032072;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:11,13:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1738 chr2 82186972 . GTA G 0 PASS DP=59;GPV=1;SPV=0.032848;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1739 chr2 82477666 . A T 0 PASS DP=54;GPV=1;SPV=0.00064337;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:10,8:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1740 chr2 83212156 . A AT 0 PASS DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1741 chr2 84141454 . C T 0 PASS DP=50;GPV=1;SPV=0.0084701;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,3:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1742 chr2 84480962 . C CA 0 PASS DP=38;GPV=1;SPV=0.024656;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1743 chr2 85194385 . C T 0 PASS DP=56;GPV=1;SPV=4.8428e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:8,4:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1744 chr2 86226632 . C CTTTTT 0 PASS DP=38;GPV=1;SPV=0.077195;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1745 chr2 86716902 . A AAAAAAAAAACAAAC 0 PASS DP=28;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1746 chr2 87080887 . GAACT G 0 PASS DP=70;GPV=1;SPV=0.072031;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:16,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1747 chr2 87140408 . T C 0 PASS DP=68;GPV=1;SPV=0.013126;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:7,5:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1748 chr2 87175658 . A G 0 PASS DP=26;GPV=1;SPV=0.11077;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1749 chr2 87348767 . T C 0 PASS DP=56;GPV=1;SPV=0.034192;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1750 chr2 87361291 . G A 0 PASS DP=100;GPV=1;SPV=0.016609;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:19,5:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1751 chr2 87364750 . TGATGA T 0 PASS DP=106;GPV=1;SPV=0.023935;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:48,8:28,2:20,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1752 chr2 87368746 . TA T 0 PASS DP=63;GPV=1;SPV=0.071412;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:14,1:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1753 chr2 87417936 . CA C 0 PASS DP=19;GPV=1;SPV=0.13725;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1754 chr2 87425940 . CAAGCCAGCCACCCAGCA C 0 PASS DP=35;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:9,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1755 chr2 87472920 . A G 0 PASS DP=23;GPV=1;SPV=0.002173;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:2,5:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1756 chr2 87597072 . A G 0 PASS DP=33;GPV=1;SPV=0.02064;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,3:3,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1757 chr2 87656421 . A G 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1758 chr2 87721053 . T G 0 PASS DP=32;GPV=1;SPV=0.0055231;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1759 chr2 87879624 . A C 0 PASS DP=27;GPV=1;SPV=0.031121;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:0,2:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1760 chr2 89315609 . T C 0 PASS DP=41;GPV=1;SPV=0.010747;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1761 chr2 89538074 . T C 0 PASS DP=122;GPV=1;SPV=0.030096;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:59,19:24,10:35,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1762 chr2 89552645 . C A 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1763 chr2 89559108 . C T 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1764 chr2 89593824 . A T 0 PASS DP=113;GPV=1;SPV=0.048552;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:25,6:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1765 chr2 90022764 . C T 0 PASS DP=63;GPV=1;SPV=0.016895;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1766 chr2 90058484 . C T 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1767 chr2 90133849 . G A 0 PASS DP=33;GPV=1;SPV=0.013278;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:7,8:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1768 chr2 90254023 . G C 0 PASS DP=84;GPV=1;SPV=0.04931;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:1,1:30,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1769 chr2 90287226 . C T 0 PASS DP=72;GPV=1;SPV=0.042693;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:21,6:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1770 chr2 90371425 . A G 0 PASS DP=88;GPV=1;SPV=0.037418;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,10:7,4:26,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1771 chr2 90371859 . G A 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:13,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1772 chr2 91427568 . C G 0 PASS DP=162;GPV=1;SPV=0.0079957;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:71,9:37,1:34,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1773 chr2 91432684 . G C 0 PASS DP=236;GPV=1;SPV=0.033118;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:115,14:58,5:57,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1774 chr2 91451180 . T C 0 PASS DP=197;GPV=1;SPV=0.018932;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:93,18:46,10:47,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1775 chr2 91472185 . C T 0 PASS DP=102;GPV=1;SPV=0.035165;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,10:24,7:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1776 chr2 91473716 . G C 0 PASS DP=271;GPV=1;SPV=0.017556;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:113,22:55,17:58,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1777 chr2 91499851 . TTGGCTGGC T 0 PASS DP=43;GPV=1;SPV=0.01539;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1778 chr2 91649254 . A T 0 PASS DP=70;GPV=1;SPV=0.026147;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:6,1:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1779 chr2 91669627 . T C 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:2,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1780 chr2 91727840 . C T 0 PASS DP=31;GPV=1;SPV=0.031813;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1781 chr2 91892509 . C T 0 PASS DP=164;GPV=1;SPV=0.026338;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:68,10:21,3:47,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1782 chr2 92057127 . T C 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1783 chr2 92057166 . T A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1784 chr2 92197366 . G T 0 PASS DP=449;GPV=1;SPV=0.002724;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:198,29:117,17:81,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1785 chr2 92358452 . T A 0 PASS DP=69;GPV=1;SPV=0.012894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,1:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1786 chr2 92376082 . C T 0 PASS DP=48;GPV=1;SPV=0.018165;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:2,1:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1787 chr2 92380957 . T A 0 PASS DP=151;GPV=1;SPV=0.027334;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:60,13:5,1:55,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1788 chr2 92416953 . G C 0 PASS DP=48;GPV=1;SPV=0.049645;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:12,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1789 chr2 92436292 . T G 0 PASS DP=99;GPV=1;SPV=0.022694;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:18,8:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1790 chr2 92595112 . G A 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1791 chr2 92667798 . T G 0 PASS DP=102;GPV=1;SPV=0.0087838;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:24,6:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1792 chr2 92687005 . C T 0 PASS DP=80;GPV=1;SPV=0.043165;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:13,5:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1793 chr2 92705371 . G A 0 PASS DP=51;GPV=1;SPV=0.021326;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,1:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1794 chr2 92795746 . C T 0 PASS DP=81;GPV=1;SPV=0.028929;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,9:23,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1795 chr2 93249851 . T G 0 PASS DP=89;GPV=1;SPV=0.033687;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:1,0:34,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1796 chr2 93253263 . G C 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:10,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1797 chr2 93263138 . G C 0 PASS DP=80;GPV=1;SPV=0.0084925;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:33,7:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1798 chr2 93455444 . T G 0 PASS DP=35;GPV=1;SPV=0.058442;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1799 chr2 93485871 . A G 0 PASS DP=32;GPV=1;SPV=0.030104;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1800 chr2 93580446 . G T 0 PASS DP=67;GPV=1;SPV=0.068312;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:28,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1801 chr2 93674089 . A G 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1802 chr2 93824475 . T G 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1803 chr2 93857398 . C A 0 PASS DP=220;GPV=1;SPV=0.02357;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:88,19:87,18:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1804 chr2 93879854 . T A 0 PASS DP=27;GPV=1;SPV=0.18803;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:10,2:2,1:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1805 chr2 93883067 . G C 0 PASS DP=65;GPV=1;SPV=0.036878;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,4:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1806 chr2 93946886 . T C 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1807 chr2 94219398 . C T 0 PASS DP=70;GPV=1;SPV=0.010246;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:16,7:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1808 chr2 94739855 . C T 0 PASS DP=64;GPV=1;SPV=0.026412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:15,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1809 chr2 95639887 . G T 0 PASS DP=33;GPV=1;SPV=0.081016;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:3,4:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1810 chr2 95885787 . C A 0 PASS DP=51;GPV=1;SPV=0.0074736;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1811 chr2 97166079 . A ATGG 0 PASS DP=54;GPV=1;SPV=0.031714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:5,1:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1812 chr2 97514685 . A C 0 PASS DP=39;GPV=1;SPV=0.035343;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:5,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1813 chr2 97667268 . A T 0 PASS DP=37;GPV=1;SPV=0.16725;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:7,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1814 chr2 98635988 . A AAAAAT 0 PASS DP=38;GPV=1;SPV=0.018694;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1815 chr2 102260258 . AG A 0 PASS DP=43;GPV=1;SPV=0.026903;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1816 chr2 102958716 . G GT 0 PASS DP=65;GPV=1;SPV=0.00021623;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:16,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1817 chr2 103359765 . C T 0 PASS DP=63;GPV=1;SPV=2.1901e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,8:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1818 chr2 104375468 . C CT 0 PASS DP=40;GPV=1;SPV=0.0084306;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:3,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1819 chr2 105996608 . G A 0 PASS DP=73;GPV=1;SPV=4.1294e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:12,8:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1820 chr2 107095278 . GA G 0 PASS DP=50;GPV=1;SPV=0.00019854;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:10,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1821 chr2 107904832 . G A 0 PASS DP=85;GPV=1;SPV=0.019667;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:9,7:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1822 chr2 108122467 . AAAAAAAAAATATATATATATAT A 0 PASS DP=25;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1823 chr2 108292393 . AACAC A 0 PASS DP=47;GPV=1;SPV=0.0026559;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:12,6:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1824 chr2 110049908 . C T 0 PASS DP=99;GPV=1;SPV=0.0075507;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:39,18:19,11:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1825 chr2 110226308 . C T 0 PASS DP=47;GPV=1;SPV=0.00024036;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,3:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1826 chr2 111506131 . C T 0 PASS DP=72;GPV=1;SPV=0.0081354;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:14,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1827 chr2 111593055 . G A 0 PASS DP=86;GPV=1;SPV=0.04437;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:18,3:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1828 chr2 112338859 . A G 0 PASS DP=18;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,4:1,1:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1829 chr2 112373873 . C T 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1830 chr2 113077537 . T C 0 PASS DP=34;GPV=1;SPV=0.037732;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:3,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1831 chr2 113589594 . G T 0 PASS DP=90;GPV=1;SPV=0.020182;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:18,2:19,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1832 chr2 114426588 . G A 0 PASS DP=59;GPV=1;SPV=0.00024866;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,1:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1833 chr2 114812583 . G GACAC 0 PASS DP=53;GPV=1;SPV=0.065377;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,5:12,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1834 chr2 116463887 . C G 0 PASS DP=57;GPV=1;SPV=0.0018182;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:7,2:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1835 chr2 117407919 . C T 0 PASS DP=20;GPV=1;SPV=0.12281;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:0,0:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1836 chr2 119114640 . G A 0 PASS DP=56;GPV=1;SPV=0.00051776;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,6:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1837 chr2 119922218 . TAA T 0 PASS DP=33;GPV=1;SPV=0.014934;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1838 chr2 120142114 . A T 0 PASS DP=35;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1839 chr2 120142116 . A T 0 PASS DP=33;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1840 chr2 121151724 . A C 0 PASS DP=49;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:2,2:0,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1841 chr2 121672921 . CA C 0 PASS DP=37;GPV=1;SPV=0.0015417;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1842 chr2 121891029 . C CAA 0 PASS DP=26;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1843 chr2 124655937 . G GAGAAAGAA 0 PASS DP=36;GPV=1;SPV=0.021691;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:7,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1844 chr2 125894961 . CAT C 0 PASS DP=21;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:1,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1845 chr2 129549054 . C T 0 PASS DP=74;GPV=1;SPV=3.9426e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:16,5:11,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1846 chr2 130074871 . C A 0 PASS DP=64;GPV=1;SPV=0.0017104;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:11,4:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1847 chr2 131534031 . C T 0 PASS DP=80;GPV=1;SPV=3.584e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:17,6:10,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1848 chr2 131709276 . T A 0 PASS DP=54;GPV=1;SPV=0.00057068;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:4,6:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1849 chr2 132362152 . CAT C 0 PASS DP=161;GPV=1;SPV=0.043085;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:57,11:32,6:25,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1850 chr2 132362164 . G GC 0 PASS DP=150;GPV=1;SPV=0.03724;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:30,6:26,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1851 chr2 133482871 . CTTTT C 0 PASS DP=63;GPV=1;SPV=8.4874e-06;SS=2;SSC=50;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:9,11:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1852 chr2 134145214 . C G 0 PASS DP=66;GPV=1;SPV=0.00135;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:13,8:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1853 chr2 134193675 . T TTGTG 0 PASS DP=28;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,6:2,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1854 chr2 134516780 . C CATATATATATGCATATATATGAATAT 0 PASS DP=31;GPV=1;SPV=0.14279;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:7,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1855 chr2 135699053 . TA T 0 PASS DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:16,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1856 chr2 139873820 . ATAT A 0 PASS DP=28;GPV=1;SPV=0.0071795;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1857 chr2 140228179 . AAT A 0 PASS DP=27;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,4:2,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1858 chr2 141088021 . T C 0 PASS DP=65;GPV=1;SPV=2.1154e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,9:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1859 chr2 142448453 . G A 0 PASS DP=36;GPV=1;SPV=0.016242;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1860 chr2 143680030 . A T 0 PASS DP=38;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1861 chr2 144484185 . T TTGTGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=28;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,8:3,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1862 chr2 145541243 . AT A 0 PASS DP=53;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,4:4,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1863 chr2 145893425 . C CA 0 PASS DP=23;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1864 chr2 146979198 . AT A 0 PASS DP=43;GPV=1;SPV=0.0078215;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,11:5,7:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1865 chr2 147397397 . AACATT A 0 PASS DP=62;GPV=1;SPV=0.025662;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:11,4:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1866 chr2 147398202 . CAAA C 0 PASS DP=49;GPV=1;SPV=0.0031585;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:9,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1867 chr2 149720221 . G T 0 PASS DP=64;GPV=1;SPV=0.0004122;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:9,6:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1868 chr2 150284846 . CTT C 0 PASS DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1869 chr2 151285589 . G GA 0 PASS DP=33;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:5,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1870 chr2 153390112 . C T 0 PASS DP=55;GPV=1;SPV=6.0912e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:9,7:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1871 chr2 154216802 . CT C 0 PASS DP=19;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1872 chr2 155721753 . CAAAAAAAA C 0 PASS DP=31;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:3,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1873 chr2 155815260 . G T 0 PASS DP=54;GPV=1;SPV=2.7022e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,5:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1874 chr2 156256911 . C T 0 PASS DP=73;GPV=1;SPV=0.023554;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1875 chr2 156256938 . T C 0 PASS DP=70;GPV=1;SPV=0.037167;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1876 chr2 158962657 . C T 0 PASS DP=48;GPV=1;SPV=0.0033296;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1877 chr2 159874193 . TATTGTAA T 0 PASS DP=50;GPV=1;SPV=0.038501;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1878 chr2 159874209 . A T 0 PASS DP=49;GPV=1;SPV=0.02545;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,7:5,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1879 chr2 160324880 . G GTATATA 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:10,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1880 chr2 162820209 . T TTGTGTGTGTGTG 0 PASS DP=23;GPV=1;SPV=0.022136;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,7:1,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1881 chr2 162908321 . C T 0 PASS DP=44;GPV=1;SPV=0.053885;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1882 chr2 163934847 . TA T 0 PASS DP=36;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,5:4,1:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1883 chr2 164142977 . A T 0 PASS DP=41;GPV=1;SPV=0.047842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1884 chr2 166100056 . G T 0 PASS DP=47;GPV=1;SPV=0.021726;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1885 chr2 166414462 . GATAT G 0 PASS DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1886 chr2 167590345 . CA C 0 PASS DP=42;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,11:4,7:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1887 chr2 168897560 . T C 0 PASS DP=36;GPV=1;SPV=0.28347;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:9,1:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1888 chr2 169327154 . C T 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1889 chr2 169466284 . T C 0 PASS DP=19;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1890 chr2 170149646 . T C 0 PASS DP=24;GPV=1;SPV=0.0015602;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1891 chr2 170681049 . CA C 0 PASS DP=39;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,13:5,5:2,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1892 chr2 171048626 . GAAACCC G 0 PASS DP=44;GPV=1;SPV=0.022974;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1893 chr2 171048633 . A C 0 PASS DP=40;GPV=1;SPV=0.016311;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1894 chr2 171496401 . A C 0 PASS DP=55;GPV=1;SPV=0.13598;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:19,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1895 chr2 172117902 . T TATATATATATATACAC 0 PASS DP=40;GPV=1;SPV=0.0056039;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,9:7,5:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1896 chr2 172203335 . C CAAA 0 PASS DP=18;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1897 chr2 175787160 . G T 0 PASS DP=50;GPV=1;SPV=0.0027568;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:7,4:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1898 chr2 176542107 . GA G 0 PASS DP=21;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1899 chr2 176656424 . T TTTCCTTCCTTCC 0 PASS DP=28;GPV=1;SPV=0.14559;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:11,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1900 chr2 177019690 . T TATATATATATATATACACAC 0 PASS DP=61;GPV=1;SPV=0.028555;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,7:12,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1901 chr2 179663713 . C CAA 0 PASS DP=31;GPV=1;SPV=0.021073;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1902 chr2 184229750 . C T 0 PASS DP=48;GPV=1;SPV=0.0060802;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1903 chr2 184448586 . C G 0 PASS DP=57;GPV=1;SPV=0.01309;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:12,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1904 chr2 186242677 . C CT 0 PASS DP=16;GPV=1;SPV=0.0050505;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,7:1,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1905 chr2 188800494 . CAAAAAAAAAAA C 0 PASS DP=31;GPV=1;SPV=0.020719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1906 chr2 189931387 . A T 0 PASS DP=55;GPV=1;SPV=4.6765e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,7:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1907 chr2 190270282 . A T 0 PASS DP=51;GPV=1;SPV=0.00042977;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,4:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1908 chr2 192947802 . G A 0 PASS DP=64;GPV=1;SPV=5.1236e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:14,6:9,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1909 chr2 194450607 . AAAAAAAAAAAAAAAAAATATATATATATATATATATAT A 0 PASS DP=23;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1910 chr2 196922577 . G GACAC 0 PASS DP=29;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:8,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1911 chr2 197103228 . A C 0 PASS DP=57;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1912 chr2 198158230 . A G 0 PASS DP=66;GPV=1;SPV=3.3187e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:6,7:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1913 chr2 201561893 . GA G 0 PASS DP=42;GPV=1;SPV=0.016233;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1914 chr2 203216011 . A T 0 PASS DP=50;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1915 chr2 207423566 . A T 0 PASS DP=48;GPV=1;SPV=0.03602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,6:7,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1916 chr2 207462764 . T TA 0 PASS DP=30;GPV=1;SPV=0.26692;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1917 chr2 207818542 . A G 0 PASS DP=38;GPV=1;SPV=0.037811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,6:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1918 chr2 208157628 . GTT G 0 PASS DP=50;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:2,3:0,0:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1919 chr2 208856067 . C CTGATGGTCCTTTAACTGCAGTGTACTT 0 PASS DP=36;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1920 chr2 209081372 . C A 0 PASS DP=26;GPV=1;SPV=0.21538;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:8,1:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1921 chr2 210330336 . G GT 0 PASS DP=31;GPV=1;SPV=0.0031353;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:3,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1922 chr2 212145727 . TAAAAAAAA T 0 PASS DP=23;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:4,1:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1923 chr2 212864383 . TTA T 0 PASS DP=65;GPV=1;SPV=0.083654;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:7,2:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1924 chr2 213030812 . C CT 0 PASS DP=43;GPV=1;SPV=0.012393;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,7:8,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1925 chr2 213322357 . C A 0 PASS DP=22;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:0,5:0,3:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1926 chr2 213608771 . C T 0 PASS DP=72;GPV=1;SPV=9.863e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:11,10:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1927 chr2 213800335 . T C 0 PASS DP=19;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:0,0:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1928 chr2 214037864 . G GGTGT 0 PASS DP=29;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:4,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1929 chr2 214977880 . C CT 0 PASS DP=47;GPV=1;SPV=0.0006592;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:5,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1930 chr2 215786411 . C T 0 PASS DP=56;GPV=1;SPV=1.7296e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,5:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1931 chr2 219933255 . T A 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,5:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1932 chr2 220257285 . A G 0 PASS DP=21;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1933 chr2 224305397 . CT C 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1934 chr2 224357093 . CAAA C 0 PASS DP=25;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1935 chr2 224458590 . GTT G 0 PASS DP=42;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,10:1,5:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1936 chr2 225204941 . C CTTTCTTTCT 0 PASS DP=43;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:7,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1937 chr2 225655885 . T TACACAC 0 PASS DP=21;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1938 chr2 225764030 . CT C 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1939 chr2 226318398 . CA C 0 PASS DP=30;GPV=1;SPV=0.0088417;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1940 chr2 226354884 . G GT 0 PASS DP=56;GPV=1;SPV=0.055746;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1941 chr2 227656624 . A G 0 PASS DP=65;GPV=1;SPV=0.025922;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1942 chr2 228501713 . G T 0 PASS DP=20;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,4:1,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1943 chr2 228808589 . C A 0 PASS DP=56;GPV=1;SPV=0.00014325;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1944 chr2 230119123 . A AT 0 PASS DP=38;GPV=1;SPV=0.18018;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,2:9,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1945 chr2 231725370 . T A 0 PASS DP=50;GPV=1;SPV=0.016206;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:1,3:0,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1946 chr2 231801630 . C CT 0 PASS DP=32;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:6,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1947 chr2 235278477 . C CTT 0 PASS DP=19;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:0,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1948 chr2 235831185 . A T 0 PASS DP=58;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,3:2,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1949 chr2 237307233 . C A 0 PASS DP=46;GPV=1;SPV=0.12281;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1950 chr2 238086708 . T TAAAAA 0 PASS DP=26;GPV=1;SPV=0.025058;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,5:0,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1951 chr2 238110553 . A T 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:6,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1952 chr2 240308866 . GTGTCTC G 0 PASS DP=66;GPV=1;SPV=0.077856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,4:12,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1953 chr2 240411015 . C T 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1954 chr2 240976465 . G A 0 PASS DP=57;GPV=1;SPV=0.034164;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,1:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1955 chr2 241338719 . ATATAT A 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,1:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1956 chr2 241648688 . G A 0 PASS DP=57;GPV=1;SPV=0.034034;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:13,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1957 chr2 241774683 . TC T 0 PASS DP=73;GPV=1;SPV=0.039485;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1958 chr2 241819955 . G A 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:2,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1959 chr2 242006800 . C T 0 PASS DP=42;GPV=1;SPV=0.046752;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:6,1:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1960 chr2 242183243 . C G 0 PASS DP=66;GPV=1;SPV=0.017865;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:13,2:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1961 chr20 149164 . G A 0 PASS DP=70;GPV=1;SPV=0.017268;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:15,1:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1962 chr20 3635363 . T TAATAAATAAATA 0 PASS DP=40;GPV=1;SPV=0.013238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1963 chr20 4231083 . T TC 0 PASS DP=39;GPV=1;SPV=0.09062;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:6,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1964 chr20 4747645 . C T 0 PASS DP=50;GPV=1;SPV=0.0070897;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,3:9,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1965 chr20 4985134 . TC T 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1966 chr20 5005000 . A AAAAT 0 PASS DP=53;GPV=1;SPV=0.006682;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:5,5:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1967 chr20 5250006 . AT A 0 PASS DP=47;GPV=1;SPV=0.0002157;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1968 chr20 6425084 . A AAAAAAGAG 0 PASS DP=47;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,8:7,1:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1969 chr20 6690801 . CAAAAA C 0 PASS DP=23;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1970 chr20 7535830 . G A 0 PASS DP=57;GPV=1;SPV=9.0835e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1971 chr20 7680055 . CT C 0 PASS DP=38;GPV=1;SPV=0.0011112;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1972 chr20 7815911 . G A 0 PASS DP=78;GPV=1;SPV=2.1927e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:12,6:11,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1973 chr20 8556656 . GGT G 0 PASS DP=40;GPV=1;SPV=0.0073495;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:4,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1974 chr20 8633101 . TACACACACAC T 0 PASS DP=60;GPV=1;SPV=0.00045491;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:14,7:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1975 chr20 8896268 . C CAAAA 0 PASS DP=35;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,7:8,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1976 chr20 9879554 . G A 0 PASS DP=36;GPV=1;SPV=0.0091533;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:5,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1977 chr20 10082287 . CA C 0 PASS DP=37;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:10,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1978 chr20 10891617 . CT C 0 PASS DP=24;GPV=1;SPV=0.29371;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1979 chr20 11374566 . TTA T 0 PASS DP=50;GPV=1;SPV=0.049139;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1980 chr20 11854879 . C CA 0 PASS DP=28;GPV=1;SPV=0.0018815;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:3,5:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1981 chr20 11859724 . C CATATATATATAT 0 PASS DP=44;GPV=1;SPV=0.046752;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:9,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1982 chr20 12342744 . GA G 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1983 chr20 12681880 . A T 0 PASS DP=61;GPV=1;SPV=0.03842;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1984 chr20 13612491 . A AACAC 0 PASS DP=44;GPV=1;SPV=0.0024835;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,5:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1985 chr20 14071695 . T C 0 PASS DP=67;GPV=1;SPV=4.2509e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:15,5:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1986 chr20 17479809 . A C 0 PASS DP=26;GPV=1;SPV=0.015103;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,12:2,4:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1987 chr20 17504905 . G GT 0 PASS DP=44;GPV=1;SPV=0.0028667;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1988 chr20 20000330 . G T 0 PASS DP=56;GPV=1;SPV=0.0028364;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:12,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1989 chr20 20000533 . AC A 0 PASS DP=69;GPV=1;SPV=0.0012459;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,3:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1990 chr20 21353266 . C A 0 PASS DP=21;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1991 chr20 22762349 . TAGAGAC T 0 PASS DP=34;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,5:1,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1992 chr20 22904023 . A ATTTTTTTT 0 PASS DP=39;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:7,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1993 chr20 24913641 . TG T 0 PASS DP=49;GPV=1;SPV=0.019011;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:8,2:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1994 chr20 25472324 . GATATAT G 0 PASS DP=22;GPV=1;SPV=0.039341;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1995 chr20 25594374 . C CT 0 PASS DP=29;GPV=1;SPV=0.0056638;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1996 chr20 25611226 . A T 0 PASS DP=39;GPV=1;SPV=0.026832;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:7,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1997 chr20 26220241 . C T 0 PASS DP=85;GPV=1;SPV=0.058134;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:24,1:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1998 chr20 26478052 . C A 0 PASS DP=188;GPV=1;SPV=0.047425;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:75,11:26,8:49,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1999 chr20 26568343 . GT G 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2000 chr20 26568349 . T A 0 PASS DP=25;GPV=1;SPV=0.29565;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:14,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2001 chr20 26697336 . G A 0 PASS DP=198;GPV=1;SPV=0.032344;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:89,19:39,10:50,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2002 chr20 27291338 . C T 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2003 chr20 28299891 . A C 0 PASS DP=84;GPV=1;SPV=0.048496;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:15,3:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2004 chr20 28546561 . T C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:3,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2005 chr20 28636613 . C G 0 PASS DP=114;GPV=1;SPV=0.012643;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:32,9:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2006 chr20 28638505 . GCCTTGGT G 0 PASS DP=163;GPV=1;SPV=0.0032755;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:64,18:40,8:24,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2007 chr20 28804568 . A G 0 PASS DP=192;GPV=1;SPV=0.03277;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:91,19:72,15:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2008 chr20 29076856 . TG T 0 PASS DP=82;GPV=1;SPV=0.014499;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2009 chr20 29105731 . AAT A 0 PASS DP=73;GPV=1;SPV=0.015946;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,5:10,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2010 chr20 29312353 . A C 0 PASS DP=40;GPV=1;SPV=0.023024;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:6,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2011 chr20 29312389 . AG A 0 PASS DP=38;GPV=1;SPV=0.0005304;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:6,5:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2012 chr20 29312393 . AAAG A 0 PASS DP=42;GPV=1;SPV=0.018356;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:8,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2013 chr20 29312487 . AAGGG A 0 PASS DP=47;GPV=1;SPV=0.035323;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:14,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2014 chr20 29513081 . G A 0 PASS DP=314;GPV=1;SPV=0.016919;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:134,17:88,13:46,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2015 chr20 29877931 . G A 0 PASS DP=306;GPV=1;SPV=0.043172;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:130,19:55,12:75,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2016 chr20 29880455 . G A 0 PASS DP=461;GPV=1;SPV=0.028207;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:193,33:106,16:87,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2017 chr20 30185432 . A G 0 PASS DP=65;GPV=1;SPV=0.027227;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:17,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2018 chr20 30198474 . T C 0 PASS DP=27;GPV=1;SPV=0.16176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2019 chr20 30217154 . A G 0 PASS DP=147;GPV=1;SPV=0.043773;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:58,10:32,6:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2020 chr20 30217160 . A C 0 PASS DP=134;GPV=1;SPV=0.028517;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:52,11:30,7:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2021 chr20 30296138 . C T 0 PASS DP=71;GPV=1;SPV=0.048995;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:13,2:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2022 chr20 30358649 . G A 0 PASS DP=83;GPV=1;SPV=0.024141;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:16,9:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2023 chr20 30401783 . TTTCTA T 0 PASS DP=138;GPV=1;SPV=0.026485;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:28,3:26,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2024 chr20 30638478 . T C 0 PASS DP=127;GPV=1;SPV=0.03661;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:57,14:24,2:33,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2025 chr20 30674344 . TA T 0 PASS DP=172;GPV=1;SPV=0.039831;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:77,16:37,8:40,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2026 chr20 30756951 . G GT 0 PASS DP=66;GPV=1;SPV=0.048775;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:14,1:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2027 chr20 30815445 . C T 0 PASS DP=232;GPV=1;SPV=0.024294;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:113,20:50,7:63,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2028 chr20 30820376 . G A 0 PASS DP=94;GPV=1;SPV=0.017537;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:17,2:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2029 chr20 30839004 . G T 0 PASS DP=144;GPV=1;SPV=0.01741;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:54,15:32,5:22,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2030 chr20 31056505 . TTGGAA T 0 PASS DP=38;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:11,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2031 chr20 31058549 . T A 0 PASS DP=109;GPV=1;SPV=0.037815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:42,13:24,7:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2032 chr20 31059753 . C A 0 PASS DP=204;GPV=1;SPV=0.033896;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:82,14:40,7:42,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2033 chr20 31061380 . GAATGGAATGT G 0 PASS DP=863;GPV=1;SPV=0.0043696;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:415:368,44:168,18:200,26
