Mercurial > repos > artbio > mutational_patterns

annotate test-data/I.vcf @ 21:8a5aaa97dbd6 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 91415d0273efacfc605199a8fbebaf421da9df7e"
author artbio
date Wed, 20 Oct 2021 17:38:25 +0000
parents aea952be68cb
children
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aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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1 ##fileformat=VCFv4.2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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2 ##FILTER=<ID=PASS,Description="All filters passed">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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3 ##reference=hg38
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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4 ##source=varscan.py
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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5 ##contig=<ID=chr1,length=248956422>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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6 ##contig=<ID=chr10,length=133797422>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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7 ##contig=<ID=chr11,length=135086622>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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8 ##contig=<ID=chr12,length=133275309>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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9 ##contig=<ID=chr13,length=114364328>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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10 ##contig=<ID=chr14,length=107043718>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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11 ##contig=<ID=chr15,length=101991189>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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12 ##contig=<ID=chr16,length=90338345>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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13 ##contig=<ID=chr17,length=83257441>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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14 ##contig=<ID=chr18,length=80373285>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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15 ##contig=<ID=chr19,length=58617616>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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16 ##contig=<ID=chr2,length=242193529>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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17 ##contig=<ID=chr20,length=64444167>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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18 ##contig=<ID=chr21,length=46709983>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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19 ##contig=<ID=chr22,length=50818468>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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20 ##contig=<ID=chr3,length=198295559>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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21 ##contig=<ID=chr4,length=190214555>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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22 ##contig=<ID=chr5,length=181538259>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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23 ##contig=<ID=chr6,length=170805979>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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24 ##contig=<ID=chr7,length=159345973>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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25 ##contig=<ID=chr8,length=145138636>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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26 ##contig=<ID=chr9,length=138394717>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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27 ##contig=<ID=chrM,length=16569>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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28 ##contig=<ID=chrX,length=156040895>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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29 ##contig=<ID=chrY,length=57227415>
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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30 ##filter="SOMATIC"
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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31 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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32 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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33 ##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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34 ##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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35 ##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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36 ##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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37 ##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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38 ##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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39 ##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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40 ##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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41 ##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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42 ##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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43 ##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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44 ##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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45 ##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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46 ##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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47 ##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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48 ##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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49 ##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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50 ##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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51 ##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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52 ##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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53 ##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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54 ##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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55 ##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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56 ##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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57 ##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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58 ##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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59 ##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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60 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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61 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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62 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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63 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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64 ##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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65 ##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand">
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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66 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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67 chr1 269731 . G T 0 PASS DP=55;GPV=1;SPV=0.016586;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:9,2:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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68 chr1 271443 . G T 0 PASS DP=64;GPV=1;SPV=0.0016182;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:15,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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69 chr1 1248267 . A AC 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:6,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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70 chr1 2020828 . A C 0 PASS DP=64;GPV=1;SPV=0.00080797;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:13,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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71 chr1 2085733 . C T 0 PASS DP=74;GPV=1;SPV=0.012493;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:16,2:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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72 chr1 2348700 . C T 0 PASS DP=52;GPV=1;SPV=0.0026931;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:5,6:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
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73 chr1 2366985 . T C 0 PASS DP=69;GPV=1;SPV=0.034197;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:13,3:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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74 chr1 2658795 . A T 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
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parents:
diff changeset
75 chr1 2672087 . G A 0 PASS DP=51;GPV=1;SPV=0.11845;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:12,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
76 chr1 3668055 . C A 0 PASS DP=54;GPV=1;SPV=0.00031346;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:10,5:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
77 chr1 4066911 . A ACT 0 PASS DP=24;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
78 chr1 4111429 . A C 0 PASS DP=70;GPV=1;SPV=0.0011142;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:14,6:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
79 chr1 4206589 . G A 0 PASS DP=72;GPV=1;SPV=0.00094617;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:17,7:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
80 chr1 6498731 . TACGGG T 0 PASS DP=75;GPV=1;SPV=0.00022147;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:13,4:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
81 chr1 8327243 . C A 0 PASS DP=68;GPV=1;SPV=7.8465e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:11,10:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
82 chr1 8556639 . A G 0 PASS DP=70;GPV=1;SPV=0.000154;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
83 chr1 9108397 . G T 0 PASS DP=65;GPV=1;SPV=0.025922;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
84 chr1 10758330 . T C 0 PASS DP=35;GPV=1;SPV=0.081016;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:14,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
85 chr1 10791081 . C CA 0 PASS DP=47;GPV=1;SPV=0.034636;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:14,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
86 chr1 10964151 . G A 0 PASS DP=63;GPV=1;SPV=0.00022074;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,7:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
87 chr1 11877601 . C T 0 PASS DP=62;GPV=1;SPV=0.0019011;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:10,3:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
88 chr1 12888921 . T TCC 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
89 chr1 12938147 . C A 0 PASS DP=73;GPV=1;SPV=0.049083;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:15,1:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
90 chr1 13070264 . T C 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
91 chr1 13369246 . T C 0 PASS DP=66;GPV=1;SPV=0.045787;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:12,5:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
92 chr1 13597732 . G C 0 PASS DP=55;GPV=1;SPV=0.0010783;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:14,6:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
93 chr1 14557666 . G GTGTGGT 0 PASS DP=54;GPV=1;SPV=0.10745;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:14,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
94 chr1 14883334 . G A 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:2,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
95 chr1 15206627 . T TGTGTTTAGGAATCGGGTGAGTTTA 0 PASS DP=45;GPV=1;SPV=0.0062786;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:5,6:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
96 chr1 16180433 . A C 0 PASS DP=51;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
97 chr1 16356168 . C CT 0 PASS DP=33;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,2:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
98 chr1 16408869 . CAAA C 0 PASS DP=32;GPV=1;SPV=0.010143;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:7,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
99 chr1 16509718 . T A 0 PASS DP=128;GPV=1;SPV=0.026634;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:60,17:33,8:27,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
100 chr1 16509719 . C A 0 PASS DP=130;GPV=1;SPV=0.039535;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:59,17:32,8:27,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
101 chr1 16512994 . A G 0 PASS DP=119;GPV=1;SPV=0.0097219;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:46,17:19,8:27,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
102 chr1 16513547 . G A 0 PASS DP=216;GPV=1;SPV=0.044761;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:114,16:61,7:53,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
103 chr1 16513636 . C T 0 PASS DP=178;GPV=1;SPV=0.010031;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:80,22:43,10:37,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
104 chr1 16564382 . G C 0 PASS DP=264;GPV=1;SPV=0.037792;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:134,22:85,12:49,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