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2034 chr20 31063668 . A AGGAAT 0 PASS DP=219;GPV=1;SPV=0.0067066;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:80,13:52,7:28,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2035 chr20 31064863 . T A 0 PASS DP=257;GPV=1;SPV=0.019901;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:102,15:45,8:57,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2036 chr20 31069987 . T G 0 PASS DP=151;GPV=1;SPV=0.0013934;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:56,12:38,7:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2037 chr20 31082413 . G A 0 PASS DP=31;GPV=1;SPV=0.015968;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:9,2:3,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2038 chr20 31186507 . G C 0 PASS DP=58;GPV=1;SPV=0.025853;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2039 chr20 33329513 . TC T 0 PASS DP=63;GPV=1;SPV=6.0153e-06;SS=2;SSC=52;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:11,9:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2040 chr20 33329515 . G T 0 PASS DP=60;GPV=1;SPV=0.001032;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:31:0,16:0,8:0,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2041 chr20 36406397 . CA C 0 PASS DP=43;GPV=1;SPV=0.039259;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2042 chr20 37480584 . C T 0 PASS DP=21;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,5:0,1:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2043 chr20 37614567 . ATATATTTTT A 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2044 chr20 38209339 . C T 0 PASS DP=69;GPV=1;SPV=4.435e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:10,5:14,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2045 chr20 38379407 . A G 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:17,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2046 chr20 39238316 . C CA 0 PASS DP=47;GPV=1;SPV=0.011004;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,12:8,7:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2047 chr20 41000645 . G GAAAATAAAATAAAATAAAAT 0 PASS DP=36;GPV=1;SPV=0.012836;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,12:4,7:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2048 chr20 41918191 . TTTCC T 0 PASS DP=22;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,6:0,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2049 chr20 42516774 . C G 0 PASS DP=58;GPV=1;SPV=0.00011008;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:12,5:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2050 chr20 47184413 . CTT C 0 PASS DP=34;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:7,6:4,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2051 chr20 47255746 . A G 0 PASS DP=17;GPV=1;SPV=0.0090498;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2052 chr20 48160689 . T G 0 PASS DP=71;GPV=1;SPV=3.1812e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:20,25:8,12:12,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2053 chr20 48280400 . AT A 0 PASS DP=40;GPV=1;SPV=0.0038123;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:7,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2054 chr20 48514859 . C G 0 PASS DP=133;GPV=1;SPV=0.01884;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:25,7:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2055 chr20 49132759 . CCAAAA C 0 PASS DP=56;GPV=1;SPV=0.035929;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:8,7:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2056 chr20 49722846 . A AATAT 0 PASS DP=36;GPV=1;SPV=0.05132;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:9,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2057 chr20 49972568 . TA T 0 PASS DP=33;GPV=1;SPV=0.0044123;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,3:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2058 chr20 50162720 . G GACAC 0 PASS DP=57;GPV=1;SPV=0.051458;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2059 chr20 52881023 . T TTC 0 PASS DP=72;GPV=1;SPV=0.053561;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:20,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2060 chr20 52913480 . C CCTCTCTCT 0 PASS DP=23;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2061 chr20 53179221 . C T 0 PASS DP=55;GPV=1;SPV=0.0017056;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:7,3:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2062 chr20 54311908 . C A 0 PASS DP=66;GPV=1;SPV=3.2211e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:6,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2063 chr20 55408731 . C T 0 PASS DP=74;GPV=1;SPV=0.00035994;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:16,3:13,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2064 chr20 55734036 . G A 0 PASS DP=53;GPV=1;SPV=0.01291;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:8,6:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2065 chr20 56705597 . G A 0 PASS DP=83;GPV=1;SPV=0.00062884;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:18,9:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2066 chr20 58386147 . A ATTT 0 PASS DP=41;GPV=1;SPV=0.0082573;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2067 chr20 60875644 . T TCTTTCTTTCTTTCTTTCTTC 0 PASS DP=44;GPV=1;SPV=0.053977;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:6,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2068 chr20 61202206 . T TG 0 PASS DP=41;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,3:10,1:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2069 chr20 61214659 . A ATGTGTGTGTG 0 PASS DP=33;GPV=1;SPV=0.076601;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,7:5,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2070 chr20 61340589 . CT C 0 PASS DP=46;GPV=1;SPV=0.0028186;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2071 chr20 61868708 . G GTGTCCCCCCACACTGGGCGGA 0 PASS DP=56;GPV=1;SPV=0.015604;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,9:6,3:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2072 chr20 62313988 . AGT A 0 PASS DP=20;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2073 chr21 5216824 . A T 0 PASS DP=266;GPV=1;SPV=0.033361;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:118,15:66,9:52,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2074 chr21 5222177 . T A 0 PASS DP=233;GPV=1;SPV=0.0064634;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:81,18:28,8:53,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2075 chr21 5235224 . T G 0 PASS DP=454;GPV=1;SPV=0.0030909;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:239:215,24:88,15:127,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2076 chr21 5314304 . C T 0 PASS DP=24;GPV=1;SPV=0.047101;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2077 chr21 5367797 . T C 0 PASS DP=30;GPV=1;SPV=0.012914;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2078 chr21 6373962 . T A 0 PASS DP=285;GPV=1;SPV=0.019912;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:117,19:73,8:44,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2079 chr21 6375346 . T C 0 PASS DP=326;GPV=1;SPV=0.039471;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:176:156,20:77,4:79,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2080 chr21 7209105 . G A 0 PASS DP=39;GPV=1;SPV=0.0026385;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:0,1:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2081 chr21 7222022 . A G 0 PASS DP=96;GPV=1;SPV=0.021295;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:17,2:18,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2082 chr21 7225469 . C T 0 PASS DP=84;GPV=1;SPV=0.021579;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:21,3:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2083 chr21 7284211 . G A 0 PASS DP=89;GPV=1;SPV=0.019625;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:16,1:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2084 chr21 7307621 . G C 0 PASS DP=105;GPV=1;SPV=0.0019938;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:17,5:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2085 chr21 7921289 . T C 0 PASS DP=120;GPV=1;SPV=0.028675;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:50,13:24,7:26,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2086 chr21 7930121 . A G 0 PASS DP=195;GPV=1;SPV=0.046157;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:86,17:45,9:41,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2087 chr21 8229974 . C CCT 0 PASS DP=324;GPV=1;SPV=0.017801;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:113,14:19,4:94,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2088 chr21 8401672 . A G 0 PASS DP=1680;GPV=1;SPV=0.00098206;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:675:599,76:379,45:220,31
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2089 chr21 8434180 . T C 0 PASS DP=11481;GPV=1;SPV=0.0010525;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:5295:4745,549:2821,341:1924,208
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2090 chr21 8443332 . CT C 0 PASS DP=4328;GPV=1;SPV=0.0030189;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1924:1731,193:144,4:1587,189
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2091 chr21 8447275 . C T 0 PASS DP=28;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2092 chr21 8465033 . G A 0 PASS DP=1572;GPV=1;SPV=0.0013903;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:536:461,67:211,42:250,25
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2093 chr21 8540814 . A C 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:20,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2094 chr21 8554165 . G GATGAA 0 PASS DP=24;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2095 chr21 8584900 . AAAAG A 0 PASS DP=43;GPV=1;SPV=0.037765;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:6,3:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2096 chr21 8600030 . AATCATCATC A 0 PASS DP=25;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2097 chr21 8760950 . TATA T 0 PASS DP=267;GPV=1;SPV=0.038391;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:118,18:59,2:59,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2098 chr21 8762801 . C T 0 PASS DP=146;GPV=1;SPV=0.035066;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:67,14:34,9:33,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2099 chr21 8766588 . G T 0 PASS DP=209;GPV=1;SPV=0.0076057;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:86,20:35,9:51,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2100 chr21 8786330 . T TTA 0 PASS DP=303;GPV=1;SPV=0.01398;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:135,17:65,12:70,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2101 chr21 8793237 . C T 0 PASS DP=117;GPV=1;SPV=0.025634;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:15,9:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2102 chr21 8800254 . C T 0 PASS DP=174;GPV=1;SPV=0.033041;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:70,14:37,10:33,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2103 chr21 8806881 . CGCGT C 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:5,3:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2104 chr21 8839468 . G T 0 PASS DP=87;GPV=1;SPV=0.014375;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:8,5:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2105 chr21 8839785 . C T 0 PASS DP=169;GPV=1;SPV=0.044078;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:68,10:52,6:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2106 chr21 8840921 . C T 0 PASS DP=319;GPV=1;SPV=0.017205;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:136,19:46,2:90,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2107 chr21 8842183 . AC A 0 PASS DP=112;GPV=1;SPV=0.036589;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:17,8:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2108 chr21 8845410 . A C 0 PASS DP=97;GPV=1;SPV=0.038644;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:10,4:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2109 chr21 8848326 . G T 0 PASS DP=209;GPV=1;SPV=0.027845;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:102,15:51,4:51,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2110 chr21 8851808 . T G 0 PASS DP=369;GPV=1;SPV=0.002886;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:158,35:73,16:85,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2111 chr21 8854791 . G A 0 PASS DP=157;GPV=1;SPV=0.0017759;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:11,8:33,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2112 chr21 8858689 . T A 0 PASS DP=338;GPV=1;SPV=0.024747;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:153,29:86,9:67,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2113 chr21 8879134 . T G 0 PASS DP=448;GPV=1;SPV=0.012621;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:220:196,24:111,11:85,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2114 chr21 8880786 . T G 0 PASS DP=222;GPV=1;SPV=0.008366;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:106,15:41,3:65,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2115 chr21 8999488 . A T 0 PASS DP=318;GPV=1;SPV=0.031407;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:138,19:76,7:62,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2116 chr21 9004659 . A T 0 PASS DP=149;GPV=1;SPV=0.0011357;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:53,16:29,8:24,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2117 chr21 9016088 . G C 0 PASS DP=309;GPV=1;SPV=0.017335;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:134,21:73,16:61,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2118 chr21 9016237 . A G 0 PASS DP=369;GPV=1;SPV=0.0115;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:153,28:76,15:77,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2119 chr21 9026251 . G A 0 PASS DP=312;GPV=1;SPV=0.016619;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:130,23:62,17:68,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2120 chr21 9026268 . T C 0 PASS DP=327;GPV=1;SPV=0.013028;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:137,22:65,17:72,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2121 chr21 9032681 . C T 0 PASS DP=332;GPV=1;SPV=0.04664;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:146,18:69,11:77,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2122 chr21 9050202 . G A 0 PASS DP=111;GPV=1;SPV=0.04952;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:46,14:23,6:23,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2123 chr21 9064459 . G A 0 PASS DP=273;GPV=1;SPV=0.036768;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:127,16:68,6:59,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2124 chr21 9086619 . C T 0 PASS DP=335;GPV=1;SPV=0.026265;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:132,22:73,11:59,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2125 chr21 9102967 . T C 0 PASS DP=332;GPV=1;SPV=0.0097214;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:144,17:73,14:71,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2126 chr21 9108624 . G A 0 PASS DP=202;GPV=1;SPV=0.031242;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:84,11:46,5:38,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2127 chr21 9118263 . G A 0 PASS DP=367;GPV=1;SPV=0.012376;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:156,35:91,23:65,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2128 chr21 9118901 . G A 0 PASS DP=406;GPV=1;SPV=0.014637;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:202:170,32:97,18:73,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2129 chr21 9121545 . A T 0 PASS DP=263;GPV=1;SPV=0.00068551;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:109,23:50,14:59,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2130 chr21 9121963 . C T 0 PASS DP=223;GPV=1;SPV=0.033951;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:92,17:55,10:37,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2131 chr21 9131132 . C T 0 PASS DP=454;GPV=1;SPV=0.036715;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:222:196,26:98,9:98,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2132 chr21 9132966 . G C 0 PASS DP=412;GPV=1;SPV=0.024501;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:165,26:84,9:81,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2133 chr21 9142219 . T A 0 PASS DP=508;GPV=1;SPV=0.024478;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:251:217,34:112,16:105,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2134 chr21 9165984 . A G 0 PASS DP=377;GPV=1;SPV=0.0079952;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:190:111,23:56,13:55,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2135 chr21 9167416 . A G 0 PASS DP=357;GPV=1;SPV=0.044098;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:189:167,22:103,4:64,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2136 chr21 9172802 . A G 0 PASS DP=376;GPV=1;SPV=0.013747;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:161,22:100,11:61,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2137 chr21 9173280 . T A 0 PASS DP=390;GPV=1;SPV=0.013109;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:199:168,31:72,11:96,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2138 chr21 9174974 . G T 0 PASS DP=258;GPV=1;SPV=0.031092;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:114,17:43,7:71,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2139 chr21 9189404 . C T 0 PASS DP=417;GPV=1;SPV=0.043995;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:203:179,24:85,13:94,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2140 chr21 9248111 . G T 0 PASS DP=432;GPV=1;SPV=0.033383;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:216:190,26:89,10:101,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2141 chr21 9248375 . CAGTGG C 0 PASS DP=350;GPV=1;SPV=0.0208;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:115,25:67,21:48,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2142 chr21 9251567 . T C 0 PASS DP=1009;GPV=1;SPV=0.00015531;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:529:455,74:218,39:237,35
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2143 chr21 9254687 . A G 0 PASS DP=489;GPV=1;SPV=0.0030471;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:234:201,33:105,19:96,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2144 chr21 9262060 . CTT C 0 PASS DP=248;GPV=1;SPV=0.026434;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:116,14:63,10:53,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2145 chr21 9265351 . G GT 0 PASS DP=426;GPV=1;SPV=0.0053784;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:166,33:87,19:79,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2146 chr21 9272355 . A G 0 PASS DP=193;GPV=1;SPV=0.022441;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:90,10:37,7:53,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2147 chr21 9274547 . A C 0 PASS DP=347;GPV=1;SPV=0.047456;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:173:144,26:110,15:34,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2148 chr21 9292728 . C A 0 PASS DP=490;GPV=1;SPV=0.0051027;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:237:196,41:102,22:94,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2149 chr21 9296111 . T C 0 PASS DP=282;GPV=1;SPV=0.0071273;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:125,17:43,7:82,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2150 chr21 9296276 . G C 0 PASS DP=399;GPV=1;SPV=0.0094903;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:180,29:108,16:72,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2151 chr21 9303023 . C T 0 PASS DP=413;GPV=1;SPV=0.031045;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:182,25:96,9:86,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2152 chr21 9310548 . A G 0 PASS DP=353;GPV=1;SPV=0.046618;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:141,19:70,9:71,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2153 chr21 9324691 . A C 0 PASS DP=108;GPV=1;SPV=0.049403;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:49,9:23,3:26,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2154 chr21 9330352 . G A 0 PASS DP=266;GPV=1;SPV=0.011472;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:112,13:57,7:55,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2155 chr21 9331411 . G A 0 PASS DP=363;GPV=1;SPV=0.040762;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:154,23:68,11:86,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2156 chr21 9342123 . C T 0 PASS DP=415;GPV=1;SPV=0.018889;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:206:180,26:86,9:94,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2157 chr21 9345074 . C T 0 PASS DP=428;GPV=1;SPV=0.00093647;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:201,32:111,23:90,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2158 chr21 9348919 . G T 0 PASS DP=335;GPV=1;SPV=0.0015484;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:187:161,26:80,18:81,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2159 chr21 9361283 . G A 0 PASS DP=650;GPV=1;SPV=0.013952;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:333:296,37:135,19:161,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2160 chr21 9365190 . T C 0 PASS DP=618;GPV=1;SPV=0.0045248;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:320:269,51:137,36:132,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2161 chr21 9365624 . G T 0 PASS DP=588;GPV=1;SPV=0.024203;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:298:261,37:92,17:169,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2162 chr21 9556399 . A G 0 PASS DP=139;GPV=1;SPV=0.0091486;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:57,21:29,7:28,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2163 chr21 9606113 . G A 0 PASS DP=159;GPV=1;SPV=0.031226;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:68,19:24,6:44,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2164 chr21 9628172 . T G 0 PASS DP=154;GPV=1;SPV=0.0069375;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:52,18:26,13:26,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2165 chr21 9638268 . G A 0 PASS DP=137;GPV=1;SPV=8.9074e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:27,13:25,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2166 chr21 9765488 . A AGTGTAGTGAATGATGGGACAGT 0 PASS DP=110;GPV=1;SPV=0.0041422;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:42,19:21,13:21,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2167 chr21 9821495 . G C 0 PASS DP=1275;GPV=1;SPV=0.046842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:607:499,67:285,26:214,41
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2168 chr21 9850023 . A G 0 PASS DP=136;GPV=1;SPV=0.018431;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:61,8:27,3:34,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2169 chr21 9881159 . T C 0 PASS DP=157;GPV=1;SPV=0.0019529;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:57,22:27,8:30,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2170 chr21 9919461 . C A 0 PASS DP=111;GPV=1;SPV=0.039548;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:52,13:28,9:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2171 chr21 9990371 . A C 0 PASS DP=126;GPV=1;SPV=0.020704;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:53,14:24,4:29,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2172 chr21 10021470 . C G 0 PASS DP=143;GPV=1;SPV=0.0040553;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:48,18:16,6:32,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2173 chr21 10080386 . A T 0 PASS DP=156;GPV=1;SPV=0.040884;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:65,17:41,7:24,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2174 chr21 10086175 . C T 0 PASS DP=151;GPV=1;SPV=0.0010453;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:54,24:30,14:24,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2175 chr21 10097757 . T A 0 PASS DP=136;GPV=1;SPV=0.0084706;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:45,16:29,12:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2176 chr21 10151268 . T C 0 PASS DP=140;GPV=1;SPV=0.049348;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:59,13:35,8:24,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2177 chr21 10272847 . C A 0 PASS DP=51;GPV=1;SPV=0.00045089;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,5:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2178 chr21 10324728 . T C 0 PASS DP=82;GPV=1;SPV=0.039697;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:14,3:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2179 chr21 10329291 . C T 0 PASS DP=323;GPV=1;SPV=0.016545;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:125,23:53,8:72,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2180 chr21 10342477 . C A 0 PASS DP=372;GPV=1;SPV=0.046158;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:189:166,23:87,8:79,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2181 chr21 10361114 . C G 0 PASS DP=593;GPV=1;SPV=0.024432;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:293:254,39:133,18:121,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2182 chr21 10365143 . C G 0 PASS DP=88;GPV=1;SPV=0.013531;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:23,4:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2183 chr21 10392780 . C T 0 PASS DP=183;GPV=1;SPV=0.028575;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:73,14:22,4:51,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2184 chr21 10406244 . C T 0 PASS DP=164;GPV=1;SPV=0.0021767;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:76,9:17,2:59,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2185 chr21 10415521 . G T 0 PASS DP=381;GPV=1;SPV=0.00088859;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:146,37:72,16:74,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2186 chr21 10415652 . G A 0 PASS DP=418;GPV=1;SPV=0.010425;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:195:163,32:102,22:61,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2187 chr21 10417512 . G A 0 PASS DP=629;GPV=1;SPV=0.018643;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:323:275,48:164,25:111,23
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2188 chr21 10419095 . G A 0 PASS DP=598;GPV=1;SPV=0.020884;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:296:260,36:116,20:144,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2189 chr21 10420063 . G T 0 PASS DP=237;GPV=1;SPV=0.0094397;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:98,25:40,12:58,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2190 chr21 10422931 . G GT 0 PASS DP=263;GPV=1;SPV=0.049712;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:105,13:71,9:34,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2191 chr21 10425535 . G A 0 PASS DP=585;GPV=1;SPV=0.025935;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:302:264,38:133,18:131,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2192 chr21 10429776 . A G 0 PASS DP=602;GPV=1;SPV=0.049364;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:300:263,37:128,21:135,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2193 chr21 10430637 . C T 0 PASS DP=471;GPV=1;SPV=0.005776;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:231:201,30:102,15:99,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2194 chr21 10437112 . A G 0 PASS DP=393;GPV=1;SPV=0.046443;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:173,27:68,8:105,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2195 chr21 10445465 . T A 0 PASS DP=130;GPV=1;SPV=0.048543;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:61,9:29,7:32,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2196 chr21 10449982 . C G 0 PASS DP=302;GPV=1;SPV=0.018207;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:115,24:59,7:56,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2197 chr21 10449987 . TATTTC T 0 PASS DP=316;GPV=1;SPV=0.037054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:127,19:68,5:59,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2198 chr21 10451024 . A C 0 PASS DP=406;GPV=1;SPV=0.02949;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:161,25:73,8:88,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2199 chr21 10461146 . T C 0 PASS DP=344;GPV=1;SPV=0.020052;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:143,25:75,14:68,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2200 chr21 10462629 . C T 0 PASS DP=385;GPV=1;SPV=0.014232;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:158,35:74,16:84,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2201 chr21 10464875 . G A 0 PASS DP=412;GPV=1;SPV=0.015602;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:215:179,36:80,20:99,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2202 chr21 10467788 . C G 0 PASS DP=398;GPV=1;SPV=0.0066795;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:156,25:84,10:72,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2203 chr21 10475546 . C T 0 PASS DP=307;GPV=1;SPV=0.025186;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:130,19:54,8:76,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2204 chr21 10583185 . C A 0 PASS DP=151;GPV=1;SPV=1.6182e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:54,16:32,10:22,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2205 chr21 10665385 . A G 0 PASS DP=127;GPV=1;SPV=0.021267;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:51,15:26,7:25,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2206 chr21 10693311 . C A 0 PASS DP=127;GPV=1;SPV=0.040129;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:20,7:25,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2207 chr21 10744491 . C G 0 PASS DP=99;GPV=1;SPV=0.0060775;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,8:25,4:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2208 chr21 10745524 . G A 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:25,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2209 chr21 10806728 . G A 0 PASS DP=353;GPV=1;SPV=0.015258;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:161,19:79,9:82,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2210 chr21 13282962 . T C 0 PASS DP=61;GPV=1;SPV=0.046772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2211 chr21 13330523 . TTATCTATC T 0 PASS DP=19;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:0,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2212 chr21 13352710 . G T 0 PASS DP=52;GPV=1;SPV=0.00012397;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2213 chr21 13432290 . T G 0 PASS DP=65;GPV=1;SPV=0.029835;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:12,5:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2214 chr21 13524811 . T C 0 PASS DP=64;GPV=1;SPV=0.031128;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:14,1:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2215 chr21 13530697 . G T 0 PASS DP=78;GPV=1;SPV=0.046744;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:14,5:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2216 chr21 18194603 . TA T 0 PASS DP=65;GPV=1;SPV=9.7744e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2217 chr21 19227218 . A C 0 PASS DP=56;GPV=1;SPV=0.047782;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2218 chr21 20508555 . T G 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2219 chr21 21994806 . A G 0 PASS DP=42;GPV=1;SPV=0.16587;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,5:7,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2220 chr21 23072541 . CTT C 0 PASS DP=22;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2221 chr21 23219743 . A T 0 PASS DP=64;GPV=1;SPV=2.6336e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:13,2:5,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2222 chr21 23685848 . G A 0 PASS DP=60;GPV=1;SPV=0.038906;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:15,5:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2223 chr21 24811016 . G T 0 PASS DP=65;GPV=1;SPV=0.0025828;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,8:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2224 chr21 25655350 . A AT 0 PASS DP=40;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2225 chr21 26062230 . A AAC 0 PASS DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2226 chr21 27240865 . G A 0 PASS DP=66;GPV=1;SPV=0.00026636;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,7:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2227 chr21 27257780 . T A 0 PASS DP=66;GPV=1;SPV=0.00075779;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:11,5:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2228 chr21 27940507 . CTGTG C 0 PASS DP=40;GPV=1;SPV=0.0092633;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2229 chr21 28413998 . T TC 0 PASS DP=28;GPV=1;SPV=0.03733;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,6:2,1:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2230 chr21 28831522 . AGAAG A 0 PASS DP=37;GPV=1;SPV=0.030571;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2231 chr21 30571058 . T G 0 PASS DP=85;GPV=1;SPV=0.015937;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:14,3:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2232 chr21 31941311 . T C 0 PASS DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:7,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2233 chr21 32481509 . G GA 0 PASS DP=20;GPV=1;SPV=0.004816;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2234 chr21 33237082 . T G 0 PASS DP=40;GPV=1;SPV=0.031374;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:5,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2235 chr21 33337714 . TATAC T 0 PASS DP=48;GPV=1;SPV=0.015793;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2236 chr21 34671143 . G A 0 PASS DP=33;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,3:2,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2237 chr21 34787254 . C A 0 PASS DP=57;GPV=1;SPV=0.00019352;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:7,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2238 chr21 35526972 . CA C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2239 chr21 35704576 . GAGAA G 0 PASS DP=17;GPV=1;SPV=0.012821;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:2,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2240 chr21 35960240 . CTCTCTA C 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2241 chr21 36176106 . G A 0 PASS DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2242 chr21 37004264 . G A 0 PASS DP=20;GPV=1;SPV=0.026006;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2243 chr21 37033999 . C T 0 PASS DP=36;GPV=1;SPV=0.013362;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2244 chr21 37389925 . G GT 0 PASS DP=40;GPV=1;SPV=0.021798;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:7,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2245 chr21 39177130 . T A 0 PASS DP=69;GPV=1;SPV=6.2544e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:15,6:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2246 chr21 39245602 . T G 0 PASS DP=63;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2247 chr21 39378669 . T C 0 PASS DP=41;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2248 chr21 39715048 . CT C 0 PASS DP=54;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:0,2:0,0:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2249 chr21 39819608 . TCTATC T 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2250 chr21 39953826 . C CT 0 PASS DP=26;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2251 chr21 40898219 . T G 0 PASS DP=54;GPV=1;SPV=0.0052114;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:11,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2252 chr21 42840044 . A G 0 PASS DP=28;GPV=1;SPV=0.021256;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2253 chr21 44863127 . G GAC 0 PASS DP=65;GPV=1;SPV=0.043229;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,6:16,5:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2254 chr21 44972960 . G A 0 PASS DP=64;GPV=1;SPV=0.029276;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:11,4:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2255 chr21 44973001 . G A 0 PASS DP=62;GPV=1;SPV=0.0041395;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:11,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2256 chr21 45902313 . G A 0 PASS DP=30;GPV=1;SPV=0.0076628;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2257 chr21 46294304 . G A 0 PASS DP=49;GPV=1;SPV=0.015045;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2258 chr22 10547332 . T A 0 PASS DP=22;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2259 chr22 10550830 . A C 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:17,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2260 chr22 10709382 . CT C 0 PASS DP=366;GPV=1;SPV=0.023069;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:167,29:97,14:70,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2261 chr22 10753801 . A G 0 PASS DP=320;GPV=1;SPV=0.04636;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:140,23:64,12:76,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2262 chr22 10754578 . A G 0 PASS DP=386;GPV=1;SPV=0.04514;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:164,27:62,5:102,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2263 chr22 10761243 . C CAAA 0 PASS DP=39;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,8:6,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2264 chr22 10765275 . G A 0 PASS DP=178;GPV=1;SPV=0.018029;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:18,9:42,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2265 chr22 10780040 . A C 0 PASS DP=296;GPV=1;SPV=0.011605;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:120,27:71,14:49,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2266 chr22 11027060 . A G 0 PASS DP=315;GPV=1;SPV=0.045494;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:135,19:86,9:49,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2267 chr22 11338143 . C T 0 PASS DP=218;GPV=1;SPV=0.04179;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:103,22:55,13:48,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2268 chr22 11348943 . A C 0 PASS DP=160;GPV=1;SPV=0.039295;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:70,12:29,7:41,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2269 chr22 11477170 . C T 0 PASS DP=184;GPV=1;SPV=0.041719;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:66,15:33,9:33,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2270 chr22 11696409 . A G 0 PASS DP=39;GPV=1;SPV=0.00756;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:2,1:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2271 chr22 11704981 . T A 0 PASS DP=88;GPV=1;SPV=0.03093;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,7:25,6:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2272 chr22 11710948 . A G 0 PASS DP=132;GPV=1;SPV=0.019466;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:53,15:36,11:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2273 chr22 11801203 . C G 0 PASS DP=148;GPV=1;SPV=0.045184;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:58,15:37,9:21,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2274 chr22 11808059 . T C 0 PASS DP=227;GPV=1;SPV=0.039916;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:96,19:56,10:40,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2275 chr22 11854158 . TA T 0 PASS DP=47;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,2:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2276 chr22 11863430 . G C 0 PASS DP=118;GPV=1;SPV=0.026088;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:16,3:24,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2277 chr22 11870867 . T C 0 PASS DP=136;GPV=1;SPV=0.0070634;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:53,17:34,15:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2278 chr22 11871871 . T A 0 PASS DP=685;GPV=1;SPV=0.032896;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:347:311,36:178,18:133,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2279 chr22 11874817 . T C 0 PASS DP=324;GPV=1;SPV=0.025014;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:145,19:93,8:52,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2280 chr22 11912157 . G T 0 PASS DP=191;GPV=1;SPV=0.034312;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:77,19:38,11:39,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2281 chr22 11912224 . C T 0 PASS DP=193;GPV=1;SPV=0.042527;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:79,15:34,8:45,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2282 chr22 11913684 . G A 0 PASS DP=363;GPV=1;SPV=0.035839;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:140,28:45,9:95,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2283 chr22 11914787 . T C 0 PASS DP=411;GPV=1;SPV=0.046627;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:212:183,29:109,15:74,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2284 chr22 11917800 . A G 0 PASS DP=585;GPV=1;SPV=0.029142;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:297:258,39:118,20:140,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2285 chr22 11940484 . T C 0 PASS DP=101;GPV=1;SPV=0.011798;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:26,2:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2286 chr22 11942962 . CA C 0 PASS DP=129;GPV=1;SPV=0.0055173;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:47,12:33,10:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2287 chr22 11972802 . G A 0 PASS DP=142;GPV=1;SPV=0.0050678;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:50,19:27,9:23,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2288 chr22 11974475 . C A 0 PASS DP=178;GPV=1;SPV=0.037788;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:64,10:13,5:51,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2289 chr22 12036085 . C A 0 PASS DP=334;GPV=1;SPV=0.0045758;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:141,18:61,11:80,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2290 chr22 12060744 . A G 0 PASS DP=41;GPV=1;SPV=0.016594;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:2,2:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2291 chr22 12112120 . G T 0 PASS DP=150;GPV=1;SPV=0.029151;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:58,16:28,6:30,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2292 chr22 12119341 . A C 0 PASS DP=142;GPV=1;SPV=0.0067648;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:30,2:22,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2293 chr22 12154648 . C A 0 PASS DP=98;GPV=1;SPV=0.015096;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:22,2:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2294 chr22 12166049 . G A 0 PASS DP=66;GPV=1;SPV=0.028904;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:14,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2295 chr22 12193191 . G T 0 PASS DP=189;GPV=1;SPV=0.0023926;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:74,20:50,8:24,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2296 chr22 12193684 . A G 0 PASS DP=218;GPV=1;SPV=0.047103;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:108,16:53,7:55,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2297 chr22 12199201 . A C 0 PASS DP=333;GPV=1;SPV=0.015491;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:130,19:55,11:75,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2298 chr22 12200388 . G A 0 PASS DP=344;GPV=1;SPV=0.014258;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:172:152,20:76,9:76,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2299 chr22 12209191 . T G 0 PASS DP=157;GPV=1;SPV=0.0033214;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:55,17:30,8:25,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2300 chr22 12218039 . C T 0 PASS DP=89;GPV=1;SPV=0.012776;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:40,14:25,5:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2301 chr22 12218817 . TTATTTA T 0 PASS DP=161;GPV=1;SPV=0.0064636;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:67,21:42,16:25,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2302 chr22 12295505 . A G 0 PASS DP=129;GPV=1;SPV=0.033746;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:63,8:23,1:40,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2303 chr22 12315376 . A AG 0 PASS DP=60;GPV=1;SPV=0.0562;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2304 chr22 12315438 . A G 0 PASS DP=80;GPV=1;SPV=0.0096691;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:24,8:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2305 chr22 12362977 . A G 0 PASS DP=183;GPV=1;SPV=0.04804;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:83,10:50,6:33,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2306 chr22 12368037 . G A 0 PASS DP=121;GPV=1;SPV=0.038911;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:46,14:23,5:23,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2307 chr22 12421244 . TA T 0 PASS DP=166;GPV=1;SPV=0.011472;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:70,10:39,4:31,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2308 chr22 12559389 . TG T 0 PASS DP=198;GPV=1;SPV=0.047491;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:71,13:32,6:39,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2309 chr22 12619844 . C T 0 PASS DP=139;GPV=1;SPV=0.014369;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:63,14:32,10:31,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2310 chr22 12637781 . TAAG T 0 PASS DP=46;GPV=1;SPV=0.054264;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:19,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2311 chr22 12703951 . G T 0 PASS DP=193;GPV=1;SPV=0.048991;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:83,18:50,12:33,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2312 chr22 12709021 . A C 0 PASS DP=217;GPV=1;SPV=0.018392;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:94,11:55,6:39,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2313 chr22 12720922 . C G 0 PASS DP=193;GPV=1;SPV=0.038263;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:75,14:31,9:44,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2314 chr22 12721011 . A G 0 PASS DP=279;GPV=1;SPV=0.044359;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:105,21:41,9:64,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2315 chr22 12787768 . C A 0 PASS DP=51;GPV=1;SPV=0.044641;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2316 chr22 12804136 . T A 0 PASS DP=70;GPV=1;SPV=0.048003;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:15,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2317 chr22 12811984 . A C 0 PASS DP=176;GPV=1;SPV=0.019622;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:66,19:28,10:38,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2318 chr22 12871086 . C G 0 PASS DP=208;GPV=1;SPV=0.043857;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:78,14:51,7:27,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2319 chr22 12875723 . T A 0 PASS DP=299;GPV=1;SPV=0.0087155;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:111,27:30,14:81,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2320 chr22 12879835 . G A 0 PASS DP=150;GPV=1;SPV=0.01238;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:71,19:47,8:24,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2321 chr22 12889651 . G A 0 PASS DP=234;GPV=1;SPV=0.047833;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:101,12:71,10:30,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2322 chr22 12891489 . C T 0 PASS DP=181;GPV=1;SPV=0.04238;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:73,10:42,6:31,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2323 chr22 13533510 . G C 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2324 chr22 15220225 . C T 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2325 chr22 15480387 . G A 0 PASS DP=34;GPV=1;SPV=0.0083426;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2326 chr22 15562148 . A G 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2327 chr22 15748494 . C A 0 PASS DP=102;GPV=1;SPV=0.042235;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:24,6:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2328 chr22 15752140 . T A 0 PASS DP=39;GPV=1;SPV=0.044153;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2329 chr22 15787648 . TTG T 0 PASS DP=102;GPV=1;SPV=0.033621;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:14,5:29,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2330 chr22 15815076 . C G 0 PASS DP=110;GPV=1;SPV=0.049247;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:47,10:25,5:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2331 chr22 15837952 . T TTTCTTTCTTTC 0 PASS DP=101;GPV=1;SPV=0.026661;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,5:19,2:25,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2332 chr22 15856012 . T C 0 PASS DP=105;GPV=1;SPV=0.011448;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:38,13:22,6:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2333 chr22 15881643 . G T 0 PASS DP=23;GPV=1;SPV=0.047431;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2334 chr22 16164202 . CT C 0 PASS DP=42;GPV=1;SPV=0.0006592;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2335 chr22 16416347 . T G 0 PASS DP=77;GPV=1;SPV=0.044716;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:11,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2336 chr22 16431788 . A AT 0 PASS DP=72;GPV=1;SPV=0.0025099;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:11,11:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2337 chr22 16434619 . A T 0 PASS DP=82;GPV=1;SPV=0.011955;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:18,5:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2338 chr22 16450533 . C T 0 PASS DP=144;GPV=1;SPV=0.038122;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:52,12:25,8:27,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2339 chr22 17178722 . A AGAGTGAT 0 PASS DP=28;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:5,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2340 chr22 17343151 . G GT 0 PASS DP=51;GPV=1;SPV=0.0086626;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2341 chr22 17605694 . T TC 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:5,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2342 chr22 17626325 . A AAAAG 0 PASS DP=35;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,8:2,1:0,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2343 chr22 18125513 . C CA 0 PASS DP=31;GPV=1;SPV=0.025708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:9,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2344 chr22 18188614 . A T 0 PASS DP=44;GPV=1;SPV=0.048922;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:15,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2345 chr22 18234348 . A C 0 PASS DP=76;GPV=1;SPV=0.051478;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:15,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2346 chr22 18363031 . G GA 0 PASS DP=79;GPV=1;SPV=0.012473;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:13,4:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2347 chr22 18846304 . A C 0 PASS DP=26;GPV=1;SPV=0.034783;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2348 chr22 18982721 . C CAAA 0 PASS DP=22;GPV=1;SPV=0.025058;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,5:0,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2349 chr22 20164469 . C T 0 PASS DP=53;GPV=1;SPV=0.035289;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2350 chr22 20341553 . G A 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:1,2:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2351 chr22 20343677 . G A 0 PASS DP=111;GPV=1;SPV=0.0022919;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:44,17:21,10:23,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2352 chr22 21135936 . G A 0 PASS DP=122;GPV=1;SPV=0.011147;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:53,6:30,3:23,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2353 chr22 21166611 . G T 0 PASS DP=28;GPV=1;SPV=0.11832;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2354 chr22 21166864 . A T 0 PASS DP=35;GPV=1;SPV=0.0017012;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2355 chr22 21170330 . G C 0 PASS DP=22;GPV=1;SPV=0.012384;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2356 chr22 21313803 . G A 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:12,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2357 chr22 21335516 . C G 0 PASS DP=63;GPV=1;SPV=0.024638;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:12,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2358 chr22 21789843 . T TATAACATAACATAACATAAC 0 PASS DP=47;GPV=1;SPV=0.040169;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:8,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2359 chr22 22517876 . T TAAA 0 PASS DP=42;GPV=1;SPV=0.02002;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2360 chr22 23331669 . A AATTATTATT 0 PASS DP=35;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,7:0,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2361 chr22 23855210 . C T 0 PASS DP=22;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:2,2:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2362 chr22 26451996 . G A 0 PASS DP=36;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,2:0,1:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2363 chr22 29159124 . G GT 0 PASS DP=25;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2364 chr22 29402766 . G T 0 PASS DP=48;GPV=1;SPV=0.012187;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:10,2:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2365 chr22 29535261 . C CA 0 PASS DP=23;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2366 chr22 30076606 . C T 0 PASS DP=77;GPV=1;SPV=4.4205e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:15,6:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2367 chr22 30308332 . A C 0 PASS DP=70;GPV=1;SPV=0.044913;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:14,8:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2368 chr22 32505862 . T C 0 PASS DP=43;GPV=1;SPV=0.0023186;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2369 chr22 32799358 . G A 0 PASS DP=56;GPV=1;SPV=0.0038291;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:11,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2370 chr22 33201344 . A G 0 PASS DP=41;GPV=1;SPV=0.087179;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,5:7,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2371 chr22 33282639 . C T 0 PASS DP=75;GPV=1;SPV=0.00017455;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:11,6:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2372 chr22 33403962 . T A 0 PASS DP=52;GPV=1;SPV=0.0014018;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:8,3:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2373 chr22 35694644 . T C 0 PASS DP=60;GPV=1;SPV=0.027592;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2374 chr22 39018818 . CAAA C 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:10,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2375 chr22 41132286 . CT C 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2376 chr22 41167560 . TTGTGTGTG T 0 PASS DP=29;GPV=1;SPV=0.057118;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2377 chr22 41194019 . A G 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:6,2:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2378 chr22 42666228 . CA C 0 PASS DP=36;GPV=1;SPV=0.013014;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2379 chr22 44284901 . T G 0 PASS DP=47;GPV=1;SPV=0.052629;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:8,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2380 chr22 45182623 . G GT 0 PASS DP=35;GPV=1;SPV=0.0049438;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,6:3,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2381 chr22 47493701 . G A 0 PASS DP=63;GPV=1;SPV=3.4873e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2382 chr22 49072416 . A AAAAAGAAG 0 PASS DP=30;GPV=1;SPV=0.25455;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,4:3,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2383 chr22 50021649 . T C 0 PASS DP=25;GPV=1;SPV=0.0099771;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2384 chr3 1119322 . C CGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=25;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2385 chr3 1170236 . C CA 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2386 chr3 1210426 . A G 0 PASS DP=46;GPV=1;SPV=0.029963;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:12,5:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2387 chr3 1348241 . A G 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2388 chr3 2226518 . AATT A 0 PASS DP=49;GPV=1;SPV=7.6384e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:8,9:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2389 chr3 2520259 . CTTT C 0 PASS DP=25;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:4,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2390 chr3 3339466 . G T 0 PASS DP=25;GPV=1;SPV=0.062937;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2391 chr3 3762779 . A T 0 PASS DP=38;GPV=1;SPV=0.04484;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2392 chr3 5306469 . ATGTG A 0 PASS DP=34;GPV=1;SPV=0.02882;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2393 chr3 8831343 . A G 0 PASS DP=37;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,5:3,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2394 chr3 9972462 . GAAA G 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2395 chr3 11294017 . CA C 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2396 chr3 12221298 . CTT C 0 PASS DP=25;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2397 chr3 14738817 . T A 0 PASS DP=38;GPV=1;SPV=0.10277;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,5:7,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2398 chr3 16633137 . C CA 0 PASS DP=36;GPV=1;SPV=0.0066141;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,6:1,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2399 chr3 18846669 . G GT 0 PASS DP=37;GPV=1;SPV=0.046332;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2400 chr3 19293817 . G A 0 PASS DP=56;GPV=1;SPV=0.0040349;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:12,6:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2401 chr3 20018690 . C T 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2402 chr3 20312112 . A C 0 PASS DP=46;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,2:2,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2403 chr3 20356709 . A T 0 PASS DP=57;GPV=1;SPV=0.00069576;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:8,2:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2404 chr3 20595413 . G T 0 PASS DP=69;GPV=1;SPV=9.2171e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:14,8:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2405 chr3 21148171 . A C 0 PASS DP=18;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,3:3,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2406 chr3 21193894 . C T 0 PASS DP=52;GPV=1;SPV=0.0054797;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:9,6:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2407 chr3 22380646 . G GGTGTGTGTGT 0 PASS DP=52;GPV=1;SPV=0.0068755;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,5:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2408 chr3 22541727 . ATATATGTG A 0 PASS DP=37;GPV=1;SPV=0.030792;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:7,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2409 chr3 22541750 . CATATATATGTGTACAT C 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2410 chr3 22813731 . CT C 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2411 chr3 23196721 . T A 0 PASS DP=55;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2412 chr3 23842245 . GT G 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2413 chr3 25785136 . A C 0 PASS DP=31;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2414 chr3 27204305 . T TTTG 0 PASS DP=23;GPV=1;SPV=0.11053;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:0,0:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2415 chr3 27884071 . GAT G 0 PASS DP=30;GPV=1;SPV=0.13793;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:7,2:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2416 chr3 28255241 . C CT 0 PASS DP=26;GPV=1;SPV=0.011037;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2417 chr3 28649287 . G A 0 PASS DP=49;GPV=1;SPV=0.017646;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2418 chr3 29475379 . G T 0 PASS DP=50;GPV=1;SPV=0.0033004;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:8,6:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2419 chr3 30034589 . AAAGGAAGGAAGGAAGG A 0 PASS DP=20;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:1,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2420 chr3 32249030 . CTTTTTTTT C 0 PASS DP=17;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:1,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2421 chr3 32721647 . CT C 0 PASS DP=32;GPV=1;SPV=0.027191;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2422 chr3 35253133 . T G 0 PASS DP=58;GPV=1;SPV=0.0033254;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:9,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2423 chr3 35305121 . A G 0 PASS DP=54;GPV=1;SPV=0.030376;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:18,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2424 chr3 36104907 . C A 0 PASS DP=39;GPV=1;SPV=0.020196;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2425 chr3 36183915 . C CT 0 PASS DP=39;GPV=1;SPV=0.016738;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,10:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2426 chr3 36346943 . AG A 0 PASS DP=36;GPV=1;SPV=0.00077087;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2427 chr3 36515975 . CT C 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2428 chr3 40846033 . C CAG 0 PASS DP=39;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,5:8,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2429 chr3 42349199 . T TTC 0 PASS DP=37;GPV=1;SPV=0.0070739;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:2,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2430 chr3 42349200 . C T 0 PASS DP=36;GPV=1;SPV=0.016242;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:2,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2431 chr3 42743587 . T TTATATATATATATATATATATA 0 PASS DP=35;GPV=1;SPV=0.0084353;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:4,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2432 chr3 44723874 . G T 0 PASS DP=49;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,5:1,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2433 chr3 45415897 . A G 0 PASS DP=31;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,4:1,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2434 chr3 45569952 . CT C 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2435 chr3 46372541 . A G 0 PASS DP=65;GPV=1;SPV=0.039302;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:15,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2436 chr3 46441899 . CAGAGAG C 0 PASS DP=38;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:10,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2437 chr3 46507138 . C CATT 0 PASS DP=44;GPV=1;SPV=0.035511;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2438 chr3 50281670 . A AT 0 PASS DP=23;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2439 chr3 52718472 . CAA C 0 PASS DP=23;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:3,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2440 chr3 53221115 . CTTTTT C 0 PASS DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:3,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2441 chr3 54060178 . C CA 0 PASS DP=28;GPV=1;SPV=0.0070234;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:3,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2442 chr3 54226312 . C CTT 0 PASS DP=18;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2443 chr3 55222209 . G T 0 PASS DP=60;GPV=1;SPV=0.032887;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:7,4:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2444 chr3 55675960 . G A 0 PASS DP=41;GPV=1;SPV=0.0014155;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2445 chr3 57054643 . AT A 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2446 chr3 57427113 . ATATT A 0 PASS DP=39;GPV=1;SPV=0.0052761;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:6,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2447 chr3 57754987 . C CTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.037959;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:7,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2448 chr3 58003748 . C A 0 PASS DP=42;GPV=1;SPV=0.015516;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2449 chr3 60895665 . CCTTTCTTTCTTTCTTTCTTT C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:0,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2450 chr3 61900879 . T C 0 PASS DP=53;GPV=1;SPV=9.0511e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,8:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2451 chr3 62926096 . GAA G 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:14,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2452 chr3 63112336 . T A 0 PASS DP=69;GPV=1;SPV=9.0035e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:11,6:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2453 chr3 64451256 . C CAGAGAGAGAG 0 PASS DP=24;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,6:2,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2454 chr3 64670139 . A T 0 PASS DP=48;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,4:4,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2455 chr3 65132927 . GA G 0 PASS DP=33;GPV=1;SPV=0.28173;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,4:4,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2456 chr3 65346987 . T A 0 PASS DP=73;GPV=1;SPV=7.1534e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:11,9:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2457 chr3 67350128 . G GTTTT 0 PASS DP=52;GPV=1;SPV=0.00056247;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:8,9:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2458 chr3 68021185 . C CAA 0 PASS DP=28;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:7,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2459 chr3 68545006 . C T 0 PASS DP=50;GPV=1;SPV=0.0007761;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2460 chr3 70336814 . T TTGTG 0 PASS DP=33;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:3,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2461 chr3 73203639 . TA T 0 PASS DP=61;GPV=1;SPV=0.03385;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:10,2:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2462 chr3 74391557 . CT C 0 PASS DP=30;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:5,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2463 chr3 74711393 . C T 0 PASS DP=48;GPV=1;SPV=0.0012182;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:13,3:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2464 chr3 75446337 . C T 0 PASS DP=40;GPV=1;SPV=0.079329;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:8,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2465 chr3 75646619 . G A 0 PASS DP=236;GPV=1;SPV=0.020742;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:109,16:54,7:55,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2466 chr3 75825024 . G A 0 PASS DP=151;GPV=1;SPV=0.042449;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:54,10:33,1:21,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2467 chr3 76427003 . A G 0 PASS DP=59;GPV=1;SPV=0.0039305;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2468 chr3 77039673 . T A 0 PASS DP=63;GPV=1;SPV=3.0271e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,19:6,4:9,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2469 chr3 77135567 . AT A 0 PASS DP=49;GPV=1;SPV=0.00070906;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2470 chr3 77323048 . ATATAATATAT A 0 PASS DP=69;GPV=1;SPV=0.068138;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:19,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2471 chr3 78251357 . C T 0 PASS DP=65;GPV=1;SPV=0.0010255;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,3:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2472 chr3 78310783 . GA G 0 PASS DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:12,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2473 chr3 78311905 . CA C 0 PASS DP=41;GPV=1;SPV=0.0034481;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2474 chr3 78941630 . C T 0 PASS DP=53;GPV=1;SPV=0.000461;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:4,4:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2475 chr3 79519628 . C CAAA 0 PASS DP=23;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2476 chr3 79675075 . A T 0 PASS DP=60;GPV=1;SPV=0.095104;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2477 chr3 79675076 . T A 0 PASS DP=56;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2478 chr3 80594472 . G A 0 PASS DP=69;GPV=1;SPV=9.9796e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,5:6,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2479 chr3 82214511 . CGT C 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2480 chr3 82915520 . A AAT 0 PASS DP=25;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2481 chr3 83084765 . CTT C 0 PASS DP=41;GPV=1;SPV=0.00081261;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:7,8:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2482 chr3 83418140 . G A 0 PASS DP=60;GPV=1;SPV=0.00011093;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:10,6:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2483 chr3 83907471 . ATTTTT A 0 PASS DP=26;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:1,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2484 chr3 83919255 . AT A 0 PASS DP=43;GPV=1;SPV=0.043286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2485 chr3 84517268 . TTATATATATATATATATATATATATATA T 0 PASS DP=20;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:2,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2486 chr3 84949434 . G C 0 PASS DP=41;GPV=1;SPV=0.012068;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2487 chr3 85269986 . A T 0 PASS DP=60;GPV=1;SPV=0.00021136;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,7:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2488 chr3 85515617 . A G 0 PASS DP=33;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2489 chr3 85651984 . C CTTTTTTTTTTT 0 PASS DP=34;GPV=1;SPV=0.025795;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:8,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2490 chr3 89136384 . G GA 0 PASS DP=20;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:2,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2491 chr3 89316505 . A AATAT 0 PASS DP=20;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:2,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2492 chr3 89411165 . CT C 0 PASS DP=50;GPV=1;SPV=0.0040439;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2493 chr3 89778644 . GTT G 0 PASS DP=29;GPV=1;SPV=0.07827;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:10,3:7,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2494 chr3 90555751 . G A 0 PASS DP=38;GPV=1;SPV=0.0059828;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,1:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2495 chr3 90795678 . A G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2496 chr3 90795679 . G A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2497 chr3 90796078 . C T 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2498 chr3 90798071 . G T 0 PASS DP=777;GPV=1;SPV=0.014721;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:366:321,42:193,22:128,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2499 chr3 90806513 . G T 0 PASS DP=37;GPV=1;SPV=0.16089;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:17,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2500 chr3 90806570 . G T 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2501 chr3 90824580 . G T 0 PASS DP=76;GPV=1;SPV=0.071233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:36,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2502 chr3 90880190 . C T 0 PASS DP=130;GPV=1;SPV=0.03135;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:47,13:32,10:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2503 chr3 90892203 . G T 0 PASS DP=24;GPV=1;SPV=0.0059289;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2504 chr3 90946611 . A T 0 PASS DP=80;GPV=1;SPV=0.046434;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:6,1:27,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2505 chr3 90979496 . A G 0 PASS DP=62;GPV=1;SPV=0.042576;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:1,0:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2506 chr3 91022659 . C A 0 PASS DP=103;GPV=1;SPV=0.047794;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:3,2:33,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2507 chr3 91029637 . A G 0 PASS DP=138;GPV=1;SPV=0.038605;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:54,9:45,6:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2508 chr3 91063281 . C T 0 PASS DP=24;GPV=1;SPV=0.10145;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2509 chr3 91091786 . G T 0 PASS DP=121;GPV=1;SPV=0.008448;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:6,4:44,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2510 chr3 91141897 . T A 0 PASS DP=30;GPV=1;SPV=0.0056194;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:1,1:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2511 chr3 91177837 . T G 0 PASS DP=253;GPV=1;SPV=0.015911;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:94,13:89,12:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2512 chr3 91205533 . C T 0 PASS DP=85;GPV=1;SPV=0.029092;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:0,0:32,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2513 chr3 91218372 . T C 0 PASS DP=72;GPV=1;SPV=0.064197;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:6,1:27,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2514 chr3 93591170 . G C 0 PASS DP=224;GPV=1;SPV=0.013747;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:104,13:100,12:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2515 chr3 93591186 . CT C 0 PASS DP=241;GPV=1;SPV=0.028852;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:116,14:112,13:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2516 chr3 94936374 . C A 0 PASS DP=49;GPV=1;SPV=0.0011874;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:7,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2517 chr3 95784347 . A G 0 PASS DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:5,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2518 chr3 96171183 . GA G 0 PASS DP=62;GPV=1;SPV=0.026257;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:14,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2519 chr3 96518048 . T A 0 PASS DP=69;GPV=1;SPV=0.00021015;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:12,7:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2520 chr3 96983705 . T C 0 PASS DP=47;GPV=1;SPV=0.01412;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:8,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2521 chr3 97879569 . C T 0 PASS DP=59;GPV=1;SPV=1.6767e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,9:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2522 chr3 98427377 . TGTGAGA T 0 PASS DP=27;GPV=1;SPV=0.076651;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:9,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2523 chr3 100854188 . T TA 0 PASS DP=48;GPV=1;SPV=0.012535;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:10,1:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2524 chr3 101431508 . CT C 0 PASS DP=21;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2525 chr3 101440054 . A G 0 PASS DP=59;GPV=1;SPV=0.020048;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:12,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2526 chr3 101930935 . A C 0 PASS DP=57;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,4:7,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2527 chr3 103975233 . CA C 0 PASS DP=44;GPV=1;SPV=0.00013031;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2528 chr3 106534734 . C A 0 PASS DP=66;GPV=1;SPV=0.0013735;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:12,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2529 chr3 106542761 . TA T 0 PASS DP=55;GPV=1;SPV=0.00026263;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2530 chr3 106775348 . T C 0 PASS DP=72;GPV=1;SPV=0.057257;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2531 chr3 106775349 . G A 0 PASS DP=79;GPV=1;SPV=0.029196;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:18,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2532 chr3 108173766 . CTGTG C 0 PASS DP=37;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,8:7,4:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2533 chr3 108958612 . T A 0 PASS DP=61;GPV=1;SPV=5.7534e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:11,8:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2534 chr3 109529342 . G GT 0 PASS DP=38;GPV=1;SPV=0.0059828;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:2,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2535 chr3 109529360 . G C 0 PASS DP=42;GPV=1;SPV=0.0052475;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2536 chr3 109963081 . GT G 0 PASS DP=33;GPV=1;SPV=0.011174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2537 chr3 110129439 . G A 0 PASS DP=51;GPV=1;SPV=0.00017742;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,7:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2538 chr3 112261530 . A G 0 PASS DP=72;GPV=1;SPV=9.4663e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:7,6:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2539 chr3 113826339 . TACAC T 0 PASS DP=53;GPV=1;SPV=0.0011989;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,10:7,8:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2540 chr3 113935487 . AAT A 0 PASS DP=42;GPV=1;SPV=0.033476;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,6:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2541 chr3 115698281 . AAATATAAT A 0 PASS DP=17;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2542 chr3 115698297 . T A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2543 chr3 115736864 . C CT 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2544 chr3 115895057 . A G 0 PASS DP=53;GPV=1;SPV=0.00029504;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,3:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2545 chr3 116119672 . T C 0 PASS DP=49;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,6:9,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2546 chr3 116350967 . G A 0 PASS DP=43;GPV=1;SPV=0.00043396;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:6,6:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2547 chr3 117315395 . C T 0 PASS DP=52;GPV=1;SPV=0.14505;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:21,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2548 chr3 117979641 . G A 0 PASS DP=65;GPV=1;SPV=2.2822e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:14,7:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2549 chr3 118392849 . A T 0 PASS DP=61;GPV=1;SPV=0.008555;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:13,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2550 chr3 120118602 . TAAAAA T 0 PASS DP=30;GPV=1;SPV=0.28173;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,4:5,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2551 chr3 123183268 . TTC T 0 PASS DP=29;GPV=1;SPV=0.032284;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,1:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2552 chr3 123694091 . G C 0 PASS DP=50;GPV=1;SPV=0.0029206;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2553 chr3 124597073 . A C 0 PASS DP=55;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:1,3:0,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2554 chr3 125030879 . T C 0 PASS DP=58;GPV=1;SPV=2.7719e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,13:7,4:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2555 chr3 125214652 . CA C 0 PASS DP=36;GPV=1;SPV=0.00023483;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,15:5,9:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2556 chr3 125712093 . C T 0 PASS DP=69;GPV=1;SPV=0.00094346;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:14,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2557 chr3 126891525 . C T 0 PASS DP=70;GPV=1;SPV=0.00059303;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:14,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2558 chr3 127244996 . CA C 0 PASS DP=29;GPV=1;SPV=0.018691;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:7,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2559 chr3 130001138 . C T 0 PASS DP=80;GPV=1;SPV=0.046672;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:21,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2560 chr3 130639103 . G A 0 PASS DP=65;GPV=1;SPV=4.4247e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,18:9,10:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2561 chr3 130986903 . GT G 0 PASS DP=38;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,5:8,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2562 chr3 131615891 . T A 0 PASS DP=21;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,3:3,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2563 chr3 131631897 . C CTT 0 PASS DP=32;GPV=1;SPV=0.21557;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:10,2:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2564 chr3 133150342 . G GTTTTT 0 PASS DP=34;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:7,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2565 chr3 133449949 . AAGAGAG A 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2566 chr3 134289297 . A ACAAAAAC 0 PASS DP=50;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:5,3:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2567 chr3 134582164 . A C 0 PASS DP=48;GPV=1;SPV=0.00034194;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,3:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2568 chr3 135541930 . GTA G 0 PASS DP=46;GPV=1;SPV=0.018356;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,7:7,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2569 chr3 138050905 . G A 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2570 chr3 147343399 . CT C 0 PASS DP=28;GPV=1;SPV=0.024176;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2571 chr3 147860263 . G A 0 PASS DP=62;GPV=1;SPV=4.2249e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,5:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2572 chr3 148614914 . TGAGA T 0 PASS DP=41;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:6,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2573 chr3 148811068 . A ATCT 0 PASS DP=50;GPV=1;SPV=0.0041352;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:7,1:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2574 chr3 148811069 . C T 0 PASS DP=63;GPV=1;SPV=0.0004646;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:9,2:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2575 chr3 150723292 . TTCTTTCTTTTTCTTTCTTTC T 0 PASS DP=38;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,5:1,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2576 chr3 151174855 . C T 0 PASS DP=58;GPV=1;SPV=0.00016103;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:11,8:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2577 chr3 156590063 . T C 0 PASS DP=73;GPV=1;SPV=0.00020424;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:15,10:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2578 chr3 157005999 . AT A 0 PASS DP=57;GPV=1;SPV=0.013286;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:13,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2579 chr3 157071796 . A T 0 PASS DP=45;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:1,2:0,0:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2580 chr3 157304038 . T TATATATATATATATATATATAC 0 PASS DP=42;GPV=1;SPV=0.031941;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:7,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2581 chr3 157674912 . A ATTCTTTCT 0 PASS DP=41;GPV=1;SPV=0.0030816;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,8:1,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2582 chr3 159626255 . G T 0 PASS DP=32;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2583 chr3 160137036 . A C 0 PASS DP=48;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,4:10,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2584 chr3 167725256 . CAAAAAAGAAAAA C 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2585 chr3 168886414 . TAC T 0 PASS DP=25;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2586 chr3 171813199 . T A 0 PASS DP=58;GPV=1;SPV=0.00015824;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:9,5:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2587 chr3 172712727 . CCTCTCTCT C 0 PASS DP=40;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,6:5,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2588 chr3 173233574 . T A 0 PASS DP=35;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,6:6,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2589 chr3 174348015 . CAA C 0 PASS DP=35;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2590 chr3 174368155 . TAAA T 0 PASS DP=21;GPV=1;SPV=0.0085139;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:5,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2591 chr3 174703303 . CT C 0 PASS DP=39;GPV=1;SPV=0.0048875;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,5:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2592 chr3 175016670 . AT A 0 PASS DP=69;GPV=1;SPV=2.5614e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:13,5:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2593 chr3 175016675 . A T 0 PASS DP=63;GPV=1;SPV=0.0002841;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,5:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2594 chr3 175232234 . G GAAGAGGAAGAGGAAGAAGAAAGA 0 PASS DP=27;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:4,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2595 chr3 175384300 . T A 0 PASS DP=67;GPV=1;SPV=7.9253e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:7,4:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2596 chr3 177540989 . C T 0 PASS DP=43;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:4,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2597 