105 chr1 16601216 . C A 0 PASS DP=226;GPV=1;SPV=0.018555;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:103,26:39,14:64,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
106 chr1 16725350 . C T 0 PASS DP=273;GPV=1;SPV=0.0084694;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:130,27:60,9:70,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
107 chr1 16934842 . C T 0 PASS DP=62;GPV=1;SPV=0.34103;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:17,4:9,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
108 chr1 16947468 . C CAAT 0 PASS DP=94;GPV=1;SPV=0.041416;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:17,4:24,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
109 chr1 17357944 . A C 0 PASS DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:13,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
110 chr1 17444539 . T G 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,6:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
111 chr1 17524364 . T TACAC 0 PASS DP=27;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:3,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
112 chr1 18060769 . T A 0 PASS DP=43;GPV=1;SPV=0.034015;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,8:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
113 chr1 18273462 . C CTCTT 0 PASS DP=43;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:2,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
114 chr1 18474502 . G GTC 0 PASS DP=66;GPV=1;SPV=0.14244;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,5:16,3:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
115 chr1 20011131 . C CA 0 PASS DP=68;GPV=1;SPV=0.015316;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:9,8:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
116 chr1 20035496 . A C 0 PASS DP=68;GPV=1;SPV=0.00017262;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:12,7:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
117 chr1 20668564 . C A 0 PASS DP=78;GPV=1;SPV=5.9655e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:9,8:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
118 chr1 21214809 . C CT 0 PASS DP=40;GPV=1;SPV=0.00085614;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,15:5,11:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
119 chr1 22069170 . CTTTT C 0 PASS DP=27;GPV=1;SPV=0.0081269;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:2,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
120 chr1 23142700 . T C 0 PASS DP=33;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
121 chr1 23992096 . T TTTC 0 PASS DP=40;GPV=1;SPV=0.0016669;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:5,7:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
122 chr1 24017891 . T G 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
123 chr1 24196544 . A C 0 PASS DP=33;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
124 chr1 24553122 . T C 0 PASS DP=50;GPV=1;SPV=0.021038;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
125 chr1 27489252 . G A 0 PASS DP=27;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:2,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
126 chr1 27666312 . A AAT 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
127 chr1 28658736 . G A 0 PASS DP=51;GPV=1;SPV=0.022713;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
128 chr1 30487019 . C CAA 0 PASS DP=35;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,9:5,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
129 chr1 31251996 . C T 0 PASS DP=44;GPV=1;SPV=0.090497;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:3,4:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
130 chr1 31552470 . G A 0 PASS DP=74;GPV=1;SPV=0.00017822;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:19,10:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
131 chr1 32093399 . CT C 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
132 chr1 32753269 . G C 0 PASS DP=41;GPV=1;SPV=0.0057147;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:11,11:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
133 chr1 32976485 . A AACACACACAC 0 PASS DP=37;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:6,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
134 chr1 33052839 . T TG 0 PASS DP=61;GPV=1;SPV=0.064526;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:21,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
135 chr1 33052861 . T C 0 PASS DP=57;GPV=1;SPV=0.041383;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:16,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
136 chr1 33826414 . G T 0 PASS DP=57;GPV=1;SPV=0.001327;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,7:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
137 chr1 35015945 . CT C 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:6,9:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
138 chr1 36129412 . T TA 0 PASS DP=36;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
139 chr1 37078450 . T C 0 PASS DP=42;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
140 chr1 39941007 . C A 0 PASS DP=86;GPV=1;SPV=0.00031349;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:19,3:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
141 chr1 41301699 . C CT 0 PASS DP=40;GPV=1;SPV=0.014318;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
142 chr1 41506602 . T TG 0 PASS DP=47;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
143 chr1 42335809 . T G 0 PASS DP=58;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:2,2:0,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
144 chr1 42750999 . T C 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
145 chr1 43141270 . C G 0 PASS DP=61;GPV=1;SPV=0.00068429;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:10,7:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
146 chr1 43670556 . A ATTT 0 PASS DP=24;GPV=1;SPV=0.10577;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:3,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
147 chr1 44844402 . C T 0 PASS DP=45;GPV=1;SPV=0.016858;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,5:6,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
148 chr1 44913110 . A T 0 PASS DP=33;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:6,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
149 chr1 45750823 . G C 0 PASS DP=81;GPV=1;SPV=0.0014366;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:11,5:25,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
150 chr1 46241374 . G A 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:4,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
151 chr1 46501126 . C A 0 PASS DP=28;GPV=1;SPV=0.02037;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
152 chr1 47880999 . T C 0 PASS DP=63;GPV=1;SPV=0.00072376;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:20,8:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
153 chr1 48083307 . C CT 0 PASS DP=27;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
154 chr1 48383028 . G A 0 PASS DP=39;GPV=1;SPV=0.14022;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:6,1:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
155 chr1 50527811 . G GTCTCTC 0 PASS DP=43;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,6:9,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
156 chr1 51721990 . C T 0 PASS DP=71;GPV=1;SPV=0.0011981;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:16,10:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
157 chr1 53100726 . G A 0 PASS DP=44;GPV=1;SPV=0.077195;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,5:9,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
158 chr1 54235448 . ATTT A 0 PASS DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
159 chr1 54539667 . CTA C 0 PASS DP=55;GPV=1;SPV=0.021052;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:11,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
160 chr1 55252557 . C T 0 PASS DP=59;GPV=1;SPV=3.545e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:9,6:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
161 chr1 55420073 . C CT 0 PASS DP=31;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:10,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
162 chr1 56118818 . CAAATAAAATA C 0 PASS DP=47;GPV=1;SPV=0.014795;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,3:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
163 chr1 57153623 . GT G 0 PASS DP=72;GPV=1;SPV=0.077619;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:23,1:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
164 chr1 58373169 . C CTTT 0 PASS DP=27;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
165 chr1 58375665 . C T 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
166 chr1 58713853 . A AG 0 PASS DP=54;GPV=1;SPV=0.21475;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,4:12,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
167 chr1 60146729 . G GT 0 PASS DP=27;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
168 chr1 60858389 . GGTGTGTGTGTGT G 0 PASS DP=35;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,12:8,10:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
169 chr1 62125264 . C A 0 PASS DP=24;GPV=1;SPV=0.041958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
170 chr1 62324554 . G A 0 PASS DP=48;GPV=1;SPV=0.057396;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:20,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
171 chr1 62465482 . A T 0 PASS DP=67;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:4,2:1,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
172 chr1 64016839 . G A 0 PASS DP=46;GPV=1;SPV=0.040129;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:11,8:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
173 chr1 65472411 . A AACACACACACACACACACAC 0 PASS DP=38;GPV=1;SPV=0.12189;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:6,1:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
174 chr1 66130826 . C T 0 PASS DP=53;GPV=1;SPV=0.0063293;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
175 chr1 66675541 . C T 0 PASS DP=23;GPV=1;SPV=0.0024902;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,2:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
176 chr1 66892898 . A T 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
177 chr1 67205911 . C CTT 0 PASS DP=43;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,4:5,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
178 chr1 67299917 . C G 0 PASS DP=63;GPV=1;SPV=0.087902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:21,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
179 chr1 67337901 . T TA 0 PASS DP=44;GPV=1;SPV=0.030984;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,1:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
180 chr1 67446182 . C CA 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
181 chr1 68038858 . T G 0 PASS DP=44;GPV=1;SPV=0.014127;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:11,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
182 chr1 68705885 . C G 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
183 chr1 68705887 . G C 0 PASS DP=58;GPV=1;SPV=0.10931;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
184 chr1 69778971 . T TACACACAC 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
185 chr1 70264475 . CA C 0 PASS DP=29;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:3,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
186 chr1 70770214 . G A 0 PASS DP=56;GPV=1;SPV=0.00023235;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:11,6:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
187 chr1 70981320 . CTTCTTTCT C 0 PASS DP=33;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:0,1:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
188 chr1 71570644 . C CTTATTA 0 PASS DP=40;GPV=1;SPV=0.011427;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
189 chr1 72831384 . A T 0 PASS DP=67;GPV=1;SPV=0.00046753;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:11,4:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
190 chr1 73957635 . C T 0 PASS DP=68;GPV=1;SPV=0.010972;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:30,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
191 chr1 75795181 . CT C 0 PASS DP=25;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:5,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
192 chr1 75840369 . GGGACATGGATGAAATT G 0 PASS DP=48;GPV=1;SPV=0.037594;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
193 chr1 75878828 . GAA G 0 PASS DP=51;GPV=1;SPV=0.0020556;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,14:5,8:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
194 chr1 76123819 . G A 0 PASS DP=34;GPV=1;SPV=0.00039496;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,16:3,10:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
195 chr1 76202268 . A ATGTGTGTG 0 PASS DP=42;GPV=1;SPV=0.070566;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:11,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
196 chr1 76936953 . G GGCGTGTGTGTGTGTGT 0 PASS DP=25;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:6,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
197 chr1 77423219 . T TAA 0 PASS DP=28;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:2,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
198 chr1 78025354 . GA G 0 PASS DP=37;GPV=1;SPV=0.0013772;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,15:6,12:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
199 chr1 78400057 . A G 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
200 chr1 79093208 . C CTGTG 0 PASS DP=37;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,4:9,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
201 chr1 79919640 . A C 0 PASS DP=27;GPV=1;SPV=0.010374;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,3:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
202 chr1 80114791 . A AT 0 PASS DP=48;GPV=1;SPV=0.01018;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:13,6:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
203 chr1 81343072 . CT C 0 PASS DP=29;GPV=1;SPV=0.057118;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:4,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
204 chr1 81557460 . A AAAGAAAG 0 PASS DP=49;GPV=1;SPV=0.046752;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:7,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
205 chr1 82163900 . CAATA C 0 PASS DP=46;GPV=1;SPV=0.008557;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:6,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
206 chr1 83122032 . TTGTGTG T 0 PASS DP=28;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:7,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
207 chr1 83892925 . AAAG A 0 PASS DP=39;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,4:5,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
208 chr1 84508565 . G T 0 PASS DP=56;GPV=1;SPV=0.044393;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:18,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
209 chr1 85084250 . GTATA G 0 PASS DP=33;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:3,10:1,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
210 chr1 85996536 . T G 0 PASS DP=35;GPV=1;SPV=0.008646;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:4,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
211 chr1 88539041 . ATGTGTG A 0 PASS DP=18;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,4:1,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
212 chr1 90378989 . AC A 0 PASS DP=53;GPV=1;SPV=0.049659;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
213 chr1 90522609 . G GATAA 0 PASS DP=60;GPV=1;SPV=0.0008665;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,11:10,8:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
214 chr1 90826152 . G A 0 PASS DP=44;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,13:4,9:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
215 chr1 90826155 . T TACAC 0 PASS DP=38;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,9:4,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
216 chr1 90891794 . C CG 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:0,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
217 chr1 91929065 . G A 0 PASS DP=40;GPV=1;SPV=0.25989;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:10,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
218 chr1 91958214 . C CTTT 0 PASS DP=48;GPV=1;SPV=0.03148;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:5,5:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
219 chr1 92586588 . G GTT 0 PASS DP=25;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,8:2,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
220 chr1 96450604 . CAA C 0 PASS DP=38;GPV=1;SPV=0.12042;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,7:12,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
221 chr1 97342390 . C T 0 PASS DP=64;GPV=1;SPV=0.00051949;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
222 chr1 97735685 . CATAA C 0 PASS DP=43;GPV=1;SPV=0.040656;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
223 chr1 98255236 . A G 0 PASS DP=67;GPV=1;SPV=7.2707e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:10,6:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
224 chr1 98492648 . A AT 0 PASS DP=39;GPV=1;SPV=0.045397;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:12,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
225 chr1 98973303 . GGTAAATGTAGGGATTGACAGTAGGAAGAGAATACC G 0 PASS DP=51;GPV=1;SPV=0.036957;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:9,4:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
226 chr1 100843450 . T C 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
227 chr1 101521631 . C CGT 0 PASS DP=36;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:9,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
228 chr1 101814986 . A G 0 PASS DP=58;GPV=1;SPV=0.002513;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,4:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
229 chr1 102494919 . T C 0 PASS DP=67;GPV=1;SPV=0.027663;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:13,3:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
230 chr1 102839949 . GC G 0 PASS DP=74;GPV=1;SPV=5.174e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:9,6:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
231 chr1 103125344 . A T 0 PASS DP=41;GPV=1;SPV=0.029259;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:11,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
232 chr1 104209755 . A AT 0 PASS DP=20;GPV=1;SPV=0.015718;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:1,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
233 chr1 105484294 . GT G 0 PASS DP=47;GPV=1;SPV=0.00063127;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:5,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
234 chr1 106356046 . A G 0 PASS DP=62;GPV=1;SPV=0.0089499;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:13,3:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
235 chr1 107319867 . A T 0 PASS DP=52;GPV=1;SPV=0.029166;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:13,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
236 chr1 107813967 . AGT A 0 PASS DP=42;GPV=1;SPV=0.0070965;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,8:5,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
237 chr1 108970973 . T G 0 PASS DP=61;GPV=1;SPV=0.035079;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:17,1:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
238 chr1 109654189 . AG A 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
239 chr1 109654217 . G A 0 PASS DP=28;GPV=1;SPV=0.024318;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:11,7:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
240 chr1 110568000 . A T 0 PASS DP=65;GPV=1;SPV=0.0016408;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:17,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
241 chr1 110800558 . G A 0 PASS DP=57;GPV=1;SPV=0.00069928;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:10,4:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
242 chr1 111065378 . C CT 0 PASS DP=23;GPV=1;SPV=0.00095261;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,9:0,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
243 chr1 111760000 . T A 0 PASS DP=31;GPV=1;SPV=0.29181;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:5,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
244 chr1 112446195 . T TG 0 PASS DP=44;GPV=1;SPV=0.0095299;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,10:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
245 chr1 112839632 . CA C 0 PASS DP=30;GPV=1;SPV=0.0064568;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
246 chr1 112887304 . G GT 0 PASS DP=40;GPV=1;SPV=0.0012521;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,18:3,9:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
247 chr1 113329679 . G C 0 PASS DP=60;GPV=1;SPV=0.0084152;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,4:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
248 chr1 113416037 . TA T 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
249 chr1 113416042 . A ATG 0 PASS DP=40;GPV=1;SPV=0.099968;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:8,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
250 chr1 113826659 . AT A 0 PASS DP=23;GPV=1;SPV=0.0069323;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,3:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
251 chr1 114023627 . C T 0 PASS DP=48;GPV=1;SPV=0.0027946;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,3:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
252 chr1 114711520 . G A 0 PASS DP=48;GPV=1;SPV=0.0018005;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,6:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
253 chr1 115973951 . A C 0 PASS DP=48;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
254 chr1 116760187 . A T 0 PASS DP=55;GPV=1;SPV=0.0003213;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:8,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
255 chr1 118165645 . C CT 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
256 chr1 118318922 . ATAACATAGATATTATATATATAAC A 0 PASS DP=75;GPV=1;SPV=0.020516;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,11:14,3:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
257 chr1 118318948 . T C 0 PASS DP=81;GPV=1;SPV=0.026312;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:21,11:13,3:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
258 chr1 119480464 . G GGAAT 0 PASS DP=26;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
259 chr1 120133006 . T C 0 PASS DP=64;GPV=1;SPV=0.026923;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:11,6:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
260 chr1 120214625 . G A 0 PASS DP=39;GPV=1;SPV=0.041254;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
261 chr1 120223626 . G A 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
262 chr1 120449349 . A G 0 PASS DP=66;GPV=1;SPV=0.042184;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:14,1:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
263 chr1 120516328 . CTCGAACACCTGACCTCAGG C 0 PASS DP=55;GPV=1;SPV=0.00055646;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:5,4:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
264 chr1 120677169 . T A 0 PASS DP=30;GPV=1;SPV=0.034767;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
265 chr1 120808134 . A G 0 PASS DP=46;GPV=1;SPV=0.096745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,2:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
266 chr1 120813144 . G T 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
267 chr1 120933113 . G T 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
268 chr1 120999034 . T G 0 PASS DP=34;GPV=1;SPV=0.075059;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
269 chr1 121014916 . A C 0 PASS DP=27;GPV=1;SPV=0.021449;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:7,10:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
270 chr1 121142206 . G GTGTTGCATCTAATGCA 0 PASS DP=33;GPV=1;SPV=0.027219;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:11,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
271 chr1 121300216 . C A 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
272 chr1 121313677 . T A 0 PASS DP=27;GPV=1;SPV=0.015942;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
273 chr1 121632493 . G C 0 PASS DP=37;GPV=1;SPV=0.046332;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
274 chr1 121633993 . C A 0 PASS DP=78;GPV=1;SPV=0.061867;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:22,3:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
275 chr1 121724458 . C T 0 PASS DP=48;GPV=1;SPV=0.0047006;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:16,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
276 chr1 121746508 . G A 0 PASS DP=73;GPV=1;SPV=0.025099;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:5,1:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
277 chr1 121765204 . T C 0 PASS DP=128;GPV=1;SPV=0.021678;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:19,4:25,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
278 chr1 121825757 . T A 0 PASS DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,0:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
279 chr1 122055311 . C T 0 PASS DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
280 chr1 122126906 . T A 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
281 chr1 122130766 . A G 0 PASS DP=71;GPV=1;SPV=0.035683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:0,2:32,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
282 chr1 122382551 . T G 0 PASS DP=146;GPV=1;SPV=0.024134;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:77,10:45,7:32,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
283 chr1 122382585 . C G 0 PASS DP=151;GPV=1;SPV=0.012337;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:68,20:37,12:31,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
284 chr1 124517001 . C G 0 PASS DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:1,0:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
285 chr1 124704660 . G A 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:3,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
286 chr1 124803933 . A C 0 PASS DP=61;GPV=1;SPV=0.049719;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:18,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
287 chr1 124815480 . G C 0 PASS DP=34;GPV=1;SPV=0.024163;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:4,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
288 chr1 124819793 . A T 0 PASS DP=50;GPV=1;SPV=0.25578;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:17,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
289 chr1 124824574 . G C 0 PASS DP=63;GPV=1;SPV=0.062015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:26,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
290 chr1 124829879 . A G 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:2,0:23,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
291 chr1 124836421 . A T 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
292 chr1 124864443 . T G 0 PASS DP=77;GPV=1;SPV=0.034057;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:31,3:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
293 chr1 124872309 . G A 0 PASS DP=33;GPV=1;SPV=0.057743;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:4,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
294 chr1 125105666 . G C 0 PASS DP=194;GPV=1;SPV=0.027872;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:103,19:65,12:38,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
295 chr1 125115225 . A G 0 PASS DP=130;GPV=1;SPV=0.037748;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:60,7:43,6:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
296 chr1 125115420 . A AC 0 PASS DP=143;GPV=1;SPV=0.013226;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:70,10:27,4:43,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
297 chr1 125115460 . G A 0 PASS DP=145;GPV=1;SPV=0.016349;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:69,9:27,3:42,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
298 chr1 125145353 . G A 0 PASS DP=64;GPV=1;SPV=0.14384;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:15,2:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
299 chr1 125183528 . T C 0 PASS DP=13535;GPV=1;SPV=0.00028913;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7135:6347,761:6156,122:191,639
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
300 chr1 143186576 . G T 0 PASS DP=306;GPV=1;SPV=0.022409;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:159,19:107,15:52,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
301 chr1 143186698 . G C 0 PASS DP=380;GPV=1;SPV=0.016502;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:195,26:35,6:160,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
302 chr1 143199058 . A T 0 PASS DP=48;GPV=1;SPV=0.05461;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
303 chr1 143354257 . G A 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
304 chr1 143507941 . T C 0 PASS DP=54;GPV=1;SPV=0.075102;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:4,1:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
305 chr1 143691034 . G A 0 PASS DP=47;GPV=1;SPV=0.20161;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:22,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
306 chr1 143749592 . G A 0 PASS DP=59;GPV=1;SPV=0.0020871;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:7,4:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