chr3 177687164 . TTGTGTGTGTGTGTGTGTGTGTG T 0 PASS DP=23;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:4,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2598 chr3 178283385 . C CA 0 PASS DP=23;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2599 chr3 180444297 . CT C 0 PASS DP=54;GPV=1;SPV=0.0012555;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:13,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2600 chr3 180755577 . C CT 0 PASS DP=40;GPV=1;SPV=0.025784;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2601 chr3 180864487 . C CT 0 PASS DP=22;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,6:1,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2602 chr3 181447069 . CTT C 0 PASS DP=36;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:4,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2603 chr3 183657107 . C G 0 PASS DP=60;GPV=1;SPV=0.095104;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:21,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2604 chr3 183725041 . C CT 0 PASS DP=23;GPV=1;SPV=0.0013736;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,5:0,3:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2605 chr3 184617395 . GAA G 0 PASS DP=20;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2606 chr3 184658008 . C CT 0 PASS DP=30;GPV=1;SPV=0.0054348;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:5,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2607 chr3 186259095 . G A 0 PASS DP=69;GPV=1;SPV=0.015379;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,5:7,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2608 chr3 187137817 . G C 0 PASS DP=43;GPV=1;SPV=0.00022958;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:5,9:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2609 chr3 187137821 . CA C 0 PASS DP=43;GPV=1;SPV=0.005394;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:5,8:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2610 chr3 187303546 . CTTTCTTTCTT C 0 PASS DP=24;GPV=1;SPV=0.019763;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2611 chr3 187434294 . C CAT 0 PASS DP=37;GPV=1;SPV=0.035819;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:6,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2612 chr3 187434387 . G A 0 PASS DP=48;GPV=1;SPV=0.037117;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:10,4:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2613 chr3 187597736 . T C 0 PASS DP=34;GPV=1;SPV=0.013999;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:3,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2614 chr3 191463020 . C CTTTCTTTCTT 0 PASS DP=21;GPV=1;SPV=0.27273;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:0,0:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2615 chr3 192656320 . CAGAG C 0 PASS DP=53;GPV=1;SPV=0.04724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,4:5,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2616 chr3 192788183 . G GT 0 PASS DP=19;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,3:1,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2617 chr3 193264511 . C CT 0 PASS DP=51;GPV=1;SPV=0.0083293;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:10,6:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2618 chr3 194011714 . CA C 0 PASS DP=31;GPV=1;SPV=0.012914;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:7,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2619 chr3 194866663 . GTATATATATA G 0 PASS DP=28;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:7,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2620 chr3 195728090 . T C 0 PASS DP=119;GPV=1;SPV=0.042229;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:52,16:25,9:27,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2621 chr3 195746888 . G T 0 PASS DP=115;GPV=1;SPV=0.039792;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:48,10:24,7:24,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2622 chr3 195983454 . A C 0 PASS DP=90;GPV=1;SPV=0.028926;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:6,1:39,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2623 chr3 197623223 . C T 0 PASS DP=57;GPV=1;SPV=0.03191;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,6:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2624 chr3 197827646 . G A 0 PASS DP=64;GPV=1;SPV=1.711e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:10,6:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2625 chr4 16009 . G A 0 PASS DP=70;GPV=1;SPV=0.021504;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:19,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2626 chr4 41218 . T C 0 PASS DP=228;GPV=1;SPV=0.015504;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:98,13:43,6:55,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2627 chr4 45414 . A C 0 PASS DP=304;GPV=1;SPV=0.028326;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:137,21:60,7:77,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2628 chr4 49031 . G C 0 PASS DP=194;GPV=1;SPV=0.040434;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:84,13:43,7:41,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2629 chr4 49132 . G C 0 PASS DP=182;GPV=1;SPV=0.046495;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:76,12:40,5:36,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2630 chr4 59576 . A G 0 PASS DP=266;GPV=1;SPV=0.018653;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:116,18:64,7:52,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2631 chr4 62314 . G C 0 PASS DP=250;GPV=1;SPV=0.0081263;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:97,17:40,12:57,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2632 chr4 1283150 . C T 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2633 chr4 1296586 . G T 0 PASS DP=41;GPV=1;SPV=0.027154;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:7,1:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2634 chr4 1860669 . A G 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2635 chr4 3580444 . T TCATCCATCCATCCATC 0 PASS DP=34;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:6,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2636 chr4 4010099 . A ATTTTTT 0 PASS DP=40;GPV=1;SPV=0.0032628;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2637 chr4 5441527 . T A 0 PASS DP=51;GPV=1;SPV=0.0079024;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,7:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2638 chr4 8409607 . T TGC 0 PASS DP=37;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2639 chr4 8626671 . G GT 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:16,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2640 chr4 10610050 . T G 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2641 chr4 10786561 . G GT 0 PASS DP=25;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2642 chr4 11305451 . TAAAA T 0 PASS DP=18;GPV=1;SPV=0.013369;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2643 chr4 14012406 . C T 0 PASS DP=29;GPV=1;SPV=0.08867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2644 chr4 14471731 . T C 0 PASS DP=52;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2645 chr4 14548401 . C T 0 PASS DP=53;GPV=1;SPV=0.00017105;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2646 chr4 15722592 . A AT 0 PASS DP=37;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:10,7:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2647 chr4 17404560 . CAAA C 0 PASS DP=34;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:9,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2648 chr4 17448183 . CT C 0 PASS DP=22;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,7:2,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2649 chr4 17925890 . A C 0 PASS DP=37;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,3:0,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2650 chr4 18948670 . G A 0 PASS DP=57;GPV=1;SPV=0.0015903;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:12,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2651 chr4 19324347 . AT A 0 PASS DP=65;GPV=1;SPV=0.00012761;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,7:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2652 chr4 20211809 . A T 0 PASS DP=69;GPV=1;SPV=0.095143;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2653 chr4 22181677 . CATAG C 0 PASS DP=42;GPV=1;SPV=0.014502;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2654 chr4 22872559 . CA C 0 PASS DP=26;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:6,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2655 chr4 24122385 . A ATG 0 PASS DP=35;GPV=1;SPV=0.0046348;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2656 chr4 25046334 . TACACACAC T 0 PASS DP=35;GPV=1;SPV=0.008413;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,7:4,1:0,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2657 chr4 25453947 . A T 0 PASS DP=31;GPV=1;SPV=0.014049;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2658 chr4 25679119 . C T 0 PASS DP=54;GPV=1;SPV=0.011461;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:15,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2659 chr4 25808836 . G A 0 PASS DP=28;GPV=1;SPV=0.034921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2660 chr4 26244317 . A G 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2661 chr4 26590809 . T G 0 PASS DP=28;GPV=1;SPV=0.024176;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2662 chr4 27108120 . A G 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2663 chr4 27792425 . C CAA 0 PASS DP=27;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2664 chr4 27799164 . A C 0 PASS DP=70;GPV=1;SPV=0.00059303;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:12,7:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2665 chr4 29733016 . GTT G 0 PASS DP=76;GPV=1;SPV=0.040563;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:22,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2666 chr4 29965622 . A AT 0 PASS DP=45;GPV=1;SPV=0.00061478;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,7:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2667 chr4 32641732 . G A 0 PASS DP=37;GPV=1;SPV=1.8212e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,15:1,10:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2668 chr4 32671096 . AC A 0 PASS DP=40;GPV=1;SPV=0.0028593;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2669 chr4 32717008 . C CT 0 PASS DP=33;GPV=1;SPV=0.0029614;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:1,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2670 chr4 35152970 . AT A 0 PASS DP=30;GPV=1;SPV=0.01548;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,6:3,1:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2671 chr4 35233969 . G GTA 0 PASS DP=44;GPV=1;SPV=0.0010229;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,10:8,4:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2672 chr4 35312910 . G A 0 PASS DP=73;GPV=1;SPV=8.0398e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:11,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2673 chr4 35468056 . G T 0 PASS DP=49;GPV=1;SPV=0.022198;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:6,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2674 chr4 38087862 . AG A 0 PASS DP=26;GPV=1;SPV=0.011037;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:0,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2675 chr4 38438950 . G GA 0 PASS DP=43;GPV=1;SPV=0.021719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:8,6:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2676 chr4 38718049 . C T 0 PASS DP=68;GPV=1;SPV=1.974e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:11,10:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2677 chr4 39179952 . C G 0 PASS DP=63;GPV=1;SPV=3.8896e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:7,4:9,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2678 chr4 39789185 . G GA 0 PASS DP=47;GPV=1;SPV=0.0070165;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:8,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2679 chr4 40481486 . A T 0 PASS DP=21;GPV=1;SPV=0.0067079;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:0,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2680 chr4 41343610 . G T 0 PASS DP=49;GPV=1;SPV=0.00014652;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:7,7:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2681 chr4 42555146 . C CT 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2682 chr4 43503790 . T A 0 PASS DP=49;GPV=1;SPV=5.6363e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:4,6:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2683 chr4 43758095 . T C 0 PASS DP=36;GPV=1;SPV=0.0021846;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,10:3,5:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2684 chr4 43846701 . T C 0 PASS DP=27;GPV=1;SPV=0.00057502;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:3,15:3,7:0,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2685 chr4 44121593 . G C 0 PASS DP=58;GPV=1;SPV=5.8313e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,5:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2686 chr4 44349071 . G GCCA 0 PASS DP=43;GPV=1;SPV=0.00025277;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,3:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2687 chr4 44987638 . C T 0 PASS DP=60;GPV=1;SPV=0.027592;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:14,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2688 chr4 46100707 . G GA 0 PASS DP=24;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,7:1,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2689 chr4 48393386 . T TTGTGTG 0 PASS DP=34;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,7:3,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2690 chr4 48823432 . A T 0 PASS DP=51;GPV=1;SPV=0.001147;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2691 chr4 48943952 . TAA T 0 PASS DP=39;GPV=1;SPV=0.073823;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:6,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2692 chr4 49150033 . G C 0 PASS DP=32;GPV=1;SPV=0.042547;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2693 chr4 49158494 . C T 0 PASS DP=163;GPV=1;SPV=0.038593;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:77,14:40,7:37,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2694 chr4 49159235 . G A 0 PASS DP=187;GPV=1;SPV=0.024688;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:78,10:24,1:54,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2695 chr4 49184579 . A C 0 PASS DP=116;GPV=1;SPV=0.029498;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:24,6:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2696 chr4 49195425 . C T 0 PASS DP=112;GPV=1;SPV=0.013575;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:55,7:34,4:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2697 chr4 49226686 . C T 0 PASS DP=224;GPV=1;SPV=0.017843;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:82,17:46,14:36,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2698 chr4 49241359 . G A 0 PASS DP=150;GPV=1;SPV=0.013299;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:63,12:35,6:28,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2699 chr4 49241573 . G C 0 PASS DP=142;GPV=1;SPV=0.045618;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:51,13:21,9:30,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2700 chr4 49246982 . C T 0 PASS DP=143;GPV=1;SPV=0.0048956;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:60,12:25,10:35,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2701 chr4 49252716 . T A 0 PASS DP=206;GPV=1;SPV=0.011007;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:75,17:36,8:39,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2702 chr4 49261767 . T A 0 PASS DP=323;GPV=1;SPV=0.028096;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:139,19:66,6:73,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2703 chr4 49263781 . A C 0 PASS DP=236;GPV=1;SPV=0.0034993;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:107,13:59,6:48,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2704 chr4 49273073 . A C 0 PASS DP=640;GPV=1;SPV=0.018305;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:295:254,41:130,20:124,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2705 chr4 49490706 . G A 0 PASS DP=483;GPV=1;SPV=0.022536;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:244:211,33:118,15:93,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2706 chr4 49497096 . G GAT 0 PASS DP=92;GPV=1;SPV=0.038776;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:22,4:22,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2707 chr4 49520640 . TAGGGTTGGATTAGTGTGAGGGTG T 0 PASS DP=37;GPV=1;SPV=0.22636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:21,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2708 chr4 49543512 . C T 0 PASS DP=353;GPV=1;SPV=0.0083518;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:152,17:34,6:118,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2709 chr4 49585249 . G C 0 PASS DP=56;GPV=1;SPV=0.0048935;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:11,8:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2710 chr4 49612408 . G T 0 PASS DP=86;GPV=1;SPV=0.031714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:14,10:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2711 chr4 49714997 . C T 0 PASS DP=118;GPV=1;SPV=0.0051851;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:47,9:33,1:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2712 chr4 50007021 . G A 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:23,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2713 chr4 50273970 . G A 0 PASS DP=79;GPV=1;SPV=0.037745;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:17,2:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2714 chr4 50413448 . G T 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2715 chr4 50463635 . G A 0 PASS DP=48;GPV=1;SPV=0.045508;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:4,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2716 chr4 50481840 . T C 0 PASS DP=61;GPV=1;SPV=0.030747;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:2,1:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2717 chr4 50723811 . C T 0 PASS DP=153;GPV=1;SPV=0.031484;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:52,14:23,10:29,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2718 chr4 51016099 . C A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2719 chr4 51292859 . A T 0 PASS DP=141;GPV=1;SPV=0.0074367;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:50,16:26,6:24,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2720 chr4 52528380 . A G 0 PASS DP=35;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,3:2,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2721 chr4 52835837 . TA T 0 PASS DP=40;GPV=1;SPV=0.0062713;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:2,6:1,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2722 chr4 54654426 . G A 0 PASS DP=67;GPV=1;SPV=0.068312;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2723 chr4 55170346 . TG T 0 PASS DP=46;GPV=1;SPV=0.058895;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2724 chr4 55375916 . T G 0 PASS DP=59;GPV=1;SPV=0.33939;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,3:5,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2725 chr4 55604679 . A ATTTT 0 PASS DP=20;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:2,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2726 chr4 55761557 . T TATATATATACAC 0 PASS DP=43;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,7:9,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2727 chr4 56609050 . CT C 0 PASS DP=35;GPV=1;SPV=0.01473;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,4:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2728 chr4 56721176 . A T 0 PASS DP=36;GPV=1;SPV=0.32967;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,4:6,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2729 chr4 56750279 . G A 0 PASS DP=37;GPV=1;SPV=0.038248;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,5:2,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2730 chr4 56898314 . A C 0 PASS DP=32;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2731 chr4 57672617 . T A 0 PASS DP=51;GPV=1;SPV=0.0034711;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:10,7:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2732 chr4 59362900 . G A 0 PASS DP=59;GPV=1;SPV=2.7606e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:10,4:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2733 chr4 59604543 . CCTCTCT C 0 PASS DP=30;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:2,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2734 chr4 61596005 . T C 0 PASS DP=64;GPV=1;SPV=4.8434e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:7,9:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2735 chr4 63262848 . A C 0 PASS DP=52;GPV=1;SPV=0.002076;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:13,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2736 chr4 63539399 . A T 0 PASS DP=52;GPV=1;SPV=0.0027222;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:11,7:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2737 chr4 64460069 . A G 0 PASS DP=61;GPV=1;SPV=0.00012961;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:10,8:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2738 chr4 64669447 . G A 0 PASS DP=34;GPV=1;SPV=0.014275;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2739 chr4 65229314 . G GA 0 PASS DP=61;GPV=1;SPV=0.0054264;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:16,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2740 chr4 66352614 . C T 0 PASS DP=58;GPV=1;SPV=9.6988e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:10,6:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2741 chr4 66786246 . A G 0 PASS DP=31;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2742 chr4 68764743 . A T 0 PASS DP=63;GPV=1;SPV=5.4752e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,5:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2743 chr4 68870508 . A G 0 PASS DP=21;GPV=1;SPV=0.012384;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2744 chr4 70100946 . G GA 0 PASS DP=39;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,8:7,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2745 chr4 71577684 . CA C 0 PASS DP=44;GPV=1;SPV=0.007849;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,5:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2746 chr4 72532492 . C T 0 PASS DP=64;GPV=1;SPV=0.1733;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,4:7,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2747 chr4 73318657 . C CTCTT 0 PASS DP=38;GPV=1;SPV=0.043422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:1,2:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2748 chr4 73785611 . C CA 0 PASS DP=38;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,9:2,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2749 chr4 73861691 . A C 0 PASS DP=39;GPV=1;SPV=0.0041113;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:8,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2750 chr4 76316900 . C CA 0 PASS DP=23;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,6:3,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2751 chr4 76424292 . T TA 0 PASS DP=31;GPV=1;SPV=0.0073297;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2752 chr4 77103258 . CATATAT C 0 PASS DP=30;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:3,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2753 chr4 77753902 . A T 0 PASS DP=46;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:5,3:4,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2754 chr4 78040335 . T C 0 PASS DP=57;GPV=1;SPV=0.00079368;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:12,7:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2755 chr4 78081067 . C T 0 PASS DP=63;GPV=1;SPV=3.5057e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:4,9:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2756 chr4 78968710 . CTTTT C 0 PASS DP=26;GPV=1;SPV=0.12821;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,2:3,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2757 chr4 81307689 . C CA 0 PASS DP=33;GPV=1;SPV=0.0024472;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:7,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2758 chr4 81533599 . ATTTTT A 0 PASS DP=26;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2759 chr4 82702130 . CTTT C 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2760 chr4 82809422 . T A 0 PASS DP=24;GPV=1;SPV=0.0060573;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:0,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2761 chr4 82947233 . A T 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:4,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2762 chr4 83182848 . A G 0 PASS DP=37;GPV=1;SPV=0.016795;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,1:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2763 chr4 83634132 . CA C 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2764 chr4 83893982 . CT C 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2765 chr4 84078144 . T C 0 PASS DP=45;GPV=1;SPV=0.034789;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2766 chr4 87542730 . TCTTTCTTTCTTTC T 0 PASS DP=40;GPV=1;SPV=0.037328;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:4,1:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2767 chr4 87616352 . CAGCAATGAA C 0 PASS DP=35;GPV=1;SPV=0.1039;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:11,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2768 chr4 87774476 . T C 0 PASS DP=72;GPV=1;SPV=0.012656;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:19,4:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2769 chr4 90083296 . C CA 0 PASS DP=35;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:6,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2770 chr4 90854409 . G T 0 PASS DP=61;GPV=1;SPV=0.001818;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2771 chr4 90942828 . G C 0 PASS DP=55;GPV=1;SPV=0.00011829;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:7,4:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2772 chr4 91041659 . A G 0 PASS DP=59;GPV=1;SPV=0.00013428;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,3:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2773 chr4 92336954 . G GTT 0 PASS DP=27;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2774 chr4 92588678 . CAAA C 0 PASS DP=28;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2775 chr4 92911766 . C T 0 PASS DP=42;GPV=1;SPV=0.00012227;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:7,6:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2776 chr4 95047250 . C A 0 PASS DP=61;GPV=1;SPV=0.00039828;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:7,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2777 chr4 96629329 . T TATTA 0 PASS DP=53;GPV=1;SPV=3.2748e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:4,4:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2778 chr4 97072239 . TAA T 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2779 chr4 97589537 . T A 0 PASS DP=53;GPV=1;SPV=1.2409e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:11,7:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2780 chr4 97793370 . T TAC 0 PASS DP=38;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2781 chr4 98437791 . C CA 0 PASS DP=49;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:10,7:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2782 chr4 99879799 . C CCTA 0 PASS DP=51;GPV=1;SPV=0.025971;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2783 chr4 99879808 . C T 0 PASS DP=44;GPV=1;SPV=0.014276;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2784 chr4 100378940 . TTTTCC T 0 PASS DP=34;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,7:0,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2785 chr4 100749881 . T A 0 PASS DP=57;GPV=1;SPV=2.4158e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:11,6:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2786 chr4 100794963 . C CTTTT 0 PASS DP=27;GPV=1;SPV=0.043956;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,9:0,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2787 chr4 101582055 . G GAT 0 PASS DP=38;GPV=1;SPV=0.037397;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:6,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2788 chr4 101748749 . A ATG 0 PASS DP=54;GPV=1;SPV=0.02825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:8,4:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2789 chr4 101748762 . C G 0 PASS DP=48;GPV=1;SPV=0.024122;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2790 chr4 104853700 . G A 0 PASS DP=83;GPV=1;SPV=2.3091e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:13,10:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2791 chr4 105406114 . C CAAAA 0 PASS DP=27;GPV=1;SPV=0.0028986;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:5,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2792 chr4 108247355 . CATATATATATATATATAT C 0 PASS DP=33;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:6,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2793 chr4 111402103 . TA T 0 PASS DP=63;GPV=1;SPV=0.0021401;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:7,5:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2794 chr4 112204072 . C CT 0 PASS DP=34;GPV=1;SPV=0.0011989;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:4,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2795 chr4 114791514 . C CA 0 PASS DP=43;GPV=1;SPV=0.022078;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2796 chr4 115463073 . A G 0 PASS DP=56;GPV=1;SPV=1.7718e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:14,20:9,13:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2797 chr4 116204797 . G T 0 PASS DP=35;GPV=1;SPV=0.02914;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2798 chr4 118563314 . G GT 0 PASS DP=39;GPV=1;SPV=0.023838;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2799 chr4 119769356 . G A 0 PASS DP=58;GPV=1;SPV=0.0012565;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2800 chr4 120224633 . A C 0 PASS DP=32;GPV=1;SPV=0.00058257;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,12:3,7:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2801 chr4 120489546 . G A 0 PASS DP=53;GPV=1;SPV=0.0048426;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2802 chr4 120644181 . G C 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2803 chr4 123373069 . T TAAAGAAAG 0 PASS DP=41;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:3,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2804 chr4 125249246 . C T 0 PASS DP=64;GPV=1;SPV=2.8879e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2805 chr4 128563468 . GTT G 0 PASS DP=40;GPV=1;SPV=0.036526;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2806 chr4 128731300 . G A 0 PASS DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2807 chr4 130360918 . G A 0 PASS DP=64;GPV=1;SPV=7.3464e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:5,4:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2808 chr4 130720455 . G A 0 PASS DP=61;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:11,7:7,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2809 chr4 131674287 . G A 0 PASS DP=62;GPV=1;SPV=0.0053469;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:15,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2810 chr4 131745978 . C T 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2811 chr4 132042003 . G A 0 PASS DP=51;GPV=1;SPV=2.4323e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:5,10:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2812 chr4 132205992 . A T 0 PASS DP=60;GPV=1;SPV=0.00068948;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:15,6:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2813 chr4 132438919 . A G 0 PASS DP=51;GPV=1;SPV=0.0086626;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2814 chr4 133731278 . CAA C 0 PASS DP=39;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:7,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2815 chr4 134669019 . C G 0 PASS DP=28;GPV=1;SPV=0.016117;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2816 chr4 134774594 . T A 0 PASS DP=70;GPV=1;SPV=2.9466e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:11,9:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2817 chr4 135597776 . C A 0 PASS DP=69;GPV=1;SPV=0.0014466;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,5:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2818 chr4 136057133 . C CGT 0 PASS DP=47;GPV=1;SPV=0.011574;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,9:10,3:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2819 chr4 139572216 . CTTTTTTTT C 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2820 chr4 140901671 . A G 0 PASS DP=61;GPV=1;SPV=0.0016174;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:10,4:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2821 chr4 141101739 . C T 0 PASS DP=63;GPV=1;SPV=3.2414e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:13,5:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2822 chr4 141956697 . A G 0 PASS DP=59;GPV=1;SPV=0.028465;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:10,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2823 chr4 142579879 . G GTAGGTAGATAGA 0 PASS DP=46;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:9,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2824 chr4 143880094 . T G 0 PASS DP=62;GPV=1;SPV=0.026257;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:11,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2825 chr4 144158703 . A ATTTTTT 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2826 chr4 144473366 . C CA 0 PASS DP=41;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,8:9,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2827 chr4 145706808 . A AT 0 PASS DP=44;GPV=1;SPV=0.048875;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2828 chr4 145864420 . C CA 0 PASS DP=32;GPV=1;SPV=0.025986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:8,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2829 chr4 149102144 . CTT C 0 PASS DP=27;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:11,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2830 chr4 150148381 . CT C 0 PASS DP=32;GPV=1;SPV=0.032805;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:4,8:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2831 chr4 150228159 . C T 0 PASS DP=58;GPV=1;SPV=0.00038673;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:2,3:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2832 chr4 150818532 . C CTG 0 PASS DP=63;GPV=1;SPV=0.023594;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,6:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2833 chr4 151074116 . G A 0 PASS DP=55;GPV=1;SPV=0.00012852;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2834 chr4 151328963 . CAA C 0 PASS DP=25;GPV=1;SPV=0.0037445;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2835 chr4 151697953 . GTATATATA G 0 PASS DP=35;GPV=1;SPV=0.12821;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:0,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2836 chr4 151811965 . CT C 0 PASS DP=19;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:1,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2837 chr4 155015980 . T C 0 PASS DP=44;GPV=1;SPV=0.019656;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:8,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2838 chr4 156851930 . CAAAAAAA C 0 PASS DP=31;GPV=1;SPV=0.0055469;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2839 chr4 157277890 . GTA G 0 PASS DP=49;GPV=1;SPV=0.050152;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2840 chr4 160193329 . C T 0 PASS DP=42;GPV=1;SPV=0.0012507;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:3,5:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2841 chr4 163883259 . G A 0 PASS DP=47;GPV=1;SPV=0.027778;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:0,2:0,0:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2842 chr4 163883260 . A T 0 PASS DP=45;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:0,2:0,0:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2843 chr4 164754450 . ACT A 0 PASS DP=45;GPV=1;SPV=0.043486;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2844 chr4 164854493 . AT A 0 PASS DP=39;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:7,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2845 chr4 165254553 . C G 0 PASS DP=65;GPV=1;SPV=0.036638;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2846 chr4 165289509 . G GT 0 PASS DP=31;GPV=1;SPV=0.0016314;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2847 chr4 166666435 . T C 0 PASS DP=40;GPV=1;SPV=0.051138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2848 chr4 167111783 . G C 0 PASS DP=53;GPV=1;SPV=3.2263e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:8,5:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2849 chr4 168386575 . G GAA 0 PASS DP=43;GPV=1;SPV=0.0060713;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:10,11:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2850 chr4 169787292 . A T 0 PASS DP=68;GPV=1;SPV=0.040231;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:16,4:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2851 chr4 169985113 . TATCTATCAATC T 0 PASS DP=43;GPV=1;SPV=0.025825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2852 chr4 175484848 . A C 0 PASS DP=38;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2853 chr4 175706655 . G A 0 PASS DP=58;GPV=1;SPV=1.0101e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:8,8:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2854 chr4 176056801 . C CAATA 0 PASS DP=54;GPV=1;SPV=0.028555;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:5,2:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2855 chr4 176204540 . CT C 0 PASS DP=39;GPV=1;SPV=0.022727;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:6,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2856 chr4 176500213 . T TCACACA 0 PASS DP=39;GPV=1;SPV=0.024154;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2857 chr4 176570483 . C CTCTT 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2858 chr4 176617441 . T TATTCCCATTTTAC 0 PASS DP=38;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,6:4,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2859 chr4 176617455 . C CT 0 PASS DP=37;GPV=1;SPV=0.040085;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,5:4,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2860 chr4 177002018 . CTGTG C 0 PASS DP=45;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:1,4:0,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2861 chr4 177410391 . AT A 0 PASS DP=43;GPV=1;SPV=0.010741;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:14,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2862 chr4 178835888 . AT A 0 PASS DP=42;GPV=1;SPV=0.012829;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:11,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2863 chr4 179560034 . T TAAAAAA 0 PASS DP=38;GPV=1;SPV=0.00053043;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,14:5,9:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2864 chr4 179974374 . CT C 0 PASS DP=27;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2865 chr4 180011122 . G A 0 PASS DP=57;GPV=1;SPV=4.702e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:12,8:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2866 chr4 181253700 . A G 0 PASS DP=49;GPV=1;SPV=0.045508;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:12,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2867 chr4 181789218 . A ATTTATTTTAT 0 PASS DP=72;GPV=1;SPV=0.044727;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:11,4:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2868 chr4 182125139 . T C 0 PASS DP=28;GPV=1;SPV=0.087179;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2869 chr4 182223783 . C CAAA 0 PASS DP=29;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2870 chr4 183374863 . AAT A 0 PASS DP=45;GPV=1;SPV=0.05832;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2871 chr4 184005474 . A AAAAAAC 0 PASS DP=53;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2872 chr4 184814290 . C CA 0 PASS DP=39;GPV=1;SPV=0.025944;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:6,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2873 chr4 185453543 . CT C 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2874 chr4 186476636 . C G 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2875 chr4 187427448 . G T 0 PASS DP=58;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:4,2:1,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2876 chr4 187939899 . A T 0 PASS DP=46;GPV=1;SPV=0.00057914;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2877 chr4 187991036 . T TAAAC 0 PASS DP=46;GPV=1;SPV=0.035323;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,3:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2878 chr4 187996987 . GGGAGCATGGAGCATGGAGCGTGGAGCGT G 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2879 chr4 188270847 . G C 0 PASS DP=71;GPV=1;SPV=0.0015991;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,10:10,9:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2880 chr4 188797423 . G A 0 PASS DP=76;GPV=1;SPV=1.513e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:9,9:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2881 chr4 188801720 . T TTTTATTTATTTA 0 PASS DP=48;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,9:7,7:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2882 chr4 189686678 . A T 0 PASS DP=43;GPV=1;SPV=0.042825;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:9,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2883 chr4 189691776 . G A 0 PASS DP=75;GPV=1;SPV=0.042478;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:14,1:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2884 chr4 189787161 . A C 0 PASS DP=59;GPV=1;SPV=0.018404;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,5:4,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2885 chr4 189808046 . CACACACACACACACACATACAT C 0 PASS DP=39;GPV=1;SPV=0.13236;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:15,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2886 chr4 190053653 . T A 0 PASS DP=198;GPV=1;SPV=0.0093712;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:83,14:32,5:51,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2887 chr5 710573 . C CTG 0 PASS DP=63;GPV=1;SPV=0.10169;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:18,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2888 chr5 1076411 . C CATCCTGTGACCA 0 PASS DP=52;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,9:6,3:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2889 chr5 2580934 . T C 0 PASS DP=28;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:0,0:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2890 chr5 2907358 . A C 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2891 chr5 4107442 . G GA 0 PASS DP=53;GPV=1;SPV=0.032072;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:18,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2892 chr5 4258666 . C CT 0 PASS DP=25;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:5,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2893 