307 chr1 143896059 . C T 0 PASS DP=65;GPV=1;SPV=0.039302;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:12,4:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
308 chr1 143899302 . C CAA 0 PASS DP=58;GPV=1;SPV=0.056683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:18,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
309 chr1 144322435 . C T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
310 chr1 144907343 . A T 0 PASS DP=56;GPV=1;SPV=0.0012456;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:13,7:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
311 chr1 145563251 . CATGGTGTA C 0 PASS DP=74;GPV=1;SPV=0.034945;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:14,6:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
312 chr1 145697763 . ATTTTTTT A 0 PASS DP=29;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
313 chr1 145731539 . G A 0 PASS DP=61;GPV=1;SPV=0.0035718;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,3:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
314 chr1 146008839 . C CA 0 PASS DP=32;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,7:5,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
315 chr1 146397037 . A G 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:7,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
316 chr1 146969025 . G A 0 PASS DP=62;GPV=1;SPV=0.049127;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
317 chr1 147096496 . A AATGTGTGTGTGTGTCTGTGT 0 PASS DP=33;GPV=1;SPV=0.13473;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:7,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
318 chr1 147548979 . C T 0 PASS DP=27;GPV=1;SPV=0.060606;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,6:1,2:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
319 chr1 148239973 . G A 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:9,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
320 chr1 148268790 . G A 0 PASS DP=20;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,5:0,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
321 chr1 148444677 . C A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
322 chr1 148651160 . AAAAT A 0 PASS DP=36;GPV=1;SPV=0.021701;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,6:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
323 chr1 148651164 . T A 0 PASS DP=32;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:3,3:0,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
324 chr1 148884876 . G A 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
325 chr1 148952338 . C A 0 PASS DP=81;GPV=1;SPV=0.06683;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:19,3:24,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
326 chr1 149080805 . T C 0 PASS DP=43;GPV=1;SPV=0.0098611;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
327 chr1 149110135 . C G 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
328 chr1 149142076 . TAC T 0 PASS DP=74;GPV=1;SPV=0.033332;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,7:18,6:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
329 chr1 149158930 . A G 0 PASS DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
330 chr1 149215311 . C T 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
331 chr1 149309405 . T A 0 PASS DP=55;GPV=1;SPV=0.16556;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,4:13,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
332 chr1 149874716 . G A 0 PASS DP=56;GPV=1;SPV=0.021894;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,4:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
333 chr1 150136771 . T TA 0 PASS DP=48;GPV=1;SPV=0.0061864;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
334 chr1 150781906 . G A 0 PASS DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
335 chr1 150905062 . CCA C 0 PASS DP=36;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,14:3,10:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
336 chr1 151660825 . G A 0 PASS DP=86;GPV=1;SPV=0.001135;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:22,6:21,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
337 chr1 151780257 . ATACTATCTATACAACCAGTCCTCAATTACTTTATATACAACCTCAGT A 0 PASS DP=39;GPV=1;SPV=0.073823;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
338 chr1 152156625 . A G 0 PASS DP=35;GPV=1;SPV=0.18237;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
339 chr1 152274875 . CT C 0 PASS DP=28;GPV=1;SPV=0.079329;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:4,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
340 chr1 153785086 . A AT 0 PASS DP=51;GPV=1;SPV=0.030558;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,14:13,9:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
341 chr1 154309581 . CATAT C 0 PASS DP=53;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,4:12,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
342 chr1 154322489 . C CTTCTTCTTCTT 0 PASS DP=31;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:2,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
343 chr1 154937273 . A G 0 PASS DP=105;GPV=1;SPV=0.003727;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:52,10:19,5:33,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
344 chr1 156640418 . T TC 0 PASS DP=60;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:7,6:2,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
345 chr1 157274150 . T C 0 PASS DP=31;GPV=1;SPV=0.057118;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:9,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
346 chr1 157300470 . CAT C 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
347 chr1 157760686 . A AGAAAGAAGGAAG 0 PASS DP=41;GPV=1;SPV=0.12919;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:13,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
348 chr1 159011398 . T A 0 PASS DP=62;GPV=1;SPV=0.25968;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:20,4:9,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
349 chr1 159021939 . CTTTTTTTTTTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
350 chr1 159256266 . A T 0 PASS DP=71;GPV=1;SPV=1.1925e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,22:10,9:15,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
351 chr1 160270143 . C CT 0 PASS DP=29;GPV=1;SPV=0.0096618;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
352 chr1 160984465 . AAT A 0 PASS DP=29;GPV=1;SPV=0.030104;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
353 chr1 161423696 . C T 0 PASS DP=63;GPV=1;SPV=0.0041082;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:18,12:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
354 chr1 161559730 . G A 0 PASS DP=93;GPV=1;SPV=0.012728;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:44,16:27,9:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
355 chr1 162108902 . C G 0 PASS DP=67;GPV=1;SPV=0.040006;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:22,4:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
356 chr1 162519003 . C A 0 PASS DP=58;GPV=1;SPV=0.0041602;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:10,8:4,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
357 chr1 162825846 . C T 0 PASS DP=60;GPV=1;SPV=0.00044723;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,5:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
358 chr1 163059160 . T TTATATATA 0 PASS DP=32;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
359 chr1 163547125 . C T 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
360 chr1 163758208 . C G 0 PASS DP=65;GPV=1;SPV=0.13498;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,1:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
361 chr1 164079940 . A T 0 PASS DP=74;GPV=1;SPV=0.020864;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:19,4:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
362 chr1 164563555 . T C 0 PASS DP=73;GPV=1;SPV=0.0028166;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:12,7:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
363 chr1 164773241 . G GCACACACACACA 0 PASS DP=57;GPV=1;SPV=0.049992;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:19,5:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
364 chr1 165139680 . C A 0 PASS DP=76;GPV=1;SPV=0.0077332;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:18,7:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
365 chr1 166038371 . G C 0 PASS DP=72;GPV=1;SPV=0.0014163;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:21,4:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
366 chr1 166318281 . AT A 0 PASS DP=73;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:18,4:9,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
367 chr1 166327704 . GGTCAGAGAACCT G 0 PASS DP=68;GPV=1;SPV=5.6653e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:25,17:12,7:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
368 chr1 166384348 . G A 0 PASS DP=76;GPV=1;SPV=5.3344e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:15,8:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
369 chr1 166464009 . TTA T 0 PASS DP=57;GPV=1;SPV=0.035929;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,12:14,6:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
370 chr1 166598336 . TA T 0 PASS DP=69;GPV=1;SPV=0.0044141;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:18,8:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
371 chr1 166887954 . CAA C 0 PASS DP=36;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,8:3,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
372 chr1 167044460 . C CTTTTTTTTTT 0 PASS DP=51;GPV=1;SPV=0.038102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
373 chr1 167177215 . C CT 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,0:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
374 chr1 167208546 . G GTT 0 PASS DP=36;GPV=1;SPV=0.014666;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,14:3,12:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
375 chr1 167773894 . TA T 0 PASS DP=57;GPV=1;SPV=0.18687;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:15,1:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
376 chr1 168100235 . G C 0 PASS DP=25;GPV=1;SPV=0.0070433;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:3,6:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
377 chr1 168306397 . G A 0 PASS DP=75;GPV=1;SPV=6.3626e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:13,12:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
378 chr1 169172356 . A G 0 PASS DP=62;GPV=1;SPV=0.052643;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:14,6:5,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
379 chr1 171658179 . G T 0 PASS DP=34;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,4:5,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
380 chr1 171658181 . G T 0 PASS DP=38;GPV=1;SPV=0.020047;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,9:5,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
381 chr1 174349693 . C T 0 PASS DP=42;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:9,1:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
382 chr1 174350131 . G C 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:13,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
383 chr1 175087657 . T A 0 PASS DP=77;GPV=1;SPV=0.0038636;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:40,14:18,6:22,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
384 chr1 175091559 . TTTTA T 0 PASS DP=53;GPV=1;SPV=0.17881;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
385 chr1 175426880 . TAAAATATA T 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
386 chr1 176049178 . CAAAAAAAAAA C 0 PASS DP=34;GPV=1;SPV=0.026877;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:8,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
387 chr1 176174007 . A G 0 PASS DP=35;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:9,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
388 chr1 176275360 . CAAA C 0 PASS DP=32;GPV=1;SPV=0.0040248;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,9:2,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
389 chr1 177867086 . A T 0 PASS DP=34;GPV=1;SPV=0.27357;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,5:9,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
390 chr1 178661607 . C A 0 PASS DP=51;GPV=1;SPV=0.024305;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,8:8,3:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
391 chr1 178673275 . A G 0 PASS DP=55;GPV=1;SPV=0.00051119;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,18:3,7:12,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
392 chr1 179541677 . TA T 0 PASS DP=48;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,5:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
393 chr1 180234012 . G A 0 PASS DP=43;GPV=1;SPV=0.00055105;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,17:2,6:9,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
394 chr1 180473446 . C CA 0 PASS DP=45;GPV=1;SPV=0.0053012;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,12:8,9:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
395 chr1 181034063 . A G 0 PASS DP=59;GPV=1;SPV=0.047407;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:11,1:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
396 chr1 181188527 . A AAAATAAATAAAT 0 PASS DP=45;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,10:4,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
397 chr1 181590418 . T A 0 PASS DP=40;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,5:3,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
398 chr1 182075278 . G A 0 PASS DP=24;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:0,5:0,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
399 chr1 182295503 . GA G 0 PASS DP=53;GPV=1;SPV=0.070174;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:16,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
400 chr1 182295508 . A G 0 PASS DP=55;GPV=1;SPV=0.10837;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:18,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
401 chr1 182299870 . G GGA 0 PASS DP=46;GPV=1;SPV=0.010097;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,12:14,8:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
402 chr1 182476052 . T A 0 PASS DP=59;GPV=1;SPV=0.11505;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
403 chr1 182936130 . GT G 0 PASS DP=45;GPV=1;SPV=0.043687;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:13,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
404 chr1 182946992 . T C 0 PASS DP=60;GPV=1;SPV=0.065169;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:16,2:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
405 chr1 183236390 . A C 0 PASS DP=39;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:1,3:0,0:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
406 chr1 183446701 . T A 0 PASS DP=62;GPV=1;SPV=3.0659e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,19:10,10:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
407 chr1 183776141 . AT A 0 PASS DP=41;GPV=1;SPV=0.051203;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:14,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
408 chr1 184936021 . G GA 0 PASS DP=46;GPV=1;SPV=0.033449;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,12:10,9:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
409 chr1 185431986 . G GTCC 0 PASS DP=80;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:24,4:9,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
410 chr1 186064809 . C CA 0 PASS DP=42;GPV=1;SPV=0.0127;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,8:8,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
411 chr1 187432871 . T TGTATATATATATACAC 0 PASS DP=30;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:5,3:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
412 chr1 189093126 . C T 0 PASS DP=63;GPV=1;SPV=0.0278;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:21,2:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
413 chr1 189818494 . G A 0 PASS DP=28;GPV=1;SPV=0.064615;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
414 chr1 190317171 . C A 0 PASS DP=38;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,4:8,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
415 chr1 190848998 . T TATAGAG 0 PASS DP=53;GPV=1;SPV=0.03741;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:2,13:1,6:1,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
416 chr1 191373158 . CT C 0 PASS DP=35;GPV=1;SPV=0.29545;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,7:7,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
417 chr1 191597193 . TTA T 0 PASS DP=55;GPV=1;SPV=0.19365;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:19,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
418 chr1 191597196 . G A 0 PASS DP=56;GPV=1;SPV=0.1253;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,5:20,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
419 chr1 192098485 . G C 0 PASS DP=30;GPV=1;SPV=0.0098951;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,15:3,4:4,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
420 chr1 193564297 . T C 0 PASS DP=77;GPV=1;SPV=0.35726;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:18,4:7,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
421 chr1 194191688 . CTGTGTG C 0 PASS DP=47;GPV=1;SPV=0.045605;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:13,8:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
422 chr1 195143152 . G GA 0 PASS DP=40;GPV=1;SPV=0.059981;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:18,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
423 chr1 195286373 . C CTCTTTCTTTCTTTCTTTCTTTCTT 0 PASS DP=43;GPV=1;SPV=0.2092;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:6,2:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
424 chr1 196050116 . T C 0 PASS DP=75;GPV=1;SPV=0.078917;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:29,5:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
425 chr1 196692708 . TTTTC T 0 PASS DP=45;GPV=1;SPV=0.046254;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:10,1:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
426 chr1 196692716 . C G 0 PASS DP=43;GPV=1;SPV=0.048435;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:8,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
427 chr1 196759125 . T C 0 PASS DP=37;GPV=1;SPV=0.057896;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:14,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
428 chr1 196759861 . TTA T 0 PASS DP=87;GPV=1;SPV=0.023189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:42,15:18,3:24,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
429 chr1 196773670 . T A 0 PASS DP=51;GPV=1;SPV=0.32052;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
430 chr1 197305904 . A G 0 PASS DP=53;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
431 chr1 201702677 . T C 0 PASS DP=39;GPV=1;SPV=0.086046;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,8:8,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
432 chr1 202125153 . CAAA C 0 PASS DP=34;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:13,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
433 chr1 202205825 . AC A 0 PASS DP=47;GPV=1;SPV=0.002614;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,19:13,13:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
434 chr1 202205968 . CA C 0 PASS DP=65;GPV=1;SPV=0.12149;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:20,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
435 chr1 202799657 . C CA 0 PASS DP=52;GPV=1;SPV=0.003703;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:6,9:13,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
436 chr1 203544823 . CT C 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
437 chr1 203794717 . CTTT C 0 PASS DP=32;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:7,9:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
438 chr1 203815379 . C CT 0 PASS DP=34;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,8:7,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
439 chr1 204308691 . T C 0 PASS DP=32;GPV=1;SPV=0.027191;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:1,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
440 chr1 204699211 . T A 0 PASS DP=54;GPV=1;SPV=0.20807;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:12,4:23,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
441 chr1 205115043 . T G 0 PASS DP=75;GPV=1;SPV=0.0027236;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:13,5:22,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
442 chr1 205766586 . AC A 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
443 chr1 206249005 . T A 0 PASS DP=52;GPV=1;SPV=0.023333;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:10,5:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
444 chr1 206612949 . TA T 0 PASS DP=31;GPV=1;SPV=0.20158;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,5:9,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
445 chr1 207657873 . G T 0 PASS DP=71;GPV=1;SPV=0.00033391;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:17,6:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
446 chr1 208407255 . C CAAA 0 PASS DP=41;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,13:2,6:0,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
447 chr1 210191145 . G A 0 PASS DP=59;GPV=1;SPV=0.00022928;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,7:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
448 chr1 210217114 . AAG A 0 PASS DP=52;GPV=1;SPV=0.10706;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
449 chr1 210243093 . CAAAA C 0 PASS DP=34;GPV=1;SPV=0.010716;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:7,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
450 chr1 211222740 . C T 0 PASS DP=61;GPV=1;SPV=0.0040715;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:8,4:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
451 chr1 211535165 . T C 0 PASS DP=37;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
452 chr1 211906826 . A C 0 PASS DP=47;GPV=1;SPV=0.37028;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:11,1:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
453 chr1 212365429 . C CT 0 PASS DP=23;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
454 chr1 212796547 . G A 0 PASS DP=48;GPV=1;SPV=0.0037474;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:13,7:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
455 chr1 213046176 . ATTTTTTTTTTTT A 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:4,8:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
456 chr1 213063260 . C A 0 PASS DP=59;GPV=1;SPV=4.6521e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:9,5:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
457 chr1 213363749 . CTCTT C 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:1,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
458 chr1 213363813 . T C 0 PASS DP=35;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
459 chr1 213363815 . T C 0 PASS DP=37;GPV=1;SPV=0.013285;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:4,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
460 chr1 213440593 . T TAA 0 PASS DP=35;GPV=1;SPV=0.0065417;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:8,6:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
461 chr1 213651244 . C T 0 PASS DP=61;GPV=1;SPV=0.0040715;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:17,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
462 chr1 215133964 . A C 0 PASS DP=54;GPV=1;SPV=0.0026644;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:6,7:11,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
463 chr1 215192766 . T A 0 PASS DP=59;GPV=1;SPV=0.017844;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:13,4:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
464 chr1 215391843 . A G 0 PASS DP=73;GPV=1;SPV=4.6905e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:21,29:13,14:8,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
465 chr1 216135134 . ACTCT A 0 PASS DP=32;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:9,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
466 chr1 216169734 . T A 0 PASS DP=73;GPV=1;SPV=0.0028525;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:19,3:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
467 chr1 216439725 . CT C 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
468 chr1 218145450 . G GTGTATATATATA 0 PASS DP=21;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
469 chr1 219170348 . G A 0 PASS DP=50;GPV=1;SPV=0.13055;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,5:7,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
470 chr1 219470415 . T TCTATCTATCTATCTATCTATCTATCTATCTAC 0 PASS DP=26;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,6:1,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
471 chr1 219749979 . C CTT 0 PASS DP=18;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:4,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
472 chr1 219927681 . A C 0 PASS DP=42;GPV=1;SPV=0.017327;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,8:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
473 chr1 221766455 . T TGTGA 0 PASS DP=47;GPV=1;SPV=0.010098;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,6:8,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
474 chr1 221918739 . ATATATATAT A 0 PASS DP=25;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
475 chr1 222488773 . CG C 0 PASS DP=107;GPV=1;SPV=0.022703;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:56,7:46,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
476 chr1 223117579 . A G 0 PASS DP=55;GPV=1;SPV=0.19365;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,2:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
477 chr1 223937919 . C T 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
478 chr1 223986360 . C CTAACTAA 0 PASS DP=43;GPV=1;SPV=0.19246;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
479 chr1 224128983 . C CAA 0 PASS DP=41;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,8:7,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
480 chr1 224276911 . TTGACACATAAAACTAGTTTTA T 0 PASS DP=42;GPV=1;SPV=0.094902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
481 chr1 224913826 . A ATGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=26;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:3,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
482 chr1 225440291 . C CT 0 PASS DP=32;GPV=1;SPV=0.018626;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
483 chr1 226169715 . AC A 0 PASS DP=49;GPV=1;SPV=0.16972;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
484 chr1 227709976 . G GT 0 PASS DP=23;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
485 chr1 227959215 . A AT 0 PASS DP=42;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,7:5,5:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
486 chr1 229215269 . T C 0 PASS DP=55;GPV=1;SPV=7.167e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:5,8:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
487 chr1 229421349 . CTT C 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:5,7:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
488 chr1 230354076 . T A 0 PASS DP=74;GPV=1;SPV=0.0089367;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:19,3:20,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
489 chr1 230580340 . CTTTTT C 0 PASS DP=30;GPV=1;SPV=0.36477;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:11,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
490 chr1 230830594 . T G 0 PASS DP=36;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
491 chr1 233729238 . G A 0 PASS DP=50;GPV=1;SPV=0.0013699;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:9,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
492 chr1 234334671 . A T 0 PASS DP=57;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:1,4:0,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
493 chr1 234342591 . T TTAGATAGA 0 PASS DP=50;GPV=1;SPV=0.037288;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
494 chr1 234699282 . G A 0 PASS DP=23;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
495 chr1 234789878 . A C 0 PASS DP=96;GPV=1;SPV=0.01554;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:19,9:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
496 chr1 234995623 . ATG A 0 PASS DP=61;GPV=1;SPV=0.028928;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:15,6:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
497 chr1 234995802 . TGTATATATAG T 0 PASS DP=55;GPV=1;SPV=0.02651;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:10,2:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
498 chr1 235788804 . C T 0 PASS DP=71;GPV=1;SPV=0.0022122;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:12,4:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
499 chr1 236669073 . T TTTCCTTCC 0 PASS DP=35;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:5,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
500 chr1 237077437 . T C 0 PASS DP=72;GPV=1;SPV=0.010714;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:11,6:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
501 chr1 237180692 . A G 0 PASS DP=56;GPV=1;SPV=0.28876;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,4:10,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
502 chr1 237208940 . A G 0 PASS DP=16;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:2,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
503 chr1 237451972 . GTGTGTGTA G 0 PASS DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:6,5:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
504 chr1 237584647 . C CTGTTTTT 0 PASS DP=21;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:3,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