chr5 4326862 . C CCT 0 PASS DP=37;GPV=1;SPV=0.040404;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:5,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2894 chr5 4479231 . G A 0 PASS DP=51;GPV=1;SPV=0.00014249;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:6,6:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2895 chr5 4825300 . T A 0 PASS DP=48;GPV=1;SPV=5.9839e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:7,4:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2896 chr5 4912782 . G A 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2897 chr5 5908876 . CTATTTTATTTTATTTTATTT C 0 PASS DP=39;GPV=1;SPV=0.038556;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2898 chr5 5925042 . A G 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2899 chr5 6751444 . G GCTTTTCAC 0 PASS DP=39;GPV=1;SPV=0.036102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2900 chr5 7207044 . T TTCC 0 PASS DP=26;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2901 chr5 11081086 . A ACACACACACACACACACACT 0 PASS DP=43;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,4:14,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2902 chr5 11441368 . ATTT A 0 PASS DP=24;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2903 chr5 12166540 . A AAAAG 0 PASS DP=27;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:8,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2904 chr5 12348504 . GT G 0 PASS DP=31;GPV=1;SPV=0.025708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2905 chr5 13921475 . TCA T 0 PASS DP=40;GPV=1;SPV=0.027424;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:5,1:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2906 chr5 13921481 . A T 0 PASS DP=30;GPV=1;SPV=0.0026248;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,8:1,2:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2907 chr5 15255713 . G GA 0 PASS DP=54;GPV=1;SPV=0.0013843;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:14,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2908 chr5 15993627 . C T 0 PASS DP=84;GPV=1;SPV=1.6656e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:19,6:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2909 chr5 16905836 . C CA 0 PASS DP=66;GPV=1;SPV=4.15e-06;SS=2;SSC=53;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:8,5:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2910 chr5 16912802 . G GCA 0 PASS DP=37;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:7,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2911 chr5 16948192 . A ATT 0 PASS DP=42;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,10:2,3:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2912 chr5 17048058 . A T 0 PASS DP=56;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:32:0,4:0,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2913 chr5 17517981 . A G 0 PASS DP=165;GPV=1;SPV=0.0039287;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:65,20:25,10:40,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2914 chr5 17520616 . G C 0 PASS DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:3,0:32,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2915 chr5 17520622 . C G 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:3,0:32,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2916 chr5 18898273 . A T 0 PASS DP=62;GPV=1;SPV=2.4825e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:10,6:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2917 chr5 19142888 . C T 0 PASS DP=85;GPV=1;SPV=3.0255e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:15,8:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2918 chr5 21880592 . C T 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:1,0:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2919 chr5 22696370 . C CA 0 PASS DP=43;GPV=1;SPV=0.04287;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,9:9,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2920 chr5 22885764 . G A 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2921 chr5 23093753 . T C 0 PASS DP=55;GPV=1;SPV=2.5256e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:10,11:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2922 chr5 23715625 . ATATAATATATATATATATATAT A 0 PASS DP=23;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:6,1:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2923 chr5 23818651 . C A 0 PASS DP=78;GPV=1;SPV=5.7558e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:11,9:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2924 chr5 24362633 . G T 0 PASS DP=23;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2925 chr5 24449752 . GTATATATATATATATATATATATATA G 0 PASS DP=23;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:4,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2926 chr5 25931554 . A T 0 PASS DP=27;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2927 chr5 26298904 . A C 0 PASS DP=35;GPV=1;SPV=0.36264;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,4:3,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2928 chr5 26933496 . G A 0 PASS DP=70;GPV=1;SPV=1.9242e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:14,12:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2929 chr5 27327781 . G T 0 PASS DP=43;GPV=1;SPV=0.023799;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,7:5,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2930 chr5 27560009 . C CT 0 PASS DP=31;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:9,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2931 chr5 27656828 . C A 0 PASS DP=68;GPV=1;SPV=7.5302e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:17,6:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2932 chr5 28127451 . AG A 0 PASS DP=65;GPV=1;SPV=2.1474e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:12,7:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2933 chr5 28138339 . A G 0 PASS DP=68;GPV=1;SPV=0.0016259;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:18,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2934 chr5 28440136 . G T 0 PASS DP=63;GPV=1;SPV=3.3183e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:5,7:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2935 chr5 29223416 . C T 0 PASS DP=58;GPV=1;SPV=0.0011582;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:15,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2936 chr5 30155111 . G A 0 PASS DP=53;GPV=1;SPV=0.00043265;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2937 chr5 30655965 . A G 0 PASS DP=67;GPV=1;SPV=8.6537e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:12,5:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2938 chr5 31199444 . A G 0 PASS DP=45;GPV=1;SPV=0.03185;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:2,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2939 chr5 33073496 . GTTTTTTTTTT G 0 PASS DP=36;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:2,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2940 chr5 34401085 . C T 0 PASS DP=28;GPV=1;SPV=0.026877;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,1:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2941 chr5 34530037 . C A 0 PASS DP=49;GPV=1;SPV=0.0015209;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,6:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2942 chr5 35294767 . CA C 0 PASS DP=29;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:1,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2943 chr5 37105334 . A C 0 PASS DP=47;GPV=1;SPV=0.036101;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,5:6,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2944 chr5 38134496 . AGAG A 0 PASS DP=35;GPV=1;SPV=0.011437;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2945 chr5 38272776 . GTC G 0 PASS DP=59;GPV=1;SPV=0.10026;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:16,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2946 chr5 39053890 . C CA 0 PASS DP=43;GPV=1;SPV=0.028335;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,7:6,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2947 chr5 39333595 . C CCCTTTCCATG 0 PASS DP=36;GPV=1;SPV=0.025519;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:2,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2948 chr5 39478507 . A C 0 PASS DP=42;GPV=1;SPV=0.20035;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:12,1:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2949 chr5 42448845 . T C 0 PASS DP=46;GPV=1;SPV=0.0021725;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2950 chr5 43088211 . A G 0 PASS DP=46;GPV=1;SPV=0.036676;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:13,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2951 chr5 43681259 . CA C 0 PASS DP=31;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:6,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2952 chr5 44209224 . CT C 0 PASS DP=27;GPV=1;SPV=0.0024409;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:6,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2953 chr5 44868214 . AT A 0 PASS DP=60;GPV=1;SPV=0.091905;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,1:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2954 chr5 46627803 . T A 0 PASS DP=44;GPV=1;SPV=0.007849;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2955 chr5 46693227 . C T 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2956 chr5 46772267 . T C 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2957 chr5 47048025 . C T 0 PASS DP=23;GPV=1;SPV=0.093168;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:8,3:6,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2958 chr5 47183378 . C T 0 PASS DP=39;GPV=1;SPV=0.045519;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2959 chr5 50134813 . T A 0 PASS DP=51;GPV=1;SPV=0.022618;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:5,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2960 chr5 50140509 . C T 0 PASS DP=106;GPV=1;SPV=0.023715;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:51,9:8,3:43,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2961 chr5 50142018 . T A 0 PASS DP=79;GPV=1;SPV=0.0083637;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:8,2:23,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2962 chr5 50353017 . A AGTGTGTGTGTGTGTGTGT 0 PASS DP=33;GPV=1;SPV=0.0737;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:9,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2963 chr5 51703098 . C T 0 PASS DP=42;GPV=1;SPV=1.3217e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:5,4:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2964 chr5 54275851 . A AT 0 PASS DP=46;GPV=1;SPV=0.031354;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:6,3:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2965 chr5 54749468 . C CA 0 PASS DP=33;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:5,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2966 chr5 55249182 . C CT 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:4,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2967 chr5 61756494 . G GGTGTGTGTGT 0 PASS DP=49;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:12,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2968 chr5 64208956 . T C 0 PASS DP=64;GPV=1;SPV=7.064e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,5:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2969 chr5 65559630 . G A 0 PASS DP=40;GPV=1;SPV=0.22807;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,4:8,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2970 chr5 66113763 . CA C 0 PASS DP=35;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:5,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2971 chr5 67280831 . CA C 0 PASS DP=40;GPV=1;SPV=0.00024201;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:9,7:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2972 chr5 67984149 . T TAA 0 PASS DP=27;GPV=1;SPV=0.0057971;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:7,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2973 chr5 68648681 . A ACATGGGTATTTTCGCAGCTTCC 0 PASS DP=56;GPV=1;SPV=0.0081402;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,10:9,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2974 chr5 69092095 . T A 0 PASS DP=68;GPV=1;SPV=0.042367;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,8:16,5:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2975 chr5 71442703 . G C 0 PASS DP=62;GPV=1;SPV=0.11839;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2976 chr5 72008798 . GA G 0 PASS DP=51;GPV=1;SPV=0.0018707;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,7:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2977 chr5 73449741 . C CA 0 PASS DP=25;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2978 chr5 76182959 . CAGAG C 0 PASS DP=32;GPV=1;SPV=0.10714;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2979 chr5 77335532 . G GGTGTGT 0 PASS DP=40;GPV=1;SPV=0.032417;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,2:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2980 chr5 77466806 . A ATT 0 PASS DP=45;GPV=1;SPV=0.01322;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2981 chr5 77694855 . G A 0 PASS DP=58;GPV=1;SPV=6.5361e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:11,4:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2982 chr5 78904685 . CTT C 0 PASS DP=33;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2983 chr5 79137077 . T TGAATATA 0 PASS DP=39;GPV=1;SPV=0.028936;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2984 chr5 79566669 . T C 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:15,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2985 chr5 80224133 . C CAA 0 PASS DP=40;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,9:4,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2986 chr5 80275747 . G A 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2987 chr5 81296613 . C CTT 0 PASS DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2988 chr5 82534451 . GT G 0 PASS DP=51;GPV=1;SPV=0.00019163;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:11,10:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2989 chr5 82661949 . AAGAG A 0 PASS DP=43;GPV=1;SPV=0.012445;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2990 chr5 84374197 . A G 0 PASS DP=35;GPV=1;SPV=1.6358e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:5,7:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2991 chr5 84934274 . C CA 0 PASS DP=36;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:8,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2992 chr5 85443188 . C G 0 PASS DP=54;GPV=1;SPV=4.3264e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:6,8:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2993 chr5 85994895 . AT A 0 PASS DP=58;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2994 chr5 88132228 . A ATAAACTAATTATACAATTAGTTTAT 0 PASS DP=42;GPV=1;SPV=0.024679;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2995 chr5 88464585 . GA G 0 PASS DP=47;GPV=1;SPV=1.784e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2996 chr5 88904619 . G C 0 PASS DP=53;GPV=1;SPV=0.018514;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:15,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2997 chr5 92309593 . T A 0 PASS DP=76;GPV=1;SPV=2.0254e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:13,10:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2998 chr5 94954147 . C CAA 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2999 chr5 95009056 . AAGAGAG A 0 PASS DP=26;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:5,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3000 chr5 95263507 . C T 0 PASS DP=53;GPV=1;SPV=0.015665;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:14,2:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3001 chr5 98901749 . T TA 0 PASS DP=46;GPV=1;SPV=0.0050264;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:5,9:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3002 chr5 99027283 . A G 0 PASS DP=37;GPV=1;SPV=0.0002652;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:8,6:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3003 chr5 99523029 . G A 0 PASS DP=101;GPV=1;SPV=0.025471;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:22,3:22,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3004 chr5 101502647 . A C 0 PASS DP=45;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3005 chr5 105295049 . TA T 0 PASS DP=43;GPV=1;SPV=0.0027511;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,12:12,9:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3006 chr5 105678880 . AT A 0 PASS DP=42;GPV=1;SPV=0.00023971;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:5,3:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3007 chr5 107194847 . CTTTTT C 0 PASS DP=32;GPV=1;SPV=0.0019836;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,11:8,8:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3008 chr5 107649910 . G C 0 PASS DP=56;GPV=1;SPV=0.00090534;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:6,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3009 chr5 109353445 . T C 0 PASS DP=35;GPV=1;SPV=0.1039;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:7,1:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3010 chr5 110128036 . C A 0 PASS DP=64;GPV=1;SPV=0.00010989;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:14,10:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3011 chr5 110620577 . ATCTCTCTCTCTCTCTCTCTC A 0 PASS DP=29;GPV=1;SPV=0.2419;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:4,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3012 chr5 117203277 . C T 0 PASS DP=72;GPV=1;SPV=0.057257;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3013 chr5 117366735 . TTATATA T 0 PASS DP=23;GPV=1;SPV=0.26374;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,3:4,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3014 chr5 118438718 . G A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3015 chr5 118543049 . GTGTATATGTATTAC G 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3016 chr5 118543768 . C G 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,6:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3017 chr5 118577937 . CT C 0 PASS DP=30;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3018 chr5 120048898 . ATCCTATG A 0 PASS DP=39;GPV=1;SPV=0.022127;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3019 chr5 120048914 . CTA C 0 PASS DP=44;GPV=1;SPV=0.018737;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3020 chr5 120048956 . T C 0 PASS DP=37;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3021 chr5 120195278 . G A 0 PASS DP=28;GPV=1;SPV=0.021859;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,2:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3022 chr5 121343977 . G A 0 PASS DP=37;GPV=1;SPV=0.089245;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,5:7,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3023 chr5 121493096 . A T 0 PASS DP=74;GPV=1;SPV=0.0092138;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,7:8,1:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3024 chr5 122128378 . T A 0 PASS DP=33;GPV=1;SPV=0.022595;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3025 chr5 124521954 . A AC 0 PASS DP=38;GPV=1;SPV=0.0067861;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:1,2:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3026 chr5 125216989 . A T 0 PASS DP=64;GPV=1;SPV=0.014912;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:10,5:7,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3027 chr5 126721755 . C A 0 PASS DP=37;GPV=1;SPV=0.1839;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,5:5,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3028 chr5 127930227 . C G 0 PASS DP=60;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,4:10,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3029 chr5 128915495 . G T 0 PASS DP=58;GPV=1;SPV=0.00022655;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,13:3,7:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3030 chr5 129436180 . C CT 0 PASS DP=64;GPV=1;SPV=0.00051949;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:9,2:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3031 chr5 129816655 . A G 0 PASS DP=60;GPV=1;SPV=0.029646;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3032 chr5 130538347 . G GA 0 PASS DP=28;GPV=1;SPV=0.03285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3033 chr5 130540752 . TACACAC T 0 PASS DP=36;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,8:3,2:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3034 chr5 130765983 . G A 0 PASS DP=69;GPV=1;SPV=1.152e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:11,6:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3035 chr5 132328823 . TTATATA T 0 PASS DP=36;GPV=1;SPV=0.040085;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:6,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3036 chr5 136513473 . GAA G 0 PASS DP=30;GPV=1;SPV=0.039737;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3037 chr5 137518612 . AAAGAAAG A 0 PASS DP=30;GPV=1;SPV=0.00035367;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:4,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3038 chr5 138267188 . CT C 0 PASS DP=31;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:6,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3039 chr5 138433114 . C CT 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3040 chr5 138772864 . A G 0 PASS DP=30;GPV=1;SPV=0.009553;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3041 chr5 139717201 . G T 0 PASS DP=53;GPV=1;SPV=0.0016927;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,6:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3042 chr5 139826200 . G T 0 PASS DP=55;GPV=1;SPV=0.0031706;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3043 chr5 140707351 . C G 0 PASS DP=47;GPV=1;SPV=0.00059971;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:5,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3044 chr5 141395556 . G T 0 PASS DP=46;GPV=1;SPV=0.049216;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3045 chr5 141989692 . CAAA C 0 PASS DP=36;GPV=1;SPV=0.10526;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,10:4,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3046 chr5 142306913 . C CAAA 0 PASS DP=37;GPV=1;SPV=0.029368;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:9,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3047 chr5 142311564 . TTTGTTGTTGTTGTTG T 0 PASS DP=46;GPV=1;SPV=0.00072806;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,11:3,7:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3048 chr5 142392104 . T C 0 PASS DP=24;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:2,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3049 chr5 142498760 . T G 0 PASS DP=48;GPV=1;SPV=0.0017818;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,3:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3050 chr5 144256615 . TTG T 0 PASS DP=66;GPV=1;SPV=0.00014241;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3051 chr5 146174144 . TAA T 0 PASS DP=20;GPV=1;SPV=0.0040793;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,6:0,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3052 chr5 146239484 . T C 0 PASS DP=29;GPV=1;SPV=0.031556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,2:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3053 chr5 148212480 . TTA T 0 PASS DP=32;GPV=1;SPV=0.0033988;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3054 chr5 148233325 . C T 0 PASS DP=44;GPV=1;SPV=0.048922;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:9,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3055 chr5 148547566 . T TA 0 PASS DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3056 chr5 148560205 . TA T 0 PASS DP=37;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:14,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3057 chr5 148945971 . C T 0 PASS DP=40;GPV=1;SPV=0.0089978;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:9,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3058 chr5 149598777 . GAT G 0 PASS DP=37;GPV=1;SPV=0.28571;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3059 chr5 151764045 . TATATATA T 0 PASS DP=24;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,4:0,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3060 chr5 151971915 . C A 0 PASS DP=58;GPV=1;SPV=0.00084999;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:13,8:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3061 chr5 153098547 . C T 0 PASS DP=58;GPV=1;SPV=0.00016168;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,5:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3062 chr5 154525165 . T A 0 PASS DP=74;GPV=1;SPV=8.2514e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:7,11:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3063 chr5 154525791 . G A 0 PASS DP=34;GPV=1;SPV=0.00058707;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:0,5:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3064 chr5 154574640 . C G 0 PASS DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3065 chr5 155528491 . G A 0 PASS DP=55;GPV=1;SPV=0.0046429;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3066 chr5 156298576 . C CT 0 PASS DP=20;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3067 chr5 156307555 . G T 0 PASS DP=16;GPV=1;SPV=0.034965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:2,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3068 chr5 156981160 . T C 0 PASS DP=45;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,5:5,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3069 chr5 157490891 . C CA 0 PASS DP=35;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,8:8,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3070 chr5 157607172 . C CAAAAA 0 PASS DP=24;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:4,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3071 chr5 158310000 . T C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3072 chr5 159241128 . A T 0 PASS DP=51;GPV=1;SPV=0.059824;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:6,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3073 chr5 159579503 . G GTGTATATA 0 PASS DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,7:2,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3074 chr5 160009597 . C CATAA 0 PASS DP=49;GPV=1;SPV=0.020191;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:9,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3075 chr5 162316689 . C G 0 PASS DP=31;GPV=1;SPV=0.041563;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3076 chr5 164834924 . T C 0 PASS DP=24;GPV=1;SPV=0.049123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,3:1,1:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3077 chr5 165595663 . T G 0 PASS DP=46;GPV=1;SPV=0.0079657;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3078 chr5 166085665 . TAGAAGAATCTAACTAGAG T 0 PASS DP=60;GPV=1;SPV=0.01794;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,3:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3079 chr5 167101939 . T TA 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3080 chr5 168374065 . G A 0 PASS DP=27;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3081 chr5 168548035 . T TACACACACACAC 0 PASS DP=37;GPV=1;SPV=0.0024977;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3082 chr5 169026345 . A G 0 PASS DP=72;GPV=1;SPV=1.5269e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:13,8:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3083 chr5 170636716 . C T 0 PASS DP=61;GPV=1;SPV=1.8479e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,4:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3084 chr5 173289783 . CCCTTCCTTCCTTCCTTCCTTCCTT C 0 PASS DP=23;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3085 chr5 174950954 . C CAAAAAAAA 0 PASS DP=24;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:10,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3086 chr5 175929273 . A G 0 PASS DP=67;GPV=1;SPV=0.029194;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,7:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3087 chr5 175955410 . G C 0 PASS DP=110;GPV=1;SPV=0.049555;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:28,6:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3088 chr5 176072362 . G A 0 PASS DP=85;GPV=1;SPV=0.040785;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:12,8:23,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3089 chr5 176076559 . A C 0 PASS DP=58;GPV=1;SPV=0.0311;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:15,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3090 chr5 176089142 . A G 0 PASS DP=64;GPV=1;SPV=0.092709;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3091 chr5 176104048 . C T 0 PASS DP=71;GPV=1;SPV=0.011566;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:11,2:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3092 chr5 176231512 . C T 0 PASS DP=45;GPV=1;SPV=0.029148;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,1:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3093 chr5 176873132 . A C 0 PASS DP=38;GPV=1;SPV=0.032243;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:11,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3094 chr5 177838191 . T C 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:20,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3095 chr5 177890659 . A G 0 PASS DP=52;GPV=1;SPV=0.0026931;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:3,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3096 chr5 178002192 . CCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C 0 PASS DP=38;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,4:1,0:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3097 chr5 178731336 . AT A 0 PASS DP=48;GPV=1;SPV=0.00044686;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,13:2,5:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3098 chr5 178854098 . C CT 0 PASS DP=37;GPV=1;SPV=0.0005304;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:2,8:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3099 chr5 179003538 . AT A 0 PASS DP=57;GPV=1;SPV=0.051834;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3100 chr5 179077809 . C CT 0 PASS DP=28;GPV=1;SPV=0.0086957;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3101 chr5 180233038 . A AACACACACACACACACAC 0 PASS DP=29;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,5:5,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3102 chr5 181169685 . C A 0 PASS DP=74;GPV=1;SPV=0.057399;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:20,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3103 chr6 325357 . G A 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:2,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3104 chr6 857841 . TCGATCCAC T 0 PASS DP=29;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3105 chr6 1521364 . T G 0 PASS DP=53;GPV=1;SPV=0.08111;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3106 chr6 3298769 . G A 0 PASS DP=65;GPV=1;SPV=1.8219e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:7,12:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3107 chr6 4756590 . G C 0 PASS DP=52;GPV=1;SPV=0.19341;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:14,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3108 chr6 5304618 . C T 0 PASS DP=49;GPV=1;SPV=0.00021682;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:9,8:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3109 chr6 6796626 . ATT A 0 PASS DP=30;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:9,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3110 chr6 6855132 . C CAA 0 PASS DP=49;GPV=1;SPV=0.0041602;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,8:6,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3111 chr6 7418032 . A G 0 PASS DP=52;GPV=1;SPV=0.00097732;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3112 chr6 8567230 . T C 0 PASS DP=22;GPV=1;SPV=0.039341;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3113 chr6 9159529 . C T 0 PASS DP=22;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,4:0,1:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3114 chr6 11259935 . A AACACACACACACACAC 0 PASS DP=43;GPV=1;SPV=0.031608;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3115 chr6 11776926 . C A 0 PASS DP=40;GPV=1;SPV=0.0078236;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3116 chr6 11931079 . G GGAGA 0 PASS DP=44;GPV=1;SPV=0.047842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:7,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3117 chr6 12001582 . T C 0 PASS DP=46;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3118 chr6 13799827 . CT C 0 PASS DP=28;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:3,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3119 chr6 14947393 . C CA 0 PASS DP=36;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,7:2,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3120 chr6 15404519 . GCACA G 0 PASS DP=31;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:2,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3121 chr6 16933294 . C A 0 PASS DP=60;GPV=1;SPV=0.00026567;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:11,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3122 chr6 17587129 . C T 0 PASS DP=46;GPV=1;SPV=0.017571;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,2:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3123 chr6 18492372 . AAAC A 0 PASS DP=46;GPV=1;SPV=0.037638;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:12,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3124 chr6 19618705 . A G 0 PASS DP=35;GPV=1;SPV=0.00095695;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3125 chr6 20472025 . A AACACACACAC 0 PASS DP=22;GPV=1;SPV=0.20979;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3126 chr6 20936241 . A AT 0 PASS DP=29;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:7,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3127 chr6 21909773 . G T 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3128 chr6 21909776 . G T 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3129 chr6 24327451 . A AAGTT 0 PASS DP=54;GPV=1;SPV=0.0017164;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:6,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3130 chr6 24624012 . G GTTTTC 0 PASS DP=31;GPV=1;SPV=0.11976;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3131 chr6 24967909 . CTT C 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3132 chr6 25853406 . GT G 0 PASS DP=26;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:7,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3133 chr6 26913994 . G GAGAT 0 PASS DP=36;GPV=1;SPV=0.038306;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:5,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3134 chr6 27265641 . C CT 0 PASS DP=46;GPV=1;SPV=0.01269;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3135 chr6 27561063 . TC T 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3136 chr6 27646781 . AT A 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3137 chr6 28063651 . C CA 0 PASS DP=31;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,5:3,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3138 chr6 30382634 . A AAATAATAATAATAATAAT 0 PASS DP=49;GPV=1;SPV=0.073845;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:13,3:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3139 chr6 31168238 . CT C 0 PASS DP=39;GPV=1;SPV=0.027999;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,2:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3140 chr6 31428117 . TATTC T 0 PASS DP=18;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:0,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3141 chr6 31722845 . C CA 0 PASS DP=34;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,8:8,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3142 chr6 32044978 . G A 0 PASS DP=87;GPV=1;SPV=0.018384;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:12,5:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3143 chr6 36496043 . A AT 0 PASS DP=34;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3144 chr6 36549329 . CTCT C 0 PASS DP=30;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,9:0,2:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3145 chr6 36777773 . CA C 0 PASS DP=16;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:0,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3146 chr6 37464892 . CTGTG C 0 PASS DP=48;GPV=1;SPV=0.0019606;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:9,7:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3147 chr6 39281122 . G GTT 0 PASS DP=75;GPV=1;SPV=0.011209;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:23,2:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3148 chr6 42640399 . T G 0 PASS DP=49;GPV=1;SPV=0.0066302;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:11,7:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3149 chr6 42974448 . T G 0 PASS DP=28;GPV=1;SPV=0.021256;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:3,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3150 chr6 43294524 . T TCAC 0 PASS DP=40;GPV=1;SPV=0.072765;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:8,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3151 chr6 43460695 . A ATT 0 PASS DP=57;GPV=1;SPV=0.0012227;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:15,9:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3152 chr6 45958424 . A T 0 PASS DP=20;GPV=1;SPV=0.031857;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,7:1,4:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3153 chr6 46941470 . G A 0 PASS DP=45;GPV=1;SPV=0.028266;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:15,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3154 chr6 49280081 . A G 0 PASS DP=68;GPV=1;SPV=0.00056171;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,6:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3155 chr6 49297543 . C T 0 PASS DP=56;GPV=1;SPV=0.00036855;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:13,4:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3156 chr6 52172643 . AAAGAAAGG A 0 PASS DP=55;GPV=1;SPV=0.0094161;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3157 chr6 52880731 . G A 0 PASS DP=71;GPV=1;SPV=6.0412e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:9,6:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3158 chr6 52945464 . A G 0 PASS DP=58;GPV=1;SPV=0.0073133;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:11,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3159 chr6 53323576 . C CTT 0 PASS DP=24;GPV=1;SPV=0.012217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,7:0,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3160 chr6 53821879 . GT G 0 PASS DP=39;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:5,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3161 chr6 54210730 . GA G 0 PASS DP=42;GPV=1;SPV=0.044444;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,5:6,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3162 chr6 54520748 . A AACAC 0 PASS DP=54;GPV=1;SPV=0.026985;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:11,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3163 chr6 54552173 . A C 0 PASS DP=20;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3164 chr6 56595997 . ACTTT A 0 PASS DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:9,1:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3165 chr6 56706326 . G A 0 PASS DP=46;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,4:6,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3166 chr6 57252437 . G GCCT 0 PASS DP=61;GPV=1;SPV=1.0995e-06;SS=2;SSC=59;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:8,7:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3167 chr6 58194425 . A T 0 PASS DP=55;GPV=1;SPV=0.00060405;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3168 chr6 58924430 . G T 0 PASS DP=35;GPV=1;SPV=0.074026;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3169 chr6 60295723 . T C 0 PASS DP=71;GPV=1;SPV=1.5356e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:10,4:10,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3170 chr6 60417585 . TAAAA T 0 PASS DP=20;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3171 chr6 60944908 . G A 0 PASS DP=73;GPV=1;SPV=4.864e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:11,10:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3172 chr6 61210112 . CAAAAAAAAAAAAAAA C 0 PASS DP=27;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:3,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3173 chr6 64697953 . C CA 0 PASS DP=59;GPV=1;SPV=0.003938;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,7:7,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3174 chr6 65293726 . G A 0 PASS DP=67;GPV=1;SPV=2.5502e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:11,10:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3175 chr6 66148255 . T C 0 PASS DP=63;GPV=1;SPV=4.6321e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,9:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3176 chr6 67293929 . A G 0 PASS DP=56;GPV=1;SPV=0.080441;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,5:8,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3177 chr6 67293930 . C T 0 PASS DP=56;GPV=1;SPV=0.05384;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,5:9,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3178 chr6 67293931 . G A 0 PASS DP=53;GPV=1;SPV=0.073823;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,5:9,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3179 chr6 67442154 . C T 0 PASS DP=36;GPV=1;SPV=0.018733;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,2:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3180 chr6 69219487 . A G 0 PASS DP=24;GPV=1;SPV=0.051282;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:1,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3181 chr6 69532257 . CTCTG C 0 PASS DP=37;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3182 chr6 69888777 . CA C 0 PASS DP=41;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:6,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3183 chr6 70271703 . A G 0 PASS DP=66;GPV=1;SPV=7.3475e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:12,7:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3184 chr6 70652449 . C CT 0 PASS DP=32;GPV=1;SPV=0.0033618;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:5,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3185 chr6 70873403 . G A 0 PASS DP=75;GPV=1;SPV=0.00013918;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:12,7:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3186 chr6 71315288 . T TATATATATATATATATCCA 0 PASS DP=31;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:6,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3187 chr6 72895114 . TA T 0 PASS DP=24;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:3,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3188 chr6 73673929 . C A 0 PASS DP=26;GPV=1;SPV=0.00010562;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,2:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3189 chr6 74031899 . G A 0 PASS DP=72;GPV=1;SPV=3.2589e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:10,7:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3190 chr6 75944917 . T C 0 PASS DP=67;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3191 chr6 76171460 . T TTTA 0 PASS