505 chr1 238337592 . C T 0 PASS DP=39;GPV=1;SPV=0.054281;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
506 chr1 238837481 . G C 0 PASS DP=61;GPV=1;SPV=0.060295;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
507 chr1 239959448 . G A 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
508 chr1 241483294 . A AT 0 PASS DP=38;GPV=1;SPV=0.023323;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,5:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
509 chr1 242385979 . C A 0 PASS DP=53;GPV=1;SPV=0.0035067;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:14,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
510 chr1 242475277 . G C 0 PASS DP=68;GPV=1;SPV=1.0723e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:23,21:12,10:11,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
511 chr1 242996654 . G A 0 PASS DP=44;GPV=1;SPV=0.024218;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
512 chr1 243039650 . T TAA 0 PASS DP=59;GPV=1;SPV=0.16219;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
513 chr1 243275856 . GT G 0 PASS DP=27;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:11,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
514 chr1 244876110 . CA C 0 PASS DP=24;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:6,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
515 chr1 246288062 . CTTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:3,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
516 chr1 246787147 . A T 0 PASS DP=43;GPV=1;SPV=0.010741;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
517 chr1 247439061 . A T 0 PASS DP=47;GPV=1;SPV=0.035086;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:15,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
518 chr1 248005651 . A G 0 PASS DP=58;GPV=1;SPV=0.025917;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
519 chr1 248084006 . A C 0 PASS DP=78;GPV=1;SPV=0.045183;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:22,7:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
520 chr10 479328 . C CTT 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
521 chr10 1672704 . C G 0 PASS DP=38;GPV=1;SPV=0.037811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,5:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
522 chr10 2723863 . C T 0 PASS DP=60;GPV=1;SPV=0.011827;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:15,3:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
523 chr10 3458378 . A T 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
524 chr10 3466719 . G GTA 0 PASS DP=52;GPV=1;SPV=0.016109;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,12:11,8:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
525 chr10 3957167 . T TTTATTATTA 0 PASS DP=33;GPV=1;SPV=0.010479;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:8,6:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
526 chr10 4308075 . CT C 0 PASS DP=30;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:4,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
527 chr10 4802231 . A G 0 PASS DP=68;GPV=1;SPV=0.012987;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:35:1,5:1,1:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
528 chr10 5047200 . G C 0 PASS DP=63;GPV=1;SPV=0.008739;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:19,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
529 chr10 5957593 . C CT 0 PASS DP=32;GPV=1;SPV=0.10134;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
530 chr10 6392542 . C A 0 PASS DP=52;GPV=1;SPV=0.0035931;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:13,2:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
531 chr10 6707263 . T TATCC 0 PASS DP=44;GPV=1;SPV=0.00037514;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,11:3,6:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
532 chr10 7817849 . GTTT G 0 PASS DP=30;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:7,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
533 chr10 7994977 . GA G 0 PASS DP=29;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:6,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
534 chr10 8007562 . TTATATATATATA T 0 PASS DP=23;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:3,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
535 chr10 8335904 . C CAA 0 PASS DP=29;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:8,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
536 chr10 9656343 . A G 0 PASS DP=52;GPV=1;SPV=0.044512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:14,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
537 chr10 10005606 . C A 0 PASS DP=36;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
538 chr10 10747900 . T C 0 PASS DP=46;GPV=1;SPV=0.010322;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:4,8:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
539 chr10 11446557 . C T 0 PASS DP=44;GPV=1;SPV=0.0060788;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:7,4:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
540 chr10 11876574 . T TTGTGTG 0 PASS DP=47;GPV=1;SPV=0.0060349;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:1,7:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
541 chr10 12330746 . T C 0 PASS DP=28;GPV=1;SPV=0.003663;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,10:1,7:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
542 chr10 12408848 . C CT 0 PASS DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
543 chr10 12413570 . T TTGC 0 PASS DP=28;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:6,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
544 chr10 12538885 . C CA 0 PASS DP=24;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:2,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
545 chr10 12801333 . C CT 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
546 chr10 12889075 . C T 0 PASS DP=61;GPV=1;SPV=0.049052;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:15,4:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
547 chr10 12929264 . A C 0 PASS DP=45;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
548 chr10 13908164 . T TA 0 PASS DP=26;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
549 chr10 14373925 . A ATTTT 0 PASS DP=44;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,11:3,2:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
550 chr10 15644122 . A T 0 PASS DP=60;GPV=1;SPV=0.0040413;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,5:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
551 chr10 16533321 . A AT 0 PASS DP=67;GPV=1;SPV=0.00075779;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,9:17,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
552 chr10 17102252 . C CTTAT 0 PASS DP=40;GPV=1;SPV=0.014064;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
553 chr10 17774798 . T TTCTCTCTC 0 PASS DP=19;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,7:2,3:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
554 chr10 19563250 . A T 0 PASS DP=55;GPV=1;SPV=0.021448;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
555 chr10 19748703 . C T 0 PASS DP=65;GPV=1;SPV=3.8037e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:14,5:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
556 chr10 20140405 . A AAATATCTATCTATC 0 PASS DP=36;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,8:4,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
557 chr10 20721458 . G GT 0 PASS DP=46;GPV=1;SPV=0.0053523;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,8:8,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
558 chr10 21048697 . T A 0 PASS DP=60;GPV=1;SPV=0.0017392;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
559 chr10 21325974 . C T 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
560 chr10 21325977 . TA T 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
561 chr10 21405648 . C CA 0 PASS DP=48;GPV=1;SPV=0.052629;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,5:19,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
562 chr10 21871118 . C G 0 PASS DP=64;GPV=1;SPV=0.00038475;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,4:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
563 chr10 21883251 . A AACACAC 0 PASS DP=43;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,9:5,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
564 chr10 23064079 . G T 0 PASS DP=69;GPV=1;SPV=0.0013903;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:18,5:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
565 chr10 23527144 . C G 0 PASS DP=67;GPV=1;SPV=9.1723e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:12,8:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
566 chr10 23824646 . A T 0 PASS DP=31;GPV=1;SPV=0.00065258;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
567 chr10 23943175 . A G 0 PASS DP=50;GPV=1;SPV=0.0041352;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:10,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
568 chr10 23943176 . G T 0 PASS DP=47;GPV=1;SPV=0.012535;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:11,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
569 chr10 26473999 . CA C 0 PASS DP=33;GPV=1;SPV=0.023692;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
570 chr10 26727342 . T C 0 PASS DP=38;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:2,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
571 chr10 27443463 . A G 0 PASS DP=41;GPV=1;SPV=0.007525;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,4:9,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
572 chr10 27630080 . C A 0 PASS DP=40;GPV=1;SPV=0.0035533;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:4,8:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
573 chr10 28310020 . T TTTTTTTA 0 PASS DP=38;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,9:7,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
574 chr10 29258674 . AG A 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
575 chr10 29907575 . C T 0 PASS DP=32;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:4,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
576 chr10 30167116 . CATTT C 0 PASS DP=49;GPV=1;SPV=0.0015096;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:8,15:4,11:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
577 chr10 30706505 . CT C 0 PASS DP=33;GPV=1;SPV=0.044477;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:1,0:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
578 chr10 30715886 . A G 0 PASS DP=26;GPV=1;SPV=0.014757;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:4,2:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
579 chr10 30824000 . G T 0 PASS DP=66;GPV=1;SPV=3.4893e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:7,10:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
580 chr10 32946749 . TG T 0 PASS DP=17;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
581 chr10 33043272 . T TATATACA 0 PASS DP=23;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,5:2,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
582 chr10 33071607 . T G 0 PASS DP=45;GPV=1;SPV=0.066077;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:8,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
583 chr10 37040798 . G C 0 PASS DP=64;GPV=1;SPV=0.0023764;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:15,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
584 chr10 37556436 . G C 0 PASS DP=71;GPV=1;SPV=0.00033391;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:12,3:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
585 chr10 37632113 . GA G 0 PASS DP=51;GPV=1;SPV=0.00024945;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:7,10:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
586 chr10 37748973 . A ATCTCTCTC 0 PASS DP=37;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
587 chr10 38180750 . A ATTT 0 PASS DP=42;GPV=1;SPV=0.094639;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:10,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
588 chr10 38438433 . TAA T 0 PASS DP=56;GPV=1;SPV=0.072845;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:20,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
589 chr10 38528669 . T C 0 PASS DP=475;GPV=1;SPV=0.0039538;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:263:218,45:100,21:118,24
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
590 chr10 38652470 . T G 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:17,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
591 chr10 38665946 . G A 0 PASS DP=87;GPV=1;SPV=0.040315;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:30,2:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
592 chr10 38744008 . AAAT A 0 PASS DP=50;GPV=1;SPV=0.013242;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
593 chr10 38745303 . AATG A 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
594 chr10 38745316 . AATG A 0 PASS DP=47;GPV=1;SPV=0.17641;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
595 chr10 38807919 . G C 0 PASS DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
596 chr10 38807930 . ATTTGG A 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
597 chr10 38949903 . G C 0 PASS DP=63;GPV=1;SPV=0.039588;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:12,4:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
598 chr10 38966360 . C T 0 PASS DP=256;GPV=1;SPV=0.001569;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:118,26:60,7:58,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
599 chr10 39156498 . G C 0 PASS DP=63;GPV=1;SPV=0.0039777;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:20,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
600 chr10 40065992 . G T 0 PASS DP=677;GPV=1;SPV=0.0071518;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:361:312,37:167,19:145,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
601 chr10 40073709 . C A 0 PASS DP=163;GPV=1;SPV=0.03677;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:77,10:11,2:66,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
602 chr10 40371463 . T G 0 PASS DP=33;GPV=1;SPV=0.015851;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
603 chr10 40588767 . TC T 0 PASS DP=57;GPV=1;SPV=0.056683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:26,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
604 chr10 40799584 . C G 0 PASS DP=34;GPV=1;SPV=0.021615;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:7,2:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
605 chr10 40935692 . G A 0 PASS DP=58;GPV=1;SPV=0.19386;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:0,0:35,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
606 chr10 41509751 . G A 0 PASS DP=101;GPV=1;SPV=0.021605;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:50,10:27,8:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
607 chr10 41531607 . A C 0 PASS DP=256;GPV=1;SPV=0.04229;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:116,15:51,2:65,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