DP=20;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:1,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3192 chr6 77706329 . G A 0 PASS DP=52;GPV=1;SPV=0.00012791;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,5:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3193 chr6 78087069 . A T 0 PASS DP=49;GPV=1;SPV=0.012665;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3194 chr6 78117123 . G A 0 PASS DP=64;GPV=1;SPV=2.158e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:6,8:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3195 chr6 79102143 . C A 0 PASS DP=44;GPV=1;SPV=0.013043;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,6:4,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3196 chr6 81776487 . CA C 0 PASS DP=27;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:6,7:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3197 chr6 82919438 . C T 0 PASS DP=42;GPV=1;SPV=0.001632;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,3:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3198 chr6 84249054 . T TTTTC 0 PASS DP=42;GPV=1;SPV=0.0034481;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:5,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3199 chr6 84402981 . CAAAAAAAAAAAAAAA C 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3200 chr6 84491047 . CT C 0 PASS DP=27;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,8:1,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3201 chr6 84995233 . A T 0 PASS DP=57;GPV=1;SPV=0.017466;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:8,1:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3202 chr6 85023514 . T TAAA 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:6,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3203 chr6 85654481 . CAA C 0 PASS DP=18;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3204 chr6 87128727 . ATCATATG A 0 PASS DP=33;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:1,3:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3205 chr6 90323992 . C CT 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3206 chr6 91172037 . C CT 0 PASS DP=29;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,6:1,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3207 chr6 91436194 . TTGTG T 0 PASS DP=33;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,8:2,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3208 chr6 93168016 . A C 0 PASS DP=50;GPV=1;SPV=0.037288;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:12,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3209 chr6 93556958 . A ATG 0 PASS DP=20;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3210 chr6 93699539 . C T 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3211 chr6 94335781 . G GAGAT 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3212 chr6 96100250 . C A 0 PASS DP=35;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3213 chr6 97976066 . T G 0 PASS DP=57;GPV=1;SPV=0.00029607;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:13,7:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3214 chr6 98359516 . A T 0 PASS DP=53;GPV=1;SPV=0.1129;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,3:7,2:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3215 chr6 99385976 . CA C 0 PASS DP=29;GPV=1;SPV=0.0063768;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3216 chr6 100074033 . T A 0 PASS DP=63;GPV=1;SPV=0.00050477;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,7:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3217 chr6 102373125 . AAT A 0 PASS DP=57;GPV=1;SPV=0.0039611;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,13:8,4:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3218 chr6 102726156 . C T 0 PASS DP=44;GPV=1;SPV=0.00013031;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,3:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3219 chr6 102763104 . C T 0 PASS DP=66;GPV=1;SPV=2.9968e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:13,10:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3220 chr6 102790516 . C T 0 PASS DP=53;GPV=1;SPV=0.0010576;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:5,2:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3221 chr6 104394911 . C T 0 PASS DP=57;GPV=1;SPV=0.00069928;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3222 chr6 105886762 . T A 0 PASS DP=38;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,5:7,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3223 chr6 106517435 . C CACACATATATAT 0 PASS DP=43;GPV=1;SPV=0.019715;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:13,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3224 chr6 107177131 . CTT C 0 PASS DP=29;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,9:5,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3225 chr6 108022016 . TA T 0 PASS DP=68;GPV=1;SPV=0.101;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3226 chr6 109655627 . G T 0 PASS DP=56;GPV=1;SPV=2.706e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:10,4:4,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3227 chr6 110553287 . TA T 0 PASS DP=42;GPV=1;SPV=0.02002;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:7,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3228 chr6 111163146 . ATT A 0 PASS DP=34;GPV=1;SPV=0.015417;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3229 chr6 113314517 . G A 0 PASS DP=42;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:11,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3230 chr6 113611727 . G A 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3231 chr6 113666600 . A G 0 PASS DP=20;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:5,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3232 chr6 114459985 . G GT 0 PASS DP=24;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3233 chr6 117398476 . C T 0 PASS DP=58;GPV=1;SPV=0.00023992;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,7:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3234 chr6 117452883 . G A 0 PASS DP=62;GPV=1;SPV=0.00091926;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,3:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3235 chr6 117609264 . C CT 0 PASS DP=40;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3236 chr6 118070992 . G A 0 PASS DP=26;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:3,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3237 chr6 118989801 . C CATTTATTT 0 PASS DP=57;GPV=1;SPV=0.03973;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:6,4:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3238 chr6 122357957 . G A 0 PASS DP=33;GPV=1;SPV=0.010883;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,13:0,8:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3239 chr6 122799961 . C CTT 0 PASS DP=25;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3240 chr6 123266483 . A AAT 0 PASS DP=25;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:2,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3241 chr6 123799546 . CATATATAT C 0 PASS DP=25;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3242 chr6 126147120 . A G 0 PASS DP=41;GPV=1;SPV=0.0081185;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3243 chr6 126287669 . T A 0 PASS DP=39;GPV=1;SPV=1.2131e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:5,20:2,10:3,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3244 chr6 127263211 . G T 0 PASS DP=48;GPV=1;SPV=0.00015537;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3245 chr6 129048489 . T C 0 PASS DP=30;GPV=1;SPV=0.072018;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:4,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3246 chr6 130861874 . C CAAAAAA 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3247 chr6 132589742 . CAAAAAAAAAA C 0 PASS DP=23;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3248 chr6 133394284 . G A 0 PASS DP=27;GPV=1;SPV=0.016317;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,5:2,1:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3249 chr6 134528947 . A C 0 PASS DP=32;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3250 chr6 134754863 . C CT 0 PASS DP=25;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:10,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3251 chr6 134926822 . A G 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,7:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3252 chr6 136381917 . C G 0 PASS DP=43;GPV=1;SPV=0.097397;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:15,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3253 chr6 137377819 . CAAA C 0 PASS DP=33;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3254 chr6 143042681 . TA T 0 PASS DP=68;GPV=1;SPV=0.0021;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:10,5:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3255 chr6 145396551 . CTCAGGTACATAAACTTTGCAATGTCTGCCT C 0 PASS DP=58;GPV=1;SPV=0.045916;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:9,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3256 chr6 147790792 . C T 0 PASS DP=19;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,3:1,2:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3257 chr6 147863838 . CT C 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:9,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3258 chr6 148568676 . A ATATC 0 PASS DP=21;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:1,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3259 chr6 150886435 . CA C 0 PASS DP=28;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:12,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3260 chr6 151208830 . G T 0 PASS DP=60;GPV=1;SPV=7.799e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:10,9:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3261 chr6 151740285 . A ATT 0 PASS DP=34;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3262 chr6 152697504 . A T 0 PASS DP=45;GPV=1;SPV=0.042555;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:7,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3263 chr6 154331411 . GAGAA G 0 PASS DP=39;GPV=1;SPV=0.081081;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3264 chr6 154426346 . T TTTTATTTA 0 PASS DP=59;GPV=1;SPV=0.017962;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:10,7:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3265 chr6 155502665 . C T 0 PASS DP=57;GPV=1;SPV=7.5695e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,5:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3266 chr6 155828878 . C CATATATATATAT 0 PASS DP=34;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,5:3,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3267 chr6 156433103 . ATATAT A 0 PASS DP=32;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,2:0,0:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3268 chr6 156880739 . C CA 0 PASS DP=22;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:5,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3269 chr6 157507369 . C T 0 PASS DP=45;GPV=1;SPV=0.00023911;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,16:6,5:3,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3270 chr6 158029042 . C CCCTGCAGAGGGTGGGCCCTGGGTCT 0 PASS DP=44;GPV=1;SPV=0.053015;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3271 chr6 159269210 . T C 0 PASS DP=46;GPV=1;SPV=0.026061;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:3,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3272 chr6 159269281 . TATCTATCTATCC T 0 PASS DP=33;GPV=1;SPV=0.011795;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3273 chr6 159408174 . T TA 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3274 chr6 160958101 . C CTATATATA 0 PASS DP=26;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3275 chr6 161453741 . T C 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3276 chr6 162279405 . AAAAG A 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3277 chr6 162667953 . A G 0 PASS DP=77;GPV=1;SPV=4.0465e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:12,15:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3278 chr6 164719165 . C T 0 PASS DP=58;GPV=1;SPV=0.00017983;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:15,23:11,14:4,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3279 chr6 165202989 . C T 0 PASS DP=68;GPV=1;SPV=0.055233;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:20,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3280 chr6 165306915 . T TTG 0 PASS DP=32;GPV=1;SPV=0.0077494;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:3,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3281 chr6 165943346 . G GAAAAGAAAGAAAGAAAGAAAGAAAGAA 0 PASS DP=36;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:7,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3282 chr6 166304496 . G GGCTGAAATTACCAT 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3283 chr6 166650231 . A T 0 PASS DP=50;GPV=1;SPV=0.00037902;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3284 chr6 167490297 . C CAA 0 PASS DP=34;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,5:2,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3285 chr6 168364594 . C T 0 PASS DP=43;GPV=1;SPV=0.0069124;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:3,9:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3286 chr6 168572298 . T C 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3287 chr6 168680341 . C T 0 PASS DP=48;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:0,3:0,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3288 chr6 169514544 . GA G 0 PASS DP=55;GPV=1;SPV=0.028551;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:14,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3289 chr6 169895224 . G GA 0 PASS DP=67;GPV=1;SPV=8.0768e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:12,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3290 chr7 31456 . T G 0 PASS DP=80;GPV=1;SPV=0.012958;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:11,1:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3291 chr7 1693824 . C T 0 PASS DP=72;GPV=1;SPV=2.5955e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:6,7:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3292 chr7 1903563 . G A 0 PASS DP=28;GPV=1;SPV=0.024017;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:3,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3293 chr7 4448610 . AT A 0 PASS DP=46;GPV=1;SPV=0.018907;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3294 chr7 4819072 . C CT 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3295 chr7 4973319 . C CT 0 PASS DP=26;GPV=1;SPV=0.15021;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:6,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3296 chr7 5484639 . A AT 0 PASS DP=44;GPV=1;SPV=0.016023;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:5,6:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3297 chr7 5857708 . C T 0 PASS DP=42;GPV=1;SPV=0.029938;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3298 chr7 6313076 . ATT A 0 PASS DP=46;GPV=1;SPV=0.047337;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:4,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3299 chr7 6743832 . G A 0 PASS DP=53;GPV=1;SPV=0.027715;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:18,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3300 chr7 7022753 . G A 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3301 chr7 8410432 . TATATATATA T 0 PASS DP=16;GPV=1;SPV=0.0034965;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:0,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3302 chr7 12538980 . C A 0 PASS DP=58;GPV=1;SPV=0.0002515;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3303 chr7 12608319 . ATG A 0 PASS DP=54;GPV=1;SPV=0.02313;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3304 chr7 12621637 . GT G 0 PASS DP=29;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,9:3,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3305 chr7 13476115 . A ATTTTTTTT 0 PASS DP=26;GPV=1;SPV=0.0036508;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,9:0,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3306 chr7 14211317 . TA T 0 PASS DP=46;GPV=1;SPV=0.054264;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3307 chr7 16219670 . C T 0 PASS DP=26;GPV=1;SPV=0.021739;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3308 chr7 16352879 . GCACA G 0 PASS DP=28;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,5:2,3:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3309 chr7 16551767 . TAA T 0 PASS DP=59;GPV=1;SPV=0.0034707;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:13,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3310 chr7 16556070 . TA T 0 PASS DP=57;GPV=1;SPV=0.00094545;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3311 chr7 16556706 . GT G 0 PASS DP=79;GPV=1;SPV=9.1018e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:13,5:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3312 chr7 18799038 . AAGACACACACACACAC A 0 PASS DP=54;GPV=1;SPV=0.0031186;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:10,6:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3313 chr7 18817299 . G T 0 PASS DP=58;GPV=1;SPV=8.0727e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:5,8:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3314 chr7 21218988 . G A 0 PASS DP=38;GPV=1;SPV=0.027772;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,5:4,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3315 chr7 21570883 . TA T 0 PASS DP=47;GPV=1;SPV=0.027654;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,5:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3316 chr7 21619979 . C G 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3317 chr7 22491415 . G A 0 PASS DP=66;GPV=1;SPV=0.00012013;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:11,6:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3318 chr7 22592889 . TAGGAAAGAATGTTGCCCTGTAG T 0 PASS DP=42;GPV=1;SPV=0.00031586;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:4,4:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3319 chr7 23618563 . A T 0 PASS DP=39;GPV=1;SPV=0.081016;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:7,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3320 chr7 23630505 . A G 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3321 chr7 24117614 . G A 0 PASS DP=52;GPV=1;SPV=0.00097732;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:7,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3322 chr7 24152155 . G A 0 PASS DP=45;GPV=1;SPV=0.0076269;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3323 chr7 24377884 . T C 0 PASS DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3324 chr7 25084082 . CT C 0 PASS DP=24;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3325 chr7 26284380 . GTATA G 0 PASS DP=38;GPV=1;SPV=0.031941;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:11,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3326 chr7 26317659 . CT C 0 PASS DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3327 chr7 27309471 . C T 0 PASS DP=68;GPV=1;SPV=1.1295e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:8,8:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3328 chr7 29541131 . A G 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3329 chr7 30006116 . CT C 0 PASS DP=29;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,8:3,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3330 chr7 31192393 . CAAAAAAAAAAAAAAAAAA C 0 PASS DP=24;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3331 chr7 33525617 . C T 0 PASS DP=57;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:17,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3332 chr7 34400745 . C CTT 0 PASS DP=26;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:2,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3333 chr7 34686960 . CA C 0 PASS DP=39;GPV=1;SPV=0.029051;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:8,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3334 chr7 35281894 . CA C 0 PASS DP=33;GPV=1;SPV=0.0027765;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,8:3,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3335 chr7 36272519 . T G 0 PASS DP=54;GPV=1;SPV=0.063676;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:18,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3336 chr7 38344493 . G A 0 PASS DP=44;GPV=1;SPV=0.13372;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:16,1:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3337 chr7 38408752 . A C 0 PASS DP=41;GPV=1;SPV=0.39286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,4:2,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3338 chr7 39930838 . A T 0 PASS DP=47;GPV=1;SPV=0.11029;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3339 chr7 40064817 . T C 0 PASS DP=39;GPV=1;SPV=0.00042089;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:7,7:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3340 chr7 43028716 . G A 0 PASS DP=68;GPV=1;SPV=1.1295e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:13,4:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3341 chr7 43945776 . CT C 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3342 chr7 44872252 . G A 0 PASS DP=71;GPV=1;SPV=9.1148e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,22:9,15:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3343 chr7 45782740 . AT A 0 PASS DP=29;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:6,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3344 chr7 45817605 . A C 0 PASS DP=31;GPV=1;SPV=0.022724;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3345 chr7 46142778 . T G 0 PASS DP=35;GPV=1;SPV=0.01921;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3346 chr7 48759056 . A AACACACACACACAC 0 PASS DP=33;GPV=1;SPV=0.037959;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:10,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3347 chr7 50539850 . C T 0 PASS DP=69;GPV=1;SPV=0.00032942;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,7:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3348 chr7 51896176 . C CTTAAGCAA 0 PASS DP=60;GPV=1;SPV=0.0026395;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,8:8,2:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3349 chr7 51896180 . T TGGATTAAGG 0 PASS DP=55;GPV=1;SPV=0.008813;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,7:9,1:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3350 chr7 51896182 . T G 0 PASS DP=57;GPV=1;SPV=0.0067299;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,7:8,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3351 chr7 52353057 . A C 0 PASS DP=86;GPV=1;SPV=1.6121e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,22:14,14:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3352 chr7 54254829 . GT G 0 PASS DP=45;GPV=1;SPV=0.0014755;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3353 chr7 56166301 . C CAA 0 PASS DP=24;GPV=1;SPV=0.0064996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:1,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3354 chr7 56768611 . C CA 0 PASS DP=34;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:6,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3355 chr7 56986716 . C G 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:1,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3356 chr7 57034955 . C A 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3357 chr7 58069949 . C T 0 PASS DP=164;GPV=1;SPV=0.0235;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:60,10:41,9:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3358 chr7 58074607 . A G 0 PASS DP=217;GPV=1;SPV=0.024322;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:85,15:58,7:27,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3359 chr7 58767509 . T G 0 PASS DP=24;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3360 chr7 58894373 . A G 0 PASS DP=304;GPV=1;SPV=0.00010709;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:96,34:32,7:64,27
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3361 chr7 60031408 . A T 0 PASS DP=148;GPV=1;SPV=0.015827;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:60,13:45,8:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3362 chr7 60047386 . C G 0 PASS DP=453;GPV=1;SPV=0.020488;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:235:210,25:146,14:64,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3363 chr7 60914309 . GATGATGATTCCTTTCGATATCATTTGATGATTCCATTCAATTCCATTCT G 0 PASS DP=59;GPV=1;SPV=0.079011;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3364 chr7 60966013 . G T 0 PASS DP=149;GPV=1;SPV=0.0069542;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:62,11:26,4:36,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3365 chr7 61419712 . CT C 0 PASS DP=61;GPV=1;SPV=0.02424;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3366 chr7 62273765 . G A 0 PASS DP=82;GPV=1;SPV=0.035271;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:14,3:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3367 chr7 62331223 . G A 0 PASS DP=64;GPV=1;SPV=0.0001759;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,3:12,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3368 chr7 62431487 . G T 0 PASS DP=110;GPV=1;SPV=0.039578;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:21,10:24,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3369 chr7 63757346 . C T 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3370 chr7 63759423 . C T 0 PASS DP=62;GPV=1;SPV=0.056405;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:19,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3371 chr7 63759567 . C A 0 PASS DP=50;GPV=1;SPV=0.119;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:0,0:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3372 chr7 64089741 . C T 0 PASS DP=79;GPV=1;SPV=1.7368e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,8:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3373 chr7 64096569 . G A 0 PASS DP=42;GPV=1;SPV=0.0028734;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:10,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3374 chr7 65099169 . G A 0 PASS DP=67;GPV=1;SPV=0.045858;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:16,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3375 chr7 65101107 . C CT 0 PASS DP=31;GPV=1;SPV=0.011071;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:4,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3376 chr7 65784392 . T C 0 PASS DP=74;GPV=1;SPV=0.0092406;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:16,9:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3377 chr7 66324807 . A C 0 PASS DP=41;GPV=1;SPV=0.28571;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3378 chr7 67225790 . G A 0 PASS DP=48;GPV=1;SPV=0.011304;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:5,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3379 chr7 67712804 . T G 0 PASS DP=49;GPV=1;SPV=0.045385;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,2:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3380 chr7 67730877 . TAG T 0 PASS DP=29;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:5,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3381 chr7 67967899 . A ATTAT 0 PASS DP=53;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,5:10,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3382 chr7 68476999 . A ATG 0 PASS DP=47;GPV=1;SPV=0.027654;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3383 chr7 69021853 . T C 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:12,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3384 chr7 69073218 . CT C 0 PASS DP=30;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:3,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3385 chr7 69927186 . T TTATATA 0 PASS DP=44;GPV=1;SPV=0.037194;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3386 chr7 71447728 . T A 0 PASS DP=60;GPV=1;SPV=8.1411e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,15:10,8:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3387 chr7 72588022 . A G 0 PASS DP=44;GPV=1;SPV=0.030898;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,6:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3388 chr7 72602750 . T A 0 PASS DP=73;GPV=1;SPV=0.0061179;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:18,7:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3389 chr7 72615348 . G GGA 0 PASS DP=62;GPV=1;SPV=0.016937;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:17,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3390 chr7 72713300 . CA C 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3391 chr7 73156587 . GC G 0 PASS DP=41;GPV=1;SPV=0.038274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3392 chr7 73639000 . GA G 0 PASS DP=56;GPV=1;SPV=0.00026967;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,8:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3393 chr7 74336891 . T TTTG 0 PASS DP=29;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,5:6,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3394 chr7 74410895 . AGAGAGAAG A 0 PASS DP=34;GPV=1;SPV=0.0059157;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3395 chr7 74460418 . T A 0 PASS DP=75;GPV=1;SPV=9.5049e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:14,8:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3396 chr7 75715458 . C G 0 PASS DP=46;GPV=1;SPV=0.036101;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,5:9,1:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3397 chr7 75723951 . G T 0 PASS DP=46;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,4:6,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3398 chr7 76514912 . A C 0 PASS DP=41;GPV=1;SPV=0.05;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:0,3:0,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3399 chr7 76757277 . T TTTTCTTTCTTTCTTTCTTTCTTTCTTTC 0 PASS DP=20;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:1,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3400 chr7 76882331 . G GAGAAA 0 PASS DP=36;GPV=1;SPV=0.18281;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,6:10,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3401 chr7 76993485 . T C 0 PASS DP=69;GPV=1;SPV=0.044663;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3402 chr7 79653897 . G T 0 PASS DP=62;GPV=1;SPV=2.8158e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:12,5:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3403 chr7 83387850 . GT G 0 PASS DP=48;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,4:6,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3404 chr7 83515293 . GA G 0 PASS DP=36;GPV=1;SPV=0.011976;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3405 chr7 86187771 . T C 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3406 chr7 87999987 . TA T 0 PASS DP=39;GPV=1;SPV=0.0041611;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3407 chr7 88127476 . C G 0 PASS DP=70;GPV=1;SPV=1.2075e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:11,8:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3408 chr7 88266099 . C T 0 PASS DP=50;GPV=1;SPV=0.010479;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,4:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3409 chr7 88814447 . A AAC 0 PASS DP=38;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,8:4,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3410 chr7 89176587 . C T 0 PASS DP=19;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,3:5,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3411 chr7 90331378 . G A 0 PASS DP=52;GPV=1;SPV=7.9892e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,5:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3412 chr7 91729131 . G GGAAGGGA 0 PASS DP=20;GPV=1;SPV=0.28571;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,2:2,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3413 chr7 94339211 . G A 0 PASS DP=54;GPV=1;SPV=0.003791;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:9,5:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3414 chr7 94376048 . A C 0 PASS DP=39;GPV=1;SPV=0.045738;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3415 chr7 95100844 . AT A 0 PASS DP=22;GPV=1;SPV=0.011868;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:4,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3416 chr7 95580039 . TTATATATATATATATATATA T 0 PASS DP=20;GPV=1;SPV=0.10577;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3417 chr7 98889555 . TA T 0 PASS DP=42;GPV=1;SPV=0.015475;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:8,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3418 chr7 98889557 . A T 0 PASS DP=36;GPV=1;SPV=0.0088061;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:5,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3419 chr7 101063702 . T C 0 PASS DP=40;GPV=1;SPV=0.083916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,5:3,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3420 chr7 101825753 . C CTGTG 0 PASS DP=41;GPV=1;SPV=0.0054096;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:7,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3421 chr7 102488756 . A G 0 PASS DP=113;GPV=1;SPV=0.034205;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:22,6:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3422 chr7 102490814 . C T 0 PASS DP=101;GPV=1;SPV=0.034752;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:17,4:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3423 chr7 102502759 . C CA 0 PASS DP=110;GPV=1;SPV=0.0096458;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:50,10:28,6:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3424 chr7 102592517 . C A 0 PASS DP=91;GPV=1;SPV=0.014313;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:35,9:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3425 chr7 102605663 . G A 0 PASS DP=186;GPV=1;SPV=0.0092848;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:71,14:48,8:23,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3426 chr7 105492052 . CAA C 0 PASS DP=39;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,7:5,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3427 chr7 106628825 . C CTT 0 PASS DP=23;GPV=1;SPV=0.0066141;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:1,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3428 chr7 107722685 . C CA 0 PASS DP=34;GPV=1;SPV=0.0045822;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,9:6,4:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3429 chr7 108024743 . G A 0 PASS DP=47;GPV=1;SPV=0.034636;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3430 chr7 108749132 . C T 0 PASS DP=71;GPV=1;SPV=0.0011981;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:14,6:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3431 chr7 108884387 . CA C 0 PASS DP=46;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,7:8,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3432 chr7 110802341 . G A 0 PASS DP=45;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,4:4,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3433 chr7 110802349 . G A 0 PASS DP=40;GPV=1;SPV=0.028708;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,4:2,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3434 chr7 111217126 . T A 0 PASS DP=45;GPV=1;SPV=0.034921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,4:4,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3435 chr7 111632668 . C CT 0 PASS DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3436 chr7 112445062 . CT C 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3437 chr7 113840324 . G T 0 PASS DP=59;GPV=1;SPV=0.00028547;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:13,7:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3438 chr7 114176298 . T TTC 0 PASS DP=32;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,3:0,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3439 chr7 116288619 . A ATTTTT 0 PASS DP=33;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3440 chr7 118804763 . A G 0 PASS DP=56;GPV=1;SPV=9.294e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:9,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3441 chr7 118952191 . A T 0 PASS DP=52;GPV=1;SPV=7.2318e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:10,4:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3442 chr7 119014250 . G GTA 0 PASS DP=25;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:4,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3443 chr7 119221565 . A AT 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3444 chr7 119839161 . C G 0 PASS DP=57;GPV=1;SPV=0.00019536;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,7:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3445 chr7 120768774 . AAAAG A 0 PASS DP=37;GPV=1;SPV=0.041809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,6:6,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3446 chr7 122150366 . C T 0 PASS DP=45;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:1,3:1,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3447 chr7 125349432 . GTA G 0 PASS DP=52;GPV=1;SPV=0.00057944;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:7,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3448 chr7 126019610 . A T 0 PASS DP=55;GPV=1;SPV=0.0015164;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3449 chr7 127483685 . AATAT A 0 PASS DP=25;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:8,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3450 chr7 128512979 . C CTTTTT 0 PASS DP=41;GPV=1;SPV=0.0064613;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3451 chr7 129033906 . C CA 0 PASS DP=28;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:9,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3452 chr7 130626708 . C A 0 PASS DP=70;GPV=1;SPV=4.237e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:11,3:8,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3453 chr7 130940445 . CAAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3454 chr7 131444745 . TAGTAGTAGTAGTAGA T 0 PASS DP=37;GPV=1;SPV=0.011679;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,3:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3455 chr7 131868548 . A T 0 PASS DP=34;GPV=1;SPV=0.0044739;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:3,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3456 chr7 132711346 . T TGAGAGAGAGA 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3457 chr7 133076058 . CA C 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:6,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3458 chr7 133397331 . T C 0 PASS DP=53;GPV=1;SPV=1.7738e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:5,7:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3459 chr7 133649465 . T TTTTTTC 0 PASS DP=44;GPV=1;SPV=0.027357;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,5:8,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3460 chr7 133745729 . T C 0 PASS DP=30;GPV=1;SPV=0.019985;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,1:4,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3461 chr7 134527015 . C T 0 PASS DP=29;GPV=1;SPV=0.022876;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:0,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3462 chr7 136880046 . C CT 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3463 chr7 137023785 . T TGATA 0 PASS DP=61;GPV=1;SPV=0.024656;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,4:5,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3464 chr7 137324435 . T A 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3465 chr7 137640006 . G GT 0 PASS DP=44;GPV=1;SPV=0.0143;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3466 chr7 137696766 . A G 0 PASS DP=67;GPV=1;SPV=0.00022263;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:7,9:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3467 chr7 138654500 . G T 0 PASS DP=36;GPV=1;SPV=0.16176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:5,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3468 chr7 139110664 . TA T 0 PASS DP=46;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,7:4,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3469 chr7 143767673 . G A 0 PASS DP=79;GPV=1;SPV=0.036975;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:17,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3470 chr7 144204888 . C T 0 PASS DP=207;GPV=1;SPV=0.044454;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:81,15:46,8:35,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3471 chr7 144362416 . C T 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3472 chr7 144530700 . C A 0 PASS DP=54;GPV=1;SPV=0.0012555;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:12,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3473 chr7 145746199 . A C 0 PASS DP=41;GPV=1;SPV=0.016594;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3474 chr7 146555527 . T G 0 PASS DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:22,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3475 chr7 147198955 . CT C 0 PASS DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:13,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3476 chr7 148283259 . G GA 0 PASS DP=18;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3477 chr7 149906416 . T C 0 PASS DP=20;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,2:0,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3478 chr7 149973119 . A G 0 PASS DP=64;GPV=1;SPV=0.049445;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:16,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3479 chr7 150041507 . A G 0 PASS DP=39;GPV=1;SPV=0.049123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,3:4,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3480 chr7 150158985 . A AGG 0 PASS DP=66;GPV=1;SPV=0.056165;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3481 chr7 150366215 . A G 0 PASS DP=59;GPV=1;SPV=1.944e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:7,7:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3482 chr7 150987805 . T A 0 PASS DP=60;GPV=1;SPV=0.27198;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:8,4:2,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3483 chr7 151443970 . A AT 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3484 chr7 152379913 . C G 0 PASS DP=180;GPV=1;SPV=0.0019945;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:75,13:42,5:33,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3485 chr7 152796880 . T G 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3486 chr7 153694853 . TAA T 0 PASS DP=29;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:6,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3487 chr7 156205191 . T G 0 PASS DP=34;GPV=1;SPV=0.19094;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3488 chr7 156886047 . G GA 0 PASS DP=29;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,8:0,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3489 chr7 157648793 . C T 0 PASS DP=29;GPV=1;SPV=0.13055;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3490 chr7 158152191 . A AAAAAAT 0 PASS DP=35;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,9:6,3:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3491 chr7 158720933 . T TA 0 PASS DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3492 chr7 158720943 . TA T 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:13,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3493 chr7 159195589 . CA C 0 PASS DP=34;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3494 chr8 200941 . G T 0 PASS DP=54;GPV=1;SPV=0.0041252;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3495 chr8 933541 . T C 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3496 chr8 1690703 . C CAAAAAA 0 PASS DP=23;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3497 chr8 2446587 . G A 0 PASS DP=83;GPV=1;SPV=0.033154;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:20,4:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3498 chr8 3262190 . T A 0 PASS DP=36;GPV=1;SPV=0.023173;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3499 chr8 3308731 . A AATTT 0 PASS DP=22;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:1,3:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3500 chr8 3712438 . CAGACAGAG C 0 PASS DP=57;GPV=1;SPV=0.11312;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,5:13,4:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3501 chr8 4933931 . G C 0 PASS DP=35;GPV=1;SPV=0.011437;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:3,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3502 chr8 5038381 . AT A 0 PASS DP=49;GPV=1;SPV=0.0013537;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3503 chr8 6592821 . T A 0 PASS DP=32;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3504 chr8 6874118 . T TAC 0 PASS DP=40;GPV=1;SPV=0.023613;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3505 chr8 7280617 . T A 0 PASS DP=36;GPV=1;SPV=0.0063539;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3506 chr8 7388774 . A G 0 PASS DP=73;GPV=1;SPV=0.013586;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,4:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3507 chr8 7445427 . A G 0 PASS DP=121;GPV=1;SPV=0.042142;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:23,8:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3508 chr8 7590600 . C T 0 PASS DP=57;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:11,2:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3509 chr8 7741855 . G A 0 PASS DP=222;GPV=1;SPV=0.031602;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:83,19:28,9:55,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3510 chr8 7765543 . C A 0 PASS DP=357;GPV=1;SPV=0.03449;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:143,16:58,4:85,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3511 chr8 7767717 . T C 0 PASS DP=107;GPV=1;SPV=0.047471;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:7,1:35,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3512 chr8 7894605 . T C 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:18,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3513 chr8 7905079 . C G 0 PASS DP=26;GPV=1;SPV=0.0069996;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,7:0,1:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3514 chr8 7949368 . C G 0 PASS DP=25;GPV=1;SPV=0.0079095;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:4,1:1,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3515 chr8 8023753 . T G 0 PASS DP=325;GPV=1;SPV=0.0016451;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:129,36:55,19:74,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3516 chr8 8037828 . A G 0 PASS DP=37;GPV=1;SPV=0.058687;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:3,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3517 chr8 8068506 . G C 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3518 chr8 8074498 . A G 0 PASS DP=120;GPV=1;SPV=0.033059;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:49,8:22,1:27,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3519 chr8 8161332 . C A 0 PASS DP=123;GPV=1;SPV=0.032509;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:36,7:27,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3520 chr8 9398157 . C T 0 PASS DP=66;GPV=1;SPV=8.543e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:9,8:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3521 chr8 10219867 . T G 0 PASS DP=34;GPV=1;SPV=0.075059;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3522 chr8 10991891 . G A 0 PASS DP=61;GPV=1;SPV=0.0010554;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,3:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3523 chr8 11180735 . A T 0 PASS DP=49;GPV=1;SPV=0.0054457;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:8,6:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3524 chr8 12189987 . A G 0 PASS DP=30;GPV=1;SPV=0.030651;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3525 chr8 12449811 . A ATG 0 PASS DP=120;GPV=1;SPV=0.03999;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:41,13:24,11:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3526 chr8 12483538 . C A 0 PASS DP=119;GPV=1;SPV=0.011673;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,14:22,9:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3527 chr8 12495803 . C T 0 PASS DP=129;GPV=1;SPV=0.046457;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:49,13:27,10:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3528 chr8 12497170 . T C 0 PASS DP=19;GPV=1;SPV=0.11538;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:1,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3529 chr8 12501192 . G A 0 PASS DP=36;GPV=1;SPV=0.057585;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3530 chr8 12509931 . C T 0 PASS DP=24;GPV=1;SPV=0.10145;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3531 chr8 12516289 . A C 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,0:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3532 chr8 12552262 . A G 0 PASS DP=215;GPV=1;SPV=0.033288;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:86,18:44,14:42,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3533 chr8 12577813 . T C 0 PASS DP=209;GPV=1;SPV=0.0068415;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:82,25:37,10:45,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3534 chr8 12577823 . A G 0 PASS DP=217;GPV=1;SPV=0.0026385;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:88,20:36,13:52,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3535 chr8 12584810 . G A 0 PASS DP=202;GPV=1;SPV=0.012888;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:84,19:44,12:40,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3536 chr8 12588896 . T C 0 PASS DP=206;GPV=1;SPV=0.03851;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:90,17:42,9:48,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3537 chr8 12594078 . A C 0 PASS DP=171;GPV=1;SPV=0.010693;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:70,18:41,9:29,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3538 chr8 12596034 . TC T 0 PASS DP=198;GPV=1;SPV=0.016696;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:77,18:39,9:38,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3539 chr8 12884712 . A AACACACACACAC 0 PASS DP=35;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,7:3,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3540 chr8 13753701 . C T 0 PASS DP=53;GPV=1;SPV=0.00017105;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:2,6:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3541 chr8 13935838 . A AT 0 PASS DP=46;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,8:3,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3542 chr8 15558792 . A G 0 PASS DP=49;GPV=1;SPV=0.0094436;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:8,10:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3543 chr8 15923495 . C A 0 PASS DP=31;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,3:4,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3544 chr8 16926818 . A ATGTAT 0 PASS DP=27;GPV=1;SPV=0.00387;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,4:1,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3545 chr8 18271057 . G A 0 PASS DP=49;GPV=1;SPV=0.0013228;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:11,7:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3546 chr8 18991373 . T TACAC 0 PASS DP=32;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,5:0,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3547 chr8 19666793 . AAGAAAGAAAGAAAGAAAGAGAG A 0 PASS DP=29;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3548 chr8 20199604 . GT G 0 PASS DP=45;GPV=1;SPV=0.012394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:14,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3549 chr8 20516661 . A G 0 PASS DP=31;GPV=1;SPV=0.092308;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,4:3,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3550 chr8 20936544 . C CAAAAAAAAAAA 0 PASS DP=17;GPV=1;SPV=0.014985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3551 chr8 22106419 . CAAA C 0 PASS DP=32;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3552 chr8 22649850 . C T 0 PASS DP=49;GPV=1;SPV=0.0094041;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,5:9,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3553 chr8 22765825 . T C 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3554 chr8 23876294 . G A 0 PASS DP=20;GPV=1;SPV=0.0055944;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,6:0,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3555 chr8 24758151 . G A 0 PASS DP=64;GPV=1;SPV=1.3892e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:5,6:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3556 chr8 24924432 . T C 0 PASS DP=64;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:0,2:0,0:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3557 chr8 26618315 . C CT 0 PASS DP=47;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:5,2:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3558 chr8 27021715 . T C 0 PASS DP=37;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3559 chr8 32366679 . A G 0 PASS DP=29;GPV=1;SPV=0.12587;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:2,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3560 chr8 33433611 . C CA 0 PASS DP=38;GPV=1;SPV=0.0011632;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:2,8:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3561 chr8 34993484 . T A 0 PASS DP=52;GPV=1;SPV=4.6796e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:3,4:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3562 chr8 35551220 . G A 0 PASS DP=59;GPV=1;SPV=0.0029872;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3563 chr8 35864646 . T TAC 0 PASS DP=20;GPV=1;SPV=0.028571;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,4:0,1:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3564 chr8 36225747 . CA C 0 PASS DP=36;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3565 chr8 37657098 . TAC T 0 PASS DP=43;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,10:4,6:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3566 chr8 38148813 . C T 0 PASS DP=53;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:30:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3567 chr8 41504120 . T TAAA 0 PASS DP=51;GPV=1;SPV=0.0093361;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,12:13,9:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3568 chr8 43972750 . G A 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3569 chr8 44142988 . T C 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:0,2:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3570 chr8 44211094 . C T 0 PASS DP=43;GPV=1;SPV=0.10777;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:12,2:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3571 chr8 45086951 . A T 0 PASS DP=28;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:1,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3572 chr8 46208097 . C G 0 PASS DP=68;GPV=1;SPV=5.5231e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,7:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3573 chr8 46279883 . A T 0 PASS DP=61;GPV=1;SPV=0.0011018;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3574 chr8 46673421 . T TA 0 PASS DP=62;GPV=1;SPV=8.275e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:9,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3575 chr8 47015050 . CAAAAAAAAAAAAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:5,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3576 chr8 47648800 . G A 0 PASS DP=66;GPV=1;SPV=3.4255e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:10,7:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3577 chr8 50961698 . C CT 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3578 chr8 52963543 . T TG 0 PASS DP=60;GPV=1;SPV=0.0076838;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,12:11,9:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3579 chr8 54239104 . C T 0 PASS DP=56;GPV=1;SPV=0.00036687;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:10,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3580 chr8 54547199 . C A 0 PASS DP=65;GPV=1;SPV=1.4566e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:11,8:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3581 chr8 55755593 . T C 0 PASS DP=42;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3582 chr8 55801582 . C CT 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3583 chr8 56285203 . CA C 0 PASS DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3584 chr8 57159303 . T TGACA 0 PASS DP=31;GPV=1;SPV=0.15499;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3585 chr8 57261742 . T TG 0 PASS DP=23;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:4,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3586 chr8 59389650 . A AACACAC 0 PASS DP=45;GPV=1;SPV=0.01441;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,7:7,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3587 chr8 60425281 . C A 0 PASS DP=72;GPV=1;SPV=0.0003586;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3588 chr8 62385634 . C T 0 PASS DP=65;GPV=1;SPV=0.0048347;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:12,1:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3589 chr8 62465619 . C A 0 PASS DP=62;GPV=1;SPV=3.4904e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:8,7:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3590 chr8 62870770 . T G 0 PASS DP=17;GPV=1;SPV=0.00041135;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,9:0,3:0,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3591 chr8 63080732 . A T 0 PASS DP=49;GPV=1;SPV=0.0095174;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:15,3:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3592 chr8 63285041 . TTCC T 0 PASS DP=49;GPV=1;SPV=0.11761;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:4,2:23,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3593 chr8 63937992 . A G 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:5,5:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3594 chr8 64396808 . C CT 0 PASS DP=34;GPV=1;SPV=0.018404;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3595 chr8 65126348 . A G 0 PASS DP=31;GPV=1;SPV=0.025213;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3596 chr8 66867551 . AAAT A 0 PASS DP=46;GPV=1;SPV=0.033718;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,3:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3597 chr8 67218207 . A AAATAT 0 PASS DP=35;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,5:2,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3598 chr8 69444882 . A T 0 PASS DP=57;GPV=1;SPV=0.14256;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3599 chr8 69931130 . C T 0 PASS DP=63;GPV=1;SPV=1.3365e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,18:5,11:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3600 chr8 70378743 . T TAA 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3601 chr8 71208737 . GA G 0 PASS DP=40;GPV=1;SPV=0.0062663;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:7,7:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3602 chr8 72249868 . T A 0 PASS DP=46;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,4:1,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3603 chr8 73106573 . G A 0 PASS DP=72;GPV=1;SPV=8.2714e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:8,3:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3604 chr8 73256869 . C A 0 PASS DP=32;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,2:2,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3605 chr8 73699451 . G T 0 PASS DP=61;GPV=1;SPV=3.3207e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,20:12,8:2,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3606 chr8 74230754 . C CAAAA 0 PASS DP=42;GPV=1;SPV=0.013657;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,6:5,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3607 chr8 75916038 . A G 0 PASS DP=59;GPV=1;SPV=0.012836;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:7,8:3,3:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3608 chr8 76140882 . G A 0 PASS DP=77;GPV=1;SPV=0.00025084;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:17,8:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3609 chr8 77040107 . C T 0 PASS DP=49;GPV=1;SPV=0.076832;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:6,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3610 chr8 77040108 . A G 0 PASS DP=50;GPV=1;SPV=0.059705;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3611 chr8 78843814 . C CA 0 PASS DP=36;GPV=1;SPV=0.13093;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:12,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3612 chr8 80127839 . G C 0 PASS DP=40;GPV=1;SPV=0.022489;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,7:3,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3613 chr8 80329468 . T C 0 PASS DP=44;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,4:5,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3614 chr8 82396759 . A C 0 PASS DP=63;GPV=1;SPV=1.1081e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:10,9:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3615 chr8 83820094 . C T 0 PASS DP=53;GPV=1;SPV=0.00011224;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:5,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3616 chr8 83945783 . CAA C 0 PASS DP=32;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:5,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3617 chr8 83949234 . C T 0 PASS DP=53;GPV=1;SPV=0.00070506;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,7:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3618 chr8 83959734 . G GCA 0 PASS DP=42;GPV=1;SPV=0.03809;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,7:16,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3619 chr8 84903683 . T C 0 PASS DP=74;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:11,7:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3620 chr8 85653042 . C G 0 PASS DP=307;GPV=1;SPV=0.0084042;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:127,31:62,12:65,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3621 chr8 86362063 . C CAT 0 PASS DP=23;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:3,2:1,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3622 chr8 88456275 . G A 0 PASS DP=61;GPV=1;SPV=1.7463e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,9:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3623 chr8 89751607 . A G 0 PASS DP=44;GPV=1;SPV=0.034681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3624 chr8 90070865 . T A 0 PASS DP=59;GPV=1;SPV=0.14511;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,1:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3625 chr8 90100331 . AT A 0 PASS DP=55;GPV=1;SPV=0.002101;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:6,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3626 chr8 90522683 . G T 0 PASS DP=63;GPV=1;SPV=0.0011083;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:9,5:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3627 chr8 92042938 . T G 0 PASS DP=65;GPV=1;SPV=1.5662e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:9,11:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3628 chr8 92569374 . C T 0 PASS DP=61;GPV=1;SPV=0.00024975;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:12,1:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3629 chr8 92626183 . GT G 0 PASS DP=33;GPV=1;SPV=0.025213;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:6,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3630 chr8 93281553 . T A 0 PASS DP=67;GPV=1;SPV=8.1991e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:16,22:8,12:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3631 chr8 97123152 . T A 0 PASS DP=41;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,3:13,2:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3632 chr8 97347890 . C T 0 PASS DP=63;GPV=1;SPV=5.2542e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3633 chr8 97621742 . TAAAAAA T 0 PASS DP=26;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3634 chr8 100093513 . C CA 0 PASS DP=60;GPV=1;SPV=0.00017406;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3635 chr8 100100291 . AT A 0 PASS DP=62;GPV=1;SPV=0.0053469;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:12,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3636 chr8 100493756 . C CT 0 PASS DP=41;GPV=1;SPV=0.05251;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,4:9,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3637 chr8 101124545 . C T 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,3:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3638 chr8 102528666 . G T 0 PASS DP=51;GPV=1;SPV=0.0066001;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3639 chr8 103992278 . T A 0 PASS DP=42;GPV=1;SPV=0.00014576;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,17:6,4:3,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3640 chr8 107192192 . T A 0 PASS DP=42;GPV=1;SPV=0.043286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3641 chr8 107551396 . G GTA 0 PASS DP=41;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:7,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3642 chr8 107551422 . G GTA 0 PASS DP=41;GPV=1;SPV=0.069853;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:10,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3643 chr8 108466442 . ATTTTT A 0 PASS DP=30;GPV=1;SPV=0.029349;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:8,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3644 chr8 109269251 . T G 0 PASS DP=65;GPV=1;SPV=0.0020965;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,7:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3645 chr8 110395508 . T A 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:13,1:23,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3646 chr8 110764485 . A C 0 PASS DP=35;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,3:2,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3647 chr8 110953462 . G T 0 PASS DP=44;GPV=1;SPV=0.0052889;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:11,4:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3648 chr8 111806622 . TC T 0 PASS DP=28;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,3:2,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3649 chr8 111833170 . T TTAGATAGATAGA 0 PASS DP=31;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,5:4,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3650 chr8 114796569 . C T 0 PASS DP=62;GPV=1;SPV=8.1682e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,5:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3651 chr8 117558717 . C CTGTGTG 0 PASS DP=43;GPV=1;SPV=0.015516;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3652 chr8 117563233 . CAA C 0 PASS DP=37;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:6,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3653 chr8 117748531 . C A 0 PASS DP=67;GPV=1;SPV=2.2591e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,7:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3654 chr8 118637996 . G A 0 PASS DP=67;GPV=1;SPV=7.3076e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:6,8:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3655 chr8 118840904 . G T 0 PASS DP=63;GPV=1;SPV=5.4752e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:7,6:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3656 chr8 122223529 . G T 0 PASS DP=52;GPV=1;SPV=0.0014372;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3657 chr8 123545013 . C CAA 0 PASS DP=25;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3658 chr8 123671946 . T C 0 PASS DP=45;GPV=1;SPV=0.00092217;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3659 chr8 124302600 . AATAT A 0 PASS DP=34;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:4,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3660 chr8 124302660 . AATAT A 0 PASS DP=32;GPV=1;SPV=0.22984;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:8,1:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3661 chr8 125911787 . C T 0 PASS DP=65;GPV=1;SPV=3.8653e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:7,7:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3662 chr8 127408101 . TATGG T 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3663 chr8 127408113 . T G 0 PASS DP=16;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,3:0,2:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3664 chr8 128952445 . A T 0 PASS DP=63;GPV=1;SPV=1.261e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:13,5:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3665 chr8 129184572 . AC A 0 PASS DP=34;GPV=1;SPV=0.0069381;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3666 chr8 129610157 . C T 0 PASS DP=47;GPV=1;SPV=0.02028;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:2,7:2,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3667 chr8 130758196 . CT C 0 PASS DP=40;GPV=1;SPV=0.006237;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:11,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3668 chr8 132154192 . AGTTTTTT A 0 PASS DP=25;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:1,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3669 chr8 132782895 . G A 0 PASS DP=57;GPV=1;SPV=1.3655e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:6,9:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3670 chr8 133395213 . CT C 0 PASS DP=34;GPV=1;SPV=0.021372;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3671 chr8 133928343 . T C 0 PASS DP=64;GPV=1;SPV=0.00017351;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:13,5:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3672 chr8 135058547 . G A 0 PASS DP=62;GPV=1;SPV=0.00041251;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:9,4:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3673 chr8 135117214 . A C 0 PASS DP=35;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3674 chr8 137335629 . CT C 0 PASS DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3675 chr8 137446909 . A G 0 PASS DP=57;GPV=1;SPV=0.00012301;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3676 chr8 137610924 . A ATT 0 PASS DP=53;GPV=1;SPV=0.0053956;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,8:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3677 chr8 137863580 . C T 0 PASS DP=46;GPV=1;SPV=4.9323e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:3,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3678 chr8 137905012 . G A 0 PASS DP=64;GPV=1;SPV=0.0014004;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:13,3:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3679 chr8 138281212 . T C 0 PASS DP=61;GPV=1;SPV=0.00010966;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:9,9:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3680 chr8 138314693 . C CAATAAATAAATAAATAAATA 0 PASS DP=21;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3681 chr8 138795528 . G GACACACACACAC 0 PASS DP=46;GPV=1;SPV=0.078276;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:13,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3682 chr8 139068153 . C CA 0 PASS DP=33;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,8:5,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3683 chr8 139223325 . CT C 0 PASS DP=47;GPV=1;SPV=0.00024036;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3684 chr8 139390449 . A AT 0 PASS DP=24;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:6,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3685 chr8 140225168 . C G 0 PASS DP=50;GPV=1;SPV=0.0027568;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:15,4:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3686 chr8 140283294 . C CTT 0 PASS DP=27;GPV=1;SPV=0.0045767;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:3,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3687 chr8 140448153 . A G 0 PASS DP=37;GPV=1;SPV=0.13408;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3688 chr8 141345359 . T TA 0 PASS DP=27;GPV=1;SPV=0.015942;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3689 chr8 142397036 . A C 0 PASS DP=28;GPV=1;SPV=0.087302;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:10,3:3,1:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3690 chr8 143287678 . T G 0 PASS DP=82;GPV=1;SPV=0.014981;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:16,1:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3691 chr8 143670217 . A C 0 PASS DP=68;GPV=1;SPV=4.8725e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:6,7:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3692 chr9 13621 . C T 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3693 chr9 55054 . A G 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,1:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3694 chr9 56883 . T C 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3695 chr9 60874 . C T 0 PASS DP=84;GPV=1;SPV=0.0054804;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:16,6:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3696 chr9 704992 . CAA C 0 PASS DP=31;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:6,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3697 chr9 4213079 . G C 0 PASS DP=67;GPV=1;SPV=1.3459e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:8,9:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3698 chr9 4270925 . GTGTGTGTGTA G 0 PASS DP=42;GPV=1;SPV=0.010459;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,1:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3699 chr9 5080727 . T G 0 PASS DP=57;GPV=1;SPV=4.0511e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,17:2,14:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3700 chr9 5626226 . A AT 0 PASS DP=51;GPV=1;SPV=0.00080386;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:3,6:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3701 chr9 6542885 . CA C 0 PASS DP=26;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3702 chr9 10511947 . CGT C 0 PASS DP=16;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,4:0,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3703 chr9 10875971 . C T 0 PASS DP=66;GPV=1;SPV=1.364e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:11,10:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3704 chr9 12799746 . C T 0 PASS DP=57;GPV=1;SPV=0.00012301;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,7:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3705 chr9 13925346 . G A 0 PASS DP=72;GPV=1;SPV=0.00023686;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3706 chr9 15664695 . T G 0 PASS DP=32;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,3:5,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3707 chr9 16059502 . TTTC T 0 PASS DP=35;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3708 chr9 16779114 . T TAA 0 PASS DP=37;GPV=1;SPV=0.016673;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3709 chr9 17668652 . A ATTTAT 0 PASS DP=52;GPV=1;SPV=0.01932;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:12,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3710 chr9 18238768 . T A 0 PASS DP=71;GPV=1;SPV=2.0388e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:11,9:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3711 chr9 18894345 . C CTTTTTTT 0 PASS DP=38;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:9,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3712 chr9 20545096 . CAAA C 0 PASS DP=30;GPV=1;SPV=0.014049;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3713 chr9 20974069 . T G 0 PASS DP=43;GPV=1;SPV=0.00092488;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:5,4:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3714 chr9 21565186 . C CAG 0 PASS DP=48;GPV=1;SPV=0.037638;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3715 chr9 23263748 . G A 0 PASS DP=63;GPV=1;SPV=2.4608e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:4,12:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3716 chr9 25102456 . G A 0 PASS DP=63;GPV=1;SPV=0.00072423;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:10,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3717 chr9 25241546 . T A 0 PASS DP=52;GPV=1;SPV=0.00042492;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3718 chr9 25760556 . CT C 0 PASS DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3719 chr9 26233976 . GT G 0 PASS DP=77;GPV=1;SPV=1.3574e-07;SS=2;SSC=68;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:11,13:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3720 chr9 27211204 . A AAT 0 PASS DP=50;GPV=1;SPV=0.018628;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3721 chr9 27380785 . T G 0 PASS DP=44;GPV=1;SPV=0.0013149;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:2,3:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3722 chr9 27635638 . CT C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3723 chr9 27797636 . AT A 0 PASS DP=46;GPV=1;SPV=0.018907;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,1:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3724 chr9 28297829 . A C 0 PASS DP=62;GPV=1;SPV=0.00049368;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,3:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3725 chr9 28498477 . C A 0 PASS DP=69;GPV=1;SPV=0.0028764;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:21,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3726 chr9 30467575 . A C 0 PASS DP=53;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:24:1,3:1,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3727 chr9 32360274 . A T 0 PASS DP=22;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3728 chr9 33157065 . C T 0 PASS DP=36;GPV=1;SPV=0.54545;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:1,1:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3729 chr9 33437246 . G T 0 PASS DP=47;GPV=1;SPV=0.0063848;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:6,4:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3730 chr9 33579951 . G A 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3731 chr9 35309222 . AGTGT A 0 PASS DP=44;GPV=1;SPV=0.0069323;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,10:3,8:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3732 chr9 36216327 . A ATGTGTGTGTGTGTGTGTG 0 PASS DP=24;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:5,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3733 chr9 38564762 . A G 0 PASS DP=57;GPV=1;SPV=0.0069576;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:15,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3734 chr9 38825196 . T C 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3735 chr9 38973013 . T G 0 PASS DP=62;GPV=1;SPV=0.040748;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:17,1:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3736 chr9 39038729 . T C 0 PASS DP=140;GPV=1;SPV=0.04207;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:60,14:37,3:23,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3737 chr9 39477841 . CAA C 0 PASS DP=57;GPV=1;SPV=0.025745;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:14,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3738 chr9 39790829 . G A 0 PASS DP=85;GPV=1;SPV=0.033111;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:1,8:33,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3739 chr9 39806065 . A G 0 PASS DP=64;GPV=1;SPV=0.040794;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:18,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3740 chr9 39811309 . T TA 0 PASS DP=145;GPV=1;SPV=0.03895;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:63,17:31,8:32,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3741 chr9 39817917 . A G 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:0,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3742 chr9 40141902 . T A 0 PASS DP=41;GPV=1;SPV=0.10773;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3743 chr9 40299040 . G A 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,3:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3744 chr9 40887604 . C A 0 PASS DP=81;GPV=1;SPV=0.002391;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:20,7:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3745 chr9 40984387 . A G 0 PASS DP=119;GPV=1;SPV=0.025831;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:51,7:26,5:25,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3746 chr9 41055190 . AAGG A 0 PASS DP=59;GPV=1;SPV=0.014823;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3747 chr9 41124566 . C G 0 PASS DP=70;GPV=1;SPV=0.0045001;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:17,7:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3748 chr9 41149757 . C T 0 PASS DP=79;GPV=1;SPV=0.034482;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:10,7:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3749 chr9 41294007 . G A 0 PASS DP=161;GPV=1;SPV=0.015832;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:69,14:29,3:40,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3750 chr9 41390057 . AT A 0 PASS DP=52;GPV=1;SPV=0.02769;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3751 chr9 41496485 . GAAAGGA G 0 PASS DP=78;GPV=1;SPV=0.034215;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,6:28,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3752 chr9 41527965 . C T 0 PASS DP=83;GPV=1;SPV=0.033733;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:17,5:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3753 chr9 41661484 . G A 0 PASS DP=43;GPV=1;SPV=0.071753;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3754 chr9 41770012 . C T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3755 chr9 41830987 . C T 0 PASS DP=188;GPV=1;SPV=0.012325;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:80,16:38,6:42,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3756 chr9 41940481 . A G 0 PASS DP=153;GPV=1;SPV=0.0032578;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:63,24:34,12:29,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3757 chr9 42027461 . T A 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:5,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3758 chr9 42286662 . G A 0 PASS DP=153;GPV=1;SPV=0.0019358;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:64,8:34,6:30,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3759 chr9 42534142 . G A 0 PASS DP=94;GPV=1;SPV=0.014968;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:15,4:19,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3760 chr9 42564238 . T C 0 PASS DP=20;GPV=1;SPV=0.014448;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3761 chr9 42990597 . C A 0 PASS DP=61;GPV=1;SPV=0.073271;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:16,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3762 chr9 43008955 . T C 0 PASS DP=70;GPV=1;SPV=0.099673;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:15,1:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3763 chr9 43398652 . C G 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:0,0:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3764 chr9 43450256 . C T 0 PASS DP=44;GPV=1;SPV=0.03569;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3765 chr9 43491159 . G T 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3766 chr9 43569176 . C A 0 PASS DP=68;GPV=1;SPV=0.033651;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:18,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3767 chr9 44012425 . G C 0 PASS DP=31;GPV=1;SPV=0.043382;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:4,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3768 chr9 44081441 . A T 0 PASS DP=73;GPV=1;SPV=0.01244;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:19,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3769 chr9 45015567 . C G 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3770 chr9 45173488 . C A 0 PASS DP=90;GPV=1;SPV=0.04859;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:38,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3771 chr9 60560821 . C A 0 PASS DP=43;GPV=1;SPV=0.037194;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:0,1:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3772 chr9 60655675 . A T 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3773 chr9 61534271 . A ATG 0 PASS DP=49;GPV=1;SPV=0.04269;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,1:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3774 chr9 61698971 . C CA 0 PASS DP=30;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:12,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3775 chr9 61972395 . G A 0 PASS DP=32;GPV=1;SPV=0.010479;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3776 chr9 62578345 . C G 0 PASS DP=82;GPV=1;SPV=0.033589;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:15,1:20,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3777 chr9 62804228 . G C 0 PASS DP=299;GPV=1;SPV=0.019582;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:132,16:52,4:80,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3778 chr9 62804246 . T C 0 PASS DP=310;GPV=1;SPV=0.010327;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:135,19:53,6:82,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3779 chr9 62805547 . C T 0 PASS DP=289;GPV=1;SPV=0.014771;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:115,22:63,12:52,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3780 chr9 62816131 . C G 0 PASS DP=215;GPV=1;SPV=0.014587;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:91,21:55,13:36,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3781 chr9 62832112 . C T 0 PASS DP=165;GPV=1;SPV=0.041377;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:63,14:41,9:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3782 chr9 62832215 . G T 0 PASS DP=284;GPV=1;SPV=0.033849;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:120,20:68,9:52,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3783 chr9 62832227 . A G 0 PASS DP=259;GPV=1;SPV=0.021249;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:114,20:62,10:52,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3784 chr9 62834514 . G A 0 PASS DP=350;GPV=1;SPV=0.027412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:176:156,20:79,7:77,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3785 chr9 63271325 . C T 0 PASS DP=45;GPV=1;SPV=0.0076269;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3786 chr9 63367584 . T C 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,1:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3787 chr9 63767558 . A C 0 PASS DP=71;GPV=1;SPV=0.049649;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:13,1:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3788 chr9 63794610 . A G 0 PASS DP=154;GPV=1;SPV=0.028344;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:64,10:35,9:29,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3789 chr9 63852085 . A G 0 PASS DP=244;GPV=1;SPV=0.033866;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:95,18:44,6:51,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3790 chr9 63875499 . C T 0 PASS DP=91;GPV=1;SPV=0.0026263;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:18,8:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3791 