608 chr10 41542758 . T C 0 PASS DP=243;GPV=1;SPV=0.032351;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:114,13:22,2:92,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
609 chr10 41567788 . C T 0 PASS DP=113;GPV=1;SPV=0.008043;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:49,16:20,14:29,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
610 chr10 41579978 . A G 0 PASS DP=50;GPV=1;SPV=0.030781;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:15,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
611 chr10 41583893 . A G 0 PASS DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:13,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
612 chr10 41589469 . G C 0 PASS DP=147;GPV=1;SPV=0.013577;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:62,17:48,12:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
613 chr10 41730415 . G A 0 PASS DP=64;GPV=1;SPV=0.0046915;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:12,9:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
614 chr10 41879225 . A C 0 PASS DP=55;GPV=1;SPV=0.0035252;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:7,3:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
615 chr10 41904222 . A T 0 PASS DP=177;GPV=1;SPV=0.040458;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:86,12:59,4:27,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
616 chr10 41915238 . A G 0 PASS DP=117;GPV=1;SPV=0.019547;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:61,7:33,3:28,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
617 chr10 42071375 . A T 0 PASS DP=1234;GPV=1;SPV=0.015828;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:715:629,77:2,2:627,75
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
618 chr10 42130656 . A T 0 PASS DP=155;GPV=1;SPV=0.036978;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:68,17:37,9:31,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
619 chr10 42841410 . G GA 0 PASS DP=23;GPV=1;SPV=0.013124;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:3,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
620 chr10 43107564 . C G 0 PASS DP=50;GPV=1;SPV=0.064915;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
621 chr10 43167921 . AGT A 0 PASS DP=63;GPV=1;SPV=0.018608;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:15,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
622 chr10 43167929 . A ATAATAAT 0 PASS DP=62;GPV=1;SPV=0.11839;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:16,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
623 chr10 44720733 . GA G 0 PASS DP=40;GPV=1;SPV=0.0018191;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,4:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
624 chr10 45341228 . G A 0 PASS DP=64;GPV=1;SPV=0.004732;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:6,8:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
625 chr10 45617591 . GA G 0 PASS DP=27;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:10,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
626 chr10 45710864 . C T 0 PASS DP=66;GPV=1;SPV=0.0025336;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:12,11:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
627 chr10 45749836 . A AAAAAAAAATATATAT 0 PASS DP=28;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,4:4,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
628 chr10 45775938 . T C 0 PASS DP=33;GPV=1;SPV=0.091143;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
629 chr10 45836143 . T C 0 PASS DP=30;GPV=1;SPV=0.043423;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
630 chr10 45849479 . T G 0 PASS DP=51;GPV=1;SPV=0.060665;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:14,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
631 chr10 45890429 . T C 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
632 chr10 45960209 . A C 0 PASS DP=36;GPV=1;SPV=0.0077158;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:10,9:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
633 chr10 46337370 . A G 0 PASS DP=73;GPV=1;SPV=0.064086;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:14,2:24,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
634 chr10 47280793 . CAAAAA C 0 PASS DP=18;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
635 chr10 47296068 . C T 0 PASS DP=46;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
636 chr10 49599548 . C A 0 PASS DP=65;GPV=1;SPV=0.0012065;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:11,4:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
637 chr10 50186806 . A G 0 PASS DP=38;GPV=1;SPV=0.019737;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,1:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
638 chr10 50722818 . C CTTT 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
639 chr10 51349472 . G A 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
640 chr10 51480004 . C CA 0 PASS DP=60;GPV=1;SPV=0.0094816;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:26,19:13,8:13,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
641 chr10 51542814 . G A 0 PASS DP=66;GPV=1;SPV=0.0053553;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:18,7:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
642 chr10 52166827 . ATG A 0 PASS DP=34;GPV=1;SPV=0.12093;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
643 chr10 52244854 . T TAA 0 PASS DP=52;GPV=1;SPV=0.064826;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:17,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
644 chr10 52287706 . A T 0 PASS DP=31;GPV=1;SPV=0.12458;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:8,1:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
645 chr10 54006161 . T C 0 PASS DP=50;GPV=1;SPV=0.0070897;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,7:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
646 chr10 54389144 . GGAAAAA G 0 PASS DP=52;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:0,3:0,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
647 chr10 54558235 . C A 0 PASS DP=67;GPV=1;SPV=0.00052875;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,7:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
648 chr10 54853440 . CATAT C 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:15,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
649 chr10 56175689 . A G 0 PASS DP=25;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,3:3,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
650 chr10 57693902 . G A 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
651 chr10 58139554 . T G 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
652 chr10 58723476 . A C 0 PASS DP=70;GPV=1;SPV=0.00074243;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:17,5:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
653 chr10 60469287 . G GTATA 0 PASS DP=54;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
654 chr10 60469371 . A G 0 PASS DP=29;GPV=1;SPV=0.041809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:4,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
655 chr10 61938883 . GA G 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:5,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
656 chr10 63433586 . C T 0 PASS DP=52;GPV=1;SPV=0.26429;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,4:28,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
657 chr10 63486152 . AAAAAAAAAAAAAAAAAC A 0 PASS DP=35;GPV=1;SPV=0.024337;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
658 chr10 64746619 . T C 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
659 chr10 65077424 . T A 0 PASS DP=52;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:33:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
660 chr10 65372411 . G A 0 PASS DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,3:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
661 chr10 65391347 . G A 0 PASS DP=30;GPV=1;SPV=0.020875;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
662 chr10 66024085 . A ATTTTTT 0 PASS DP=24;GPV=1;SPV=0.32967;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
663 chr10 66845708 . A AAAAAAAAAAAC 0 PASS DP=26;GPV=1;SPV=0.0047847;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,4:3,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
664 chr10 66996649 . C CA 0 PASS DP=30;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:7,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
665 chr10 67219498 . T A 0 PASS DP=75;GPV=1;SPV=0.0017936;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:11,3:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
666 chr10 67854315 . A AAAAAAAT 0 PASS DP=20;GPV=1;SPV=0.040043;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,5:0,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
667 chr10 68203710 . C T 0 PASS DP=59;GPV=1;SPV=0.2738;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:29,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
668 chr10 68760880 . A C 0 PASS DP=54;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:1,2:0,0:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
669 chr10 69283124 . C CA 0 PASS DP=29;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,4:3,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
670 chr10 69632457 . CAAAAA C 0 PASS DP=36;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,9:4,6:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
671 chr10 70133098 . AAGAGAGAGAGAG A 0 PASS DP=33;GPV=1;SPV=0.011374;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,10:2,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
672 chr10 70369605 . CAA C 0 PASS DP=27;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,6:5,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
673 chr10 70813920 . A T 0 PASS DP=49;GPV=1;SPV=0.015549;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:12,5:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
674 chr10 73006205 . T TAA 0 PASS DP=25;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:3,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
675 chr10 74347106 . CAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,10:1,8:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
676 chr10 74695615 . GT G 0 PASS DP=42;GPV=1;SPV=0.24484;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:20,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
677 chr10 76616929 . CAT C 0 PASS DP=18;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
678 chr10 76617080 . A ATAT 0 PASS DP=28;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,3:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
679 chr10 78221462 . A ATGTGTGTG 0 PASS DP=51;GPV=1;SPV=0.014414;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:8,3:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
680 chr10 78814818 . G T 0 PASS DP=86;GPV=1;SPV=0.055991;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:29,6:13,2:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
681 chr10 79322195 . G A 0 PASS DP=66;GPV=1;SPV=0.0081036;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:14,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
682 chr10 79806583 . T TTATATATATA 0 PASS DP=35;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,8:4,6:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
683 chr10 79879029 . G A 0 PASS DP=64;GPV=1;SPV=0.00031521;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:11,9:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
684 chr10 82132479 . GAT G 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
685 chr10 82694055 . T A 0 PASS DP=73;GPV=1;SPV=0.00029546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:12,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
686 chr10 82856756 . CA C 0 PASS DP=31;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:8,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
687 chr10 83255151 . G A 0 PASS DP=40;GPV=1;SPV=0.0023885;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,17:7,12:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
688 chr10 83635957 . T C 0 PASS DP=53;GPV=1;SPV=0.0031185;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:7,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
689 chr10 83774421 . A C 0 PASS DP=69;GPV=1;SPV=0.0058487;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:14,5:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
690 chr10 84180135 . G A 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
691 chr10 85502876 . C CTT 0 PASS DP=28;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:2,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
692 chr10 85930264 . A T 0 PASS DP=51;GPV=1;SPV=0.0099148;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
693 chr10 86491136 . CT C 0 PASS DP=30;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
694 chr10 86645884 . C CT 0 PASS DP=28;GPV=1;SPV=0.036089;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
695 chr10 86924514 . A AT 0 PASS DP=58;GPV=1;SPV=0.060727;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
696 chr10 88187197 . A T 0 PASS DP=33;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,4:2,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
697 chr10 89997858 . C CTATCTATT 0 PASS DP=59;GPV=1;SPV=0.00011008;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,13:11,8:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
698 chr10 90422967 . A T 0 PASS DP=62;GPV=1;SPV=0.00016659;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,2:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
699 chr10 90614158 . C A 0 PASS DP=55;GPV=1;SPV=0.0079418;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
700 chr10 92001971 . T C 0 PASS DP=26;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,2:1,1:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
701 chr10 92331889 . G GTTTT 0 PASS DP=34;GPV=1;SPV=0.2419;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,4:8,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
702 chr10 92721325 . T A 0 PASS DP=53;GPV=1;SPV=0.011867;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:9,1:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
703 chr10 93831288 . G C 0 PASS DP=36;GPV=1;SPV=0.14141;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,4:1,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
704 chr10 95066119 . T TGA 0 PASS DP=34;GPV=1;SPV=0.0059881;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:7,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
705 chr10 95563605 . CA C 0 PASS DP=60;GPV=1;SPV=0.027592;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:6,5:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
706 chr10 96742764 . CCGTA C 0 PASS DP=72;GPV=1;SPV=0.0001697;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:19,6:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
707 chr10 97125533 . C CAA 0 PASS DP=38;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:7,7:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