chr9 64054984 . T A 0 PASS DP=130;GPV=1;SPV=0.0023845;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:55,8:23,3:32,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3792 chr9 64364444 . C T 0 PASS DP=67;GPV=1;SPV=0.0031054;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:15,6:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3793 chr9 64375257 . T C 0 PASS DP=73;GPV=1;SPV=0.067818;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3794 chr9 64475776 . A G 0 PASS DP=32;GPV=1;SPV=0.050612;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3795 chr9 64543521 . C T 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3796 chr9 64724833 . AAAT A 0 PASS DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:13,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3797 chr9 65559995 . G C 0 PASS DP=63;GPV=1;SPV=0.035906;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:19,1:2,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3798 chr9 66058425 . G A 0 PASS DP=40;GPV=1;SPV=0.040008;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,2:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3799 chr9 66058712 . C A 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3800 chr9 66234321 . A G 0 PASS DP=43;GPV=1;SPV=0.022983;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,4:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3801 chr9 66246635 . C T 0 PASS DP=80;GPV=1;SPV=0.011389;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,2:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3802 chr9 66343510 . C G 0 PASS DP=61;GPV=1;SPV=0.045253;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:5,6:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3803 chr9 66374592 . T A 0 PASS DP=88;GPV=1;SPV=0.030284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:15,10:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3804 chr9 66817730 . G A 0 PASS DP=66;GPV=1;SPV=0.0088349;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:8,7:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3805 chr9 66942755 . G A 0 PASS DP=51;GPV=1;SPV=0.0082692;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3806 chr9 66949045 . T C 0 PASS DP=66;GPV=1;SPV=0.064347;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3807 chr9 66958756 . CAA C 0 PASS DP=32;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3808 chr9 67103214 . T G 0 PASS DP=41;GPV=1;SPV=0.0024876;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,13:6,2:6,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3809 chr9 67165889 . A G 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:2,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3810 chr9 67428816 . G GC 0 PASS DP=79;GPV=1;SPV=0.043261;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:22,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3811 chr9 67563763 . A C 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3812 chr9 67709320 . A C 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3813 chr9 67737196 . A G 0 PASS DP=101;GPV=1;SPV=0.010238;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:26,5:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3814 chr9 68265354 . T C 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,0:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3815 chr9 70008285 . A AGATAGATAGAT 0 PASS DP=73;GPV=1;SPV=0.020584;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,9:14,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3816 chr9 70792518 . A T 0 PASS DP=44;GPV=1;SPV=0.024248;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3817 chr9 72205110 . C CAA 0 PASS DP=32;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,9:2,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3818 chr9 72273869 . C CTCTGTG 0 PASS DP=41;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:5,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3819 chr9 77164452 . CT C 0 PASS DP=34;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:7,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3820 chr9 78715470 . A T 0 PASS DP=46;GPV=1;SPV=0.053922;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,5:1,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3821 chr9 79155809 . C T 0 PASS DP=57;GPV=1;SPV=7.6484e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,21:7,14:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3822 chr9 79835821 . C CA 0 PASS DP=27;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:3,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3823 chr9 79891930 . C T 0 PASS DP=62;GPV=1;SPV=0.013673;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:14,4:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3824 chr9 80561564 . A G 0 PASS DP=67;GPV=1;SPV=1.3459e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:10,10:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3825 chr9 80678615 . CAAAA C 0 PASS DP=21;GPV=1;SPV=0.0067079;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:2,8:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3826 chr9 80914871 . C T 0 PASS DP=57;GPV=1;SPV=0.00094384;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:12,4:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3827 chr9 80949038 . T TAC 0 PASS DP=33;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:8,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3828 chr9 81017936 . A T 0 PASS DP=62;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,4:6,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3829 chr9 82212576 . A G 0 PASS DP=47;GPV=1;SPV=9.6434e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:7,8:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3830 chr9 83350623 . C CA 0 PASS DP=32;GPV=1;SPV=0.011625;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:2,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3831 chr9 85248479 . ATG A 0 PASS DP=43;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3832 chr9 85612007 . C A 0 PASS DP=61;GPV=1;SPV=3.1184e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:5,6:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3833 chr9 85691522 . C CA 0 PASS DP=45;GPV=1;SPV=0.020538;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3834 chr9 86037438 . C CA 0 PASS DP=38;GPV=1;SPV=0.029984;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3835 chr9 86216454 . C CT 0 PASS DP=25;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3836 chr9 87387357 . T C 0 PASS DP=32;GPV=1;SPV=0.010876;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:6,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3837 chr9 88264218 . G C 0 PASS DP=23;GPV=1;SPV=0.24176;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:6,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3838 chr9 89182522 . A AAAAAT 0 PASS DP=52;GPV=1;SPV=0.035241;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3839 chr9 90541817 . TA T 0 PASS DP=48;GPV=1;SPV=0.0027337;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,11:5,4:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3840 chr9 91562181 . AAAGGAAGG A 0 PASS DP=35;GPV=1;SPV=0.024328;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3841 chr9 94308754 . TCAAAAAAAA T 0 PASS DP=20;GPV=1;SPV=0.16374;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3842 chr9 94452715 . ATATATATATAATAGATATTATATATAAATATC A 0 PASS DP=35;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3843 chr9 96284215 . TAAAAA T 0 PASS DP=27;GPV=1;SPV=0.00094923;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:3,6:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3844 chr9 96371474 . CAAAAAAAAAAAA C 0 PASS DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:1,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3845 chr9 96429027 . T TAC 0 PASS DP=35;GPV=1;SPV=0.015843;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3846 chr9 96603155 . G GAC 0 PASS DP=32;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3847 chr9 97743548 . C A 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3848 chr9 99195776 . AT A 0 PASS DP=27;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:5,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3849 chr9 99500142 . T C 0 PASS DP=52;GPV=1;SPV=0.044512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3850 chr9 103728043 . T A 0 PASS DP=69;GPV=1;SPV=6.2544e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:14,2:10,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3851 chr9 104045357 . A C 0 PASS DP=22;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,3:0,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3852 chr9 104690644 . C CA 0 PASS DP=33;GPV=1;SPV=0.1599;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3853 chr9 104696115 . G A 0 PASS DP=21;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,3:3,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3854 chr9 107242263 . A AAG 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3855 chr9 107641702 . C T 0 PASS DP=52;GPV=1;SPV=0.00033576;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3856 chr9 108095796 . C CT 0 PASS DP=21;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:6,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3857 chr9 108996155 . C T 0 PASS DP=41;GPV=1;SPV=0.0067968;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:9,5:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3858 chr9 109249721 . T A 0 PASS DP=64;GPV=1;SPV=0.0013464;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3859 chr9 109357854 . C CA 0 PASS DP=29;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:7,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3860 chr9 110313480 . C G 0 PASS DP=58;GPV=1;SPV=0.00037187;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:14,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3861 chr9 112320312 . A T 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3862 chr9 112448507 . TCTTTCTTTCTTTCCTC T 0 PASS DP=34;GPV=1;SPV=0.008898;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:3,5:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3863 chr9 113000950 . G A 0 PASS DP=53;GPV=1;SPV=0.0012203;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3864 chr9 113050469 . A C 0 PASS DP=50;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:32:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3865 chr9 113218379 . A T 0 PASS DP=44;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,5:3,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3866 chr9 115355012 . C A 0 PASS DP=43;GPV=1;SPV=0.00043396;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:4,9:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3867 chr9 116389810 . GT G 0 PASS DP=49;GPV=1;SPV=0.002854;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3868 chr9 116882828 . T TA 0 PASS DP=53;GPV=1;SPV=0.040404;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,4:7,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3869 chr9 117005080 . A ATTT 0 PASS DP=20;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3870 chr9 117134295 . TACACACACAC T 0 PASS DP=21;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,2:3,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3871 chr9 117187917 . C T 0 PASS DP=62;GPV=1;SPV=1.4083e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,6:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3872 chr9 117362368 . C CA 0 PASS DP=56;GPV=1;SPV=6.911e-06;SS=2;SSC=51;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:12,10:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3873 chr9 118141002 . A ATT 0 PASS DP=43;GPV=1;SPV=0.004773;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,6:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3874 chr9 120004935 . AT A 0 PASS DP=47;GPV=1;SPV=0.00080119;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3875 chr9 122606773 . ACCTAT A 0 PASS DP=52;GPV=1;SPV=0.19341;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3876 chr9 123395472 . G C 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:6,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3877 chr9 126697837 . C CTGTTT 0 PASS DP=58;GPV=1;SPV=0.020561;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:5,4:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3878 chr9 128598272 . C T 0 PASS DP=55;GPV=1;SPV=0.00068482;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:11,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3879 chr9 129575015 . G A 0 PASS DP=44;GPV=1;SPV=0.0053975;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:9,10:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3880 chr9 129659598 . TTGTGTGTG T 0 PASS DP=38;GPV=1;SPV=0.049808;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:7,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3881 chr9 130121181 . T TCAAAA 0 PASS DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3882 chr9 130123533 . T C 0 PASS DP=50;GPV=1;SPV=0.03148;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:7,3:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3883 chr9 131317261 . CT C 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:10,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3884 chr9 132172722 . A AT 0 PASS DP=32;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,6:12,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3885 chr9 132361988 . A AT 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3886 chr9 135730990 . T TAAA 0 PASS DP=43;GPV=1;SPV=0.0065226;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:2,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3887 chr9 136236902 . G C 0 PASS DP=42;GPV=1;SPV=0.012829;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:3,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3888 chrX 2857148 . ATCTATCTATCTAGACCTAGATG A 0 PASS DP=57;GPV=1;SPV=0.029045;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,2:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3889 chrX 3417799 . G A 0 PASS DP=64;GPV=1;SPV=0.00013223;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:15,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3890 chrX 5706845 . CTA C 0 PASS DP=50;GPV=1;SPV=0.028248;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3891 chrX 5740439 . C A 0 PASS DP=71;GPV=1;SPV=2.537e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:13,9:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3892 chrX 6313965 . G T 0 PASS DP=65;GPV=1;SPV=4.316e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:6,10:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3893 chrX 6352929 . CACACACACACATATATATAT C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3894 chrX 7716394 . A T 0 PASS DP=46;GPV=1;SPV=0.0018791;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3895 chrX 8960822 . A T 0 PASS DP=61;GPV=1;SPV=2.0941e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:11,7:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3896 chrX 9405116 . C G 0 PASS DP=103;GPV=1;SPV=0.039026;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:23,6:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3897 chrX 9413850 . G C 0 PASS DP=64;GPV=1;SPV=0.016724;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3898 chrX 9976423 . A G 0 PASS DP=33;GPV=1;SPV=0.0031242;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:8,13:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3899 chrX 10691809 . G A 0 PASS DP=57;GPV=1;SPV=0.077531;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:17,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3900 chrX 11656387 . G A 0 PASS DP=71;GPV=1;SPV=0.00011173;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,6:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3901 chrX 13128799 . G GTA 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3902 chrX 14487387 . TA T 0 PASS DP=25;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3903 chrX 14604543 . AGTGTGT A 0 PASS DP=20;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3904 chrX 14933447 . G A 0 PASS DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3905 chrX 15397163 . G T 0 PASS DP=70;GPV=1;SPV=7.1811e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,17:3,9:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3906 chrX 15675424 . TG T 0 PASS DP=67;GPV=1;SPV=0.051974;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:15,3:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3907 chrX 15742793 . G A 0 PASS DP=72;GPV=1;SPV=1.5776e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:10,8:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3908 chrX 15975953 . TTC T 0 PASS DP=24;GPV=1;SPV=0.0087495;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,3:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3909 chrX 18155664 . A C 0 PASS DP=38;GPV=1;SPV=0.031941;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3910 chrX 18550063 . G A 0 PASS DP=76;GPV=1;SPV=0.0025995;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:14,5:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3911 chrX 19634031 . G GGTGT 0 PASS DP=36;GPV=1;SPV=0.23867;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,3:12,2:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3912 chrX 20141814 . T A 0 PASS DP=72;GPV=1;SPV=3.7627e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:8,9:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3913 chrX 21235464 . G A 0 PASS DP=48;GPV=1;SPV=0.0030624;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:11,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3914 chrX 23065635 . A T 0 PASS DP=44;GPV=1;SPV=2.3891e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:3,6:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3915 chrX 23350060 . TAAAAAA T 0 PASS DP=34;GPV=1;SPV=0.001482;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,11:5,6:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3916 chrX 24741874 . A T 0 PASS DP=49;GPV=1;SPV=8.5672e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:9,4:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3917 chrX 25466850 . G A 0 PASS DP=71;GPV=1;SPV=9.6055e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,7:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3918 chrX 25998490 . G GCACACACACACACACACA 0 PASS DP=47;GPV=1;SPV=0.010459;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,7:6,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3919 chrX 26792298 . CT C 0 PASS DP=25;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,8:5,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3920 chrX 26870981 . C G 0 PASS DP=45;GPV=1;SPV=0.0022747;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:13,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3921 chrX 29218352 . AT A 0 PASS DP=64;GPV=1;SPV=0.00024436;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,2:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3922 chrX 31588872 . GT G 0 PASS DP=40;GPV=1;SPV=0.0009828;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3923 chrX 31748518 . T A 0 PASS DP=51;GPV=1;SPV=5.2411e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:6,6:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3924 chrX 32592107 . C G 0 PASS DP=72;GPV=1;SPV=4.2654e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:11,9:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3925 chrX 32710937 . A T 0 PASS DP=62;GPV=1;SPV=1.3982e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,23:5,6:7,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3926 chrX 33062862 . C A 0 PASS DP=68;GPV=1;SPV=6.5751e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:5,5:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3927 chrX 33129325 . CTTTTTTTTTTTT C 0 PASS DP=20;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:1,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3928 chrX 33908153 . A G 0 PASS DP=52;GPV=1;SPV=3.1587e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:9,9:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3929 chrX 35405459 . C T 0 PASS DP=54;GPV=1;SPV=0.0049024;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3930 chrX 35678154 . AT A 0 PASS DP=54;GPV=1;SPV=0.003791;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:10,4:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3931 chrX 39563033 . C G 0 PASS DP=49;GPV=1;SPV=0.0060979;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3932 chrX 39733942 . AGGAT A 0 PASS DP=47;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3933 chrX 41648794 . CT C 0 PASS DP=60;GPV=1;SPV=1.1718e-05;SS=2;SSC=49;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:7,5:11,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3934 chrX 42022824 . CT C 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3935 chrX 43589283 . TA T 0 PASS DP=35;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3936 chrX 44852267 . A AT 0 PASS DP=43;GPV=1;SPV=0.043286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3937 chrX 45220178 . T TA 0 PASS DP=41;GPV=1;SPV=0.16358;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:17,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3938 chrX 47856048 . CAAAAA C 0 PASS DP=21;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,6:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3939 chrX 48091469 . A G 0 PASS DP=42;GPV=1;SPV=0.045818;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3940 chrX 48096043 . G GAAA 0 PASS DP=69;GPV=1;SPV=0.026017;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:10,8:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3941 chrX 49341543 . C T 0 PASS DP=331;GPV=1;SPV=0.018877;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:149,20:98,12:51,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3942 chrX 50149916 . G A 0 PASS DP=48;GPV=1;SPV=0.018761;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3943 chrX 51225373 . G T 0 PASS DP=69;GPV=1;SPV=0.0018697;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:19,8:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3944 chrX 53010524 . A C 0 PASS DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3945 chrX 53181137 . T A 0 PASS DP=61;GPV=1;SPV=0.0046664;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:10,4:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3946 chrX 53507860 . C T 0 PASS DP=30;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,2:0,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3947 chrX 53721402 . G A 0 PASS DP=66;GPV=1;SPV=0.0014171;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:16,8:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3948 chrX 55101106 . G A 0 PASS DP=53;GPV=1;SPV=5.9904e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:8,6:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3949 chrX 55597620 . CA C 0 PASS DP=40;GPV=1;SPV=0.015939;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:7,6:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3950 chrX 55614666 . A ATATATATATATCCTT 0 PASS DP=36;GPV=1;SPV=0.030651;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:5,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3951 chrX 57038082 . GA G 0 PASS DP=46;GPV=1;SPV=0.022121;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:5,5:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3952 chrX 57306724 . GTGTGTGTA G 0 PASS DP=33;GPV=1;SPV=0.025586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:1,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3953 chrX 63643360 . C CT 0 PASS DP=46;GPV=1;SPV=0.0037582;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:8,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3954 chrX 65566646 . G GT 0 PASS DP=46;GPV=1;SPV=0.010777;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:12,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3955 chrX 67184170 . G A 0 PASS DP=48;GPV=1;SPV=0.13094;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,7:7,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3956 chrX 67415469 . T C 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3957 chrX 67422657 . GT G 0 PASS DP=35;GPV=1;SPV=0.14184;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3958 chrX 68650782 . C CAAACAAAACA 0 PASS DP=41;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,6:9,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3959 chrX 69898419 . C CA 0 PASS DP=59;GPV=1;SPV=0.0026031;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:12,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3960 chrX 70338953 . C T 0 PASS DP=47;GPV=1;SPV=0.049645;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3961 chrX 70577735 . CT C 0 PASS DP=31;GPV=1;SPV=1.6121e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,11:2,8:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3962 chrX 70632121 . G GAA 0 PASS DP=35;GPV=1;SPV=0.19805;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:12,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3963 chrX 71364171 . G GA 0 PASS DP=50;GPV=1;SPV=0.054928;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:14,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3964 chrX 72057396 . A G 0 PASS DP=82;GPV=1;SPV=0.0093175;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:18,3:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3965 chrX 74070376 . TAAATA T 0 PASS DP=36;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3966 chrX 74388455 . C G 0 PASS DP=57;GPV=1;SPV=7.0663e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:4,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3967 chrX 75728930 . C T 0 PASS DP=53;GPV=1;SPV=0.0066036;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3968 chrX 76106112 . G A 0 PASS DP=61;GPV=1;SPV=3.2339e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:8,6:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3969 chrX 77073595 . T A 0 PASS DP=80;GPV=1;SPV=8.7225e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:20,25:14,14:6,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3970 chrX 78965898 . CT C 0 PASS DP=37;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:6,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3971 chrX 82488047 . GA G 0 PASS DP=42;GPV=1;SPV=0.0006592;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,4:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3972 chrX 84591550 . G T 0 PASS DP=66;GPV=1;SPV=5.8565e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:6,9:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3973 chrX 85642275 . C A 0 PASS DP=60;GPV=1;SPV=0.00010095;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:8,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3974 chrX 86113285 . GATTT G 0 PASS DP=53;GPV=1;SPV=0.0432;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3975 chrX 86140667 . C CA 0 PASS DP=38;GPV=1;SPV=0.0011868;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:4,8:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3976 chrX 87211070 . TTCCTTCCTTCC T 0 PASS DP=35;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:3,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3977 chrX 87234171 . T A 0 PASS DP=34;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,6:6,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3978 chrX 87912589 . A C 0 PASS DP=63;GPV=1;SPV=0.00080253;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:11,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3979 chrX 89202018 . T C 0 PASS DP=27;GPV=1;SPV=0.00087495;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,9:2,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3980 chrX 89202024 . C T 0 PASS DP=26;GPV=1;SPV=0.0035042;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:3,9:1,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3981 chrX 89597156 . CTTTTTTTTTTT C 0 PASS DP=23;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:2,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3982 chrX 89900161 . T C 0 PASS DP=37;GPV=1;SPV=0.12189;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3983 chrX 89900371 . G A 0 PASS DP=39;GPV=1;SPV=0.21337;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3984 chrX 89905042 . T C 0 PASS DP=25;GPV=1;SPV=0.0055336;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:0,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3985 chrX 90159408 . T C 0 PASS DP=44;GPV=1;SPV=0.0076872;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:9,1:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3986 chrX 90179343 . G A 0 PASS DP=28;GPV=1;SPV=0.0045549;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3987 chrX 90315318 . T G 0 PASS DP=71;GPV=1;SPV=2.7786e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:11,9:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3988 chrX 90824432 . G A 0 PASS DP=51;GPV=1;SPV=0.0056817;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3989 chrX 91215008 . CT C 0 PASS DP=37;GPV=1;SPV=0.1016;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:13,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3990 chrX 91710886 . C A 0 PASS DP=52;GPV=1;SPV=0.00012397;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,3:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3991 chrX 92578105 . A G 0 PASS DP=49;GPV=1;SPV=0.016596;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:6,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3992 chrX 93344490 . T G 0 PASS DP=53;GPV=1;SPV=0.010126;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:13,5:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3993 chrX 96082566 . T G 0 PASS DP=16;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3994 chrX 96105973 . CAAA C 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3995 chrX 97129145 . T C 0 PASS DP=50;GPV=1;SPV=0.049139;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:7,3:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3996 chrX 97129146 . C T 0 PASS DP=38;GPV=1;SPV=0.036782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:2,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3997 chrX 101318824 . T G 0 PASS DP=34;GPV=1;SPV=0.064935;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3998 chrX 103136865 . AT A 0 PASS DP=56;GPV=1;SPV=0.040844;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3999 chrX 104310937 . A T 0 PASS DP=65;GPV=1;SPV=0.00021607;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,6:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4000 chrX 104465952 . A G 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:4,6:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4001 chrX 106356782 . C A 0 PASS DP=77;GPV=1;SPV=1.9388e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:8,8:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4002 chrX 107235832 . A G 0 PASS DP=65;GPV=1;SPV=2.3992e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,6:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4003 chrX 108656846 . T C 0 PASS DP=58;GPV=1;SPV=3.7952e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:10,10:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4004 chrX 109064210 . C A 0 PASS DP=27;GPV=1;SPV=0.092437;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:2,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4005 chrX 109201859 . G A 0 PASS DP=63;GPV=1;SPV=0.00034703;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:11,1:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4006 chrX 109245103 . C T 0 PASS DP=52;GPV=1;SPV=1.4033e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,16:6,8:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4007 chrX 112713503 . C CAT 0 PASS DP=35;GPV=1;SPV=0.011437;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4008 chrX 112740421 . A AAAG 0 PASS DP=29;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:11,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4009 chrX 112954507 . TC T 0 PASS DP=25;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:1,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4010 chrX 113025085 . A G 0 PASS DP=20;GPV=1;SPV=0.037926;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4011 chrX 113339159 . T G 0 PASS DP=33;GPV=1;SPV=0.010716;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,3:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4012 chrX 114387168 . A T 0 PASS DP=34;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:7,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4013 chrX 114387169 . T G 0 PASS DP=33;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,4:6,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4014 chrX 114387198 . G T 0 PASS DP=30;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:8,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4015 chrX 115895510 . A AT 0 PASS DP=30;GPV=1;SPV=0.0078247;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:3,8:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4016 chrX 116771502 . G T 0 PASS DP=66;GPV=1;SPV=0.00014241;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:7,7:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4017 chrX 117424521 . A ATG 0 PASS DP=50;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4018 chrX 117582261 . G T 0 PASS DP=67;GPV=1;SPV=0.00052875;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,5:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4019 chrX 118072252 . G C 0 PASS DP=60;GPV=1;SPV=0.041988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4020 chrX 119058281 . CTT C 0 PASS DP=21;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4021 chrX 119615883 . G A 0 PASS DP=62;GPV=1;SPV=0.00015402;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,8:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4022 chrX 121762835 . C T 0 PASS DP=71;GPV=1;SPV=2.2826e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:12,7:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4023 chrX 122588930 . AT A 0 PASS DP=32;GPV=1;SPV=0.0030632;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:1,3:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4024 chrX 122846270 . A T 0 PASS DP=25;GPV=1;SPV=0.040724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:1,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4025 chrX 122937514 . A AT 0 PASS DP=59;GPV=1;SPV=0.10077;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:25,3:14,1:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4026 chrX 122945040 . C T 0 PASS DP=51;GPV=1;SPV=2.4323e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:5,6:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4027 chrX 123874694 . AT A 0 PASS DP=35;GPV=1;SPV=0.0032406;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:8,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4028 chrX 123937999 . G A 0 PASS DP=39;GPV=1;SPV=0.022502;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4029 chrX 123938000 . A G 0 PASS DP=60;GPV=1;SPV=0.019711;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:9,3:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4030 chrX 124025140 . G A 0 PASS DP=60;GPV=1;SPV=0.00061059;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,6:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4031 chrX 124088615 . C CT 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4032 chrX 124550761 . AT A 0 PASS DP=59;GPV=1;SPV=0.0026395;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:14,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4033 chrX 124592434 . GT G 0 PASS DP=38;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4034 chrX 126737139 . C T 0 PASS DP=70;GPV=1;SPV=5.1896e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:5,6:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4035 chrX 127815860 . C T 0 PASS DP=52;GPV=1;SPV=0.0040433;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:9,7:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4036 chrX 129924283 . C CT 0 PASS DP=30;GPV=1;SPV=0.016858;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:3,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4037 chrX 131499198 . T C 0 PASS DP=51;GPV=1;SPV=0.0003269;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:13,4:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4038 chrX 132811663 . A AACTT 0 PASS DP=25;GPV=1;SPV=0.027668;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4039 chrX 132923062 . C CA 0 PASS DP=40;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:10,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4040 chrX 134161309 . C G 0 PASS DP=55;GPV=1;SPV=0.021448;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4041 chrX 134452113 . GGA G 0 PASS DP=27;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,8:4,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4042 chrX 134503061 . C CT 0 PASS DP=55;GPV=1;SPV=0.0017056;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:11,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4043 chrX 135760399 . G A 0 PASS DP=164;GPV=1;SPV=0.036255;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:75,11:56,5:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4044 chrX 135975981 . C CA 0 PASS DP=21;GPV=1;SPV=0.11029;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4045 chrX 138530197 . A T 0 PASS DP=74;GPV=1;SPV=3.218e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:12,8:8,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4046 chrX 139667050 . G C 0 PASS DP=59;GPV=1;SPV=0.00010405;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4047 chrX 141171923 . T TA 0 PASS DP=45;GPV=1;SPV=0.0143;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4048 chrX 141576665 . T C 0 PASS DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,1:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4049 chrX 142607510 . TA T 0 PASS DP=48;GPV=1;SPV=0.014575;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:8,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4050 chrX 143003764 . C T 0 PASS DP=47;GPV=1;SPV=1.2376e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:4,7:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4051 chrX 143901303 . C T 0 PASS DP=64;GPV=1;SPV=0.00080797;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:13,9:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4052 chrX 144115647 . C T 0 PASS DP=61;GPV=1;SPV=9.3552e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,7:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4053 chrX 144115648 . C T 0 PASS DP=61;GPV=1;SPV=1.7463e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:10,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4054 chrX 144922972 . ATATATATT A 0 PASS DP=22;GPV=1;SPV=0.001935;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4055 chrX 145116759 . A AAAAC 0 PASS DP=46;GPV=1;SPV=0.020181;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,4:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4056 chrX 145944797 . C T 0 PASS DP=57;GPV=1;SPV=0.0013091;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:5,4:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4057 chrX 146120230 . G A 0 PASS DP=63;GPV=1;SPV=3.3183e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:6,4:13,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4058 chrX 146175122 . G C 0 PASS DP=69;GPV=1;SPV=2.481e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,5:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4059 chrX 146340931 . TCCTTTCC T 0 PASS DP=35;GPV=1;SPV=0.024337;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:5,1:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4060 chrX 146431808 . G A 0 PASS DP=60;GPV=1;SPV=0.0009678;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4061 chrX 147282283 . T C 0 PASS DP=48;GPV=1;SPV=0.023962;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4062 chrX 147282284 . G A 0 PASS DP=43;GPV=1;SPV=0.026903;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4063 chrX 148625000 . C CT 0 PASS DP=61;GPV=1;SPV=0.023954;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:15,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4064 chrX 151449467 . G A 0 PASS DP=46;GPV=1;SPV=0.091614;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4065 chrX 151750280 . GA G 0 PASS DP=40;GPV=1;SPV=0.0010749;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4066 chrX 152241307 . CTCAGGGG C 0 PASS DP=53;GPV=1;SPV=0.0088512;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,5:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4067 chrX 152265933 . C T 0 PASS DP=57;GPV=1;SPV=7.0663e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,7:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4068 chrX 152698051 . A T 0 PASS DP=32;GPV=1;SPV=0.020486;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4069 chrX 153030841 . C T 0 PASS DP=73;GPV=1;SPV=0.0045929;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:16,2:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4070 chrX 153664066 . A AAAAAAAAAAC 0 PASS DP=25;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4071 chrX 153860467 . T TTTTCTTTCTTTC 0 PASS DP=39;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:5,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4072 chrX 153870995 . G A 0 PASS DP=56;GPV=1;SPV=0.0008665;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:8,5:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4073 chrX 155018031 . AT A 0 PASS DP=52;GPV=1;SPV=0.017896;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4074 chrX 155077239 . C T 0 PASS DP=66;GPV=1;SPV=2.0279e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:14,9:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4075 chrY 3749578 . G A 0 PASS DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4076 chrY 11109189 . C T 0 PASS DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4077 chrY 11136382 . T C 0 PASS DP=114;GPV=1;SPV=0.0018526;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:5,2:31,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4078 chrY 11186458 . A G 0 PASS DP=112;GPV=1;SPV=0.016106;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:26,6:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4079 chrY 11198115 . A T 0 PASS DP=162;GPV=1;SPV=0.010994;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:26,13:14,6:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4080 chrY 11198341 . G A 0 PASS DP=341;GPV=1;SPV=0.0070645;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:158,22:78,7:80,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4081 chrY 11200655 . G T 0 PASS DP=189;GPV=1;SPV=0.032837;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:77,14:44,7:33,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4082 chrY 11226998 . C T 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4083 chrY 11234720 . G A 0 PASS DP=36;GPV=1;SPV=0.013362;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4084 chrY 11240233 . T G 0 PASS DP=295;GPV=1;SPV=0.006285;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:119,29:57,9:62,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4085 chrY 11240847 . G A 0 PASS DP=255;GPV=1;SPV=0.027677;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:103,18:63,5:40,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4086 chrY 11251840 . A T 0 PASS DP=106;GPV=1;SPV=0.032756;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:20,8:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4087 chrY 11261967 . C T 0 PASS DP=298;GPV=1;SPV=0.042588;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:126,19:69,11:57,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4088 chrY 56837265 . G A 0 PASS DP=337;GPV=1;SPV=0.0027187;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:135,16:72,8:63,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4089 chrY 56866220 . T C 0 PASS DP=255;GPV=1;SPV=0.029132;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:88,22:35,4:53,18