708 chr10 98397877 . CT C 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
709 chr10 98961345 . G T 0 PASS DP=33;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
710 chr10 98997112 . C CTT 0 PASS DP=32;GPV=1;SPV=0.12566;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:11,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
711 chr10 99356580 . G A 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:19,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
712 chr10 99953819 . A AAAAAAAAAAAAAAAG 0 PASS DP=32;GPV=1;SPV=0.042547;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
713 chr10 100822227 . G A 0 PASS DP=50;GPV=1;SPV=0.00081542;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:8,2:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
714 chr10 101265768 . ATATTTTT A 0 PASS DP=28;GPV=1;SPV=0.26923;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:0,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
715 chr10 103129579 . T G 0 PASS DP=28;GPV=1;SPV=0.087179;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
716 chr10 103909400 . ATATATATG A 0 PASS DP=43;GPV=1;SPV=0.29139;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
717 chr10 104438348 . G GT 0 PASS DP=38;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,4:7,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
718 chr10 105561145 . CG C 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
719 chr10 106277597 . T A 0 PASS DP=69;GPV=1;SPV=0.0016612;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:9,3:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
720 chr10 107044512 . T TA 0 PASS DP=29;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:7,7:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
721 chr10 108848099 . A T 0 PASS DP=78;GPV=1;SPV=0.0030923;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:13,5:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
722 chr10 109675736 . C T 0 PASS DP=52;GPV=1;SPV=7.3489e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,22:8,10:5,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
723 chr10 110165018 . C CTAAA 0 PASS DP=64;GPV=1;SPV=0.0013413;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:13,3:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
724 chr10 110284804 . T C 0 PASS DP=69;GPV=1;SPV=0.10571;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:22,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
725 chr10 111368317 . A G 0 PASS DP=49;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,5:12,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
726 chr10 111407403 . C A 0 PASS DP=56;GPV=1;SPV=0.10049;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:16,2:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
727 chr10 111666783 . G T 0 PASS DP=63;GPV=1;SPV=1.1241e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:8,12:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
728 chr10 112265690 . T A 0 PASS DP=64;GPV=1;SPV=5.5695e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
729 chr10 112300319 . G GAA 0 PASS DP=43;GPV=1;SPV=0.22206;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:20,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
730 chr10 112546777 . G T 0 PASS DP=47;GPV=1;SPV=0.018613;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:17,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
731 chr10 114638622 . TACACACACACAC T 0 PASS DP=44;GPV=1;SPV=0.097397;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:18,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
732 chr10 115389500 . C CA 0 PASS DP=29;GPV=1;SPV=0.014079;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:7,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
733 chr10 117191994 . C A 0 PASS DP=41;GPV=1;SPV=0.03514;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
734 chr10 117945508 . T C 0 PASS DP=33;GPV=1;SPV=0.065325;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
735 chr10 118716605 . C CTT 0 PASS DP=35;GPV=1;SPV=0.031249;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:7,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
736 chr10 118798641 . A ATT 0 PASS DP=20;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
737 chr10 119101623 . CTCCA C 0 PASS DP=51;GPV=1;SPV=0.036962;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
738 chr10 119101673 . G A 0 PASS DP=58;GPV=1;SPV=0.022365;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:20,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
739 chr10 120354643 . CT C 0 PASS DP=25;GPV=1;SPV=0.0025519;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,10:3,9:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
740 chr10 121090620 . CAAA C 0 PASS DP=27;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,9:3,6:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
741 chr10 121781176 . T C 0 PASS DP=67;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
742 chr10 122634430 . TTCTCTCTCTC T 0 PASS DP=23;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:4,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
743 chr10 123072479 . A G 0 PASS DP=57;GPV=1;SPV=0.087179;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,5:9,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
744 chr10 124932281 . AT A 0 PASS DP=25;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:4,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
745 chr10 125352979 . A G 0 PASS DP=66;GPV=1;SPV=0.00019486;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:12,7:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
746 chr10 125894156 . C T 0 PASS DP=106;GPV=1;SPV=0.023456;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:16,2:30,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
747 chr10 126216045 . C G 0 PASS DP=74;GPV=1;SPV=0.0011799;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:15,4:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
748 chr10 126221389 . CAA C 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:9,7:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
749 chr10 126251605 . GATGGATGC G 0 PASS DP=49;GPV=1;SPV=0.19313;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
750 chr10 126649667 . G T 0 PASS DP=62;GPV=1;SPV=0.00086088;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:10,4:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
751 chr10 128924414 . A C 0 PASS DP=65;GPV=1;SPV=0.053114;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
752 chr10 128924425 . C CATCT 0 PASS DP=57;GPV=1;SPV=0.043835;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,4:7,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
753 chr10 130222537 . A C 0 PASS DP=71;GPV=1;SPV=0.0013769;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:16,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
754 chr10 130226463 . A G 0 PASS DP=63;GPV=1;SPV=0.0015113;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:5,5:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
755 chr10 130790561 . C T 0 PASS DP=60;GPV=1;SPV=0.13721;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:14,2:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
756 chr10 130815854 . C G 0 PASS DP=53;GPV=1;SPV=0.020691;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
757 chr10 133644072 . G GA 0 PASS DP=145;GPV=1;SPV=0.0019294;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:64,19:31,6:33,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
758 chr10 133657666 . G A 0 PASS DP=290;GPV=1;SPV=0.025772;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:124,27:52,11:72,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
759 chr10 133660260 . G A 0 PASS DP=136;GPV=1;SPV=0.039804;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:64,12:31,10:33,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
760 chr10 133770603 . G A 0 PASS DP=37;GPV=1;SPV=0.19154;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
761 chr10 133770626 . A G 0 PASS DP=38;GPV=1;SPV=0.23659;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
762 chr11 131580 . G A 0 PASS DP=58;GPV=1;SPV=0.028495;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
763 chr11 172718 . A G 0 PASS DP=48;GPV=1;SPV=0.059999;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:11,1:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
764 chr11 897146 . C CA 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
765 chr11 2018276 . T G 0 PASS DP=74;GPV=1;SPV=0.00055309;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:13,4:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
766 chr11 2233897 . A AT 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,1:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
767 chr11 2233901 . T A 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
768 chr11 2285949 . A C 0 PASS DP=61;GPV=1;SPV=3.1411e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:10,6:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
769 chr11 2749591 . C CCT 0 PASS DP=38;GPV=1;SPV=0.048755;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
770 chr11 2878233 . C CCTTT 0 PASS DP=21;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:3,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
771 chr11 3094552 . T C 0 PASS DP=72;GPV=1;SPV=0.017945;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:12,4:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
772 chr11 5202019 . A C 0 PASS DP=62;GPV=1;SPV=2.4825e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:6,4:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
773 chr11 6435147 . C T 0 PASS DP=62;GPV=1;SPV=0.00065175;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:17,5:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
774 chr11 6774952 . G A 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
775 chr11 8149017 . A G 0 PASS DP=45;GPV=1;SPV=0.021743;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
776 chr11 8330531 . C CT 0 PASS DP=26;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
777 chr11 9880116 . T C 0 PASS DP=33;GPV=1;SPV=0.010716;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:3,3:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
778 chr11 10310625 . C CAG 0 PASS DP=38;GPV=1;SPV=0.13105;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
779 chr11 10310678 . A AGAGAGAGC 0 PASS DP=30;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:11,1:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
780 chr11 10562946 . C CT 0 PASS DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
781 chr11 11086280 . G C 0 PASS DP=69;GPV=1;SPV=3.274e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:10,5:9,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
782 chr11 11923048 . A G 0 PASS DP=31;GPV=1;SPV=0.016783;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,6:1,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
783 chr11 12564523 . T A 0 PASS DP=43;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,9:3,3:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
784 chr11 15530642 . G T 0 PASS DP=58;GPV=1;SPV=0.0092761;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
785 chr11 15639211 . A AAG 0 PASS DP=49;GPV=1;SPV=0.43134;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:24,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
786 chr11 16479708 . AAACT A 0 PASS DP=58;GPV=1;SPV=0.048259;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
787 chr11 16479713 . G C 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
788 chr11 16906224 . T TAGGA 0 PASS DP=46;GPV=1;SPV=0.046139;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,6:13,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
789 chr11 18247346 . G A 0 PASS DP=65;GPV=1;SPV=0.0016408;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:6,3:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
790 chr11 18251982 . T C 0 PASS DP=20;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:1,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
791 chr11 19351976 . A AGT 0 PASS DP=47;GPV=1;SPV=0.020223;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,5:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
792 chr11 20798970 . GATAAATACGGACAAAATTAAACCTAATGATAAACGTCATGGAAGAAA G 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
793 chr11 21192060 . C A 0 PASS DP=56;GPV=1;SPV=0.00034257;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:11,6:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
794 chr11 21358565 . A ATTT 0 PASS DP=25;GPV=1;SPV=0.12308;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:2,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
795 chr11 21403606 . CAA C 0 PASS DP=45;GPV=1;SPV=0.0015106;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:9,4:4,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
796 chr11 21403609 . A C 0 PASS DP=47;GPV=1;SPV=0.0027281;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:9,4:6,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
797 chr11 22269501 . G A 0 PASS DP=35;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,4:7,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
798 chr11 22641298 . ATATC A 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
799 chr11 24079271 . AAG A 0 PASS DP=49;GPV=1;SPV=0.12152;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,6:8,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
800 chr11 24388535 . A G 0 PASS DP=35;GPV=1;SPV=0.021839;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:4,1:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
801 chr11 24388935 . A G 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
802 chr11 24455988 . C G 0 PASS DP=53;GPV=1;SPV=0.00027241;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:6,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
803 chr11 24984719 . G A 0 PASS DP=49;GPV=1;SPV=0.0024374;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:8,8:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
804 chr11 25804733 . T A 0 PASS DP=52;GPV=1;SPV=1.7307e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:2,5:12,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
805 chr11 26016983 . GAA G 0 PASS DP=33;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:10,8:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
806 chr11 27436375 . G A 0 PASS DP=35;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:16,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
807 chr11 27439901 . C T 0 PASS DP=32;GPV=1;SPV=0.0063246;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,8:5,5:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
808 chr11 27731810 . T C 0 PASS DP=68;GPV=1;SPV=0.0025244;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:11,4:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
809 chr11 28181258 . A T 0 PASS DP=56;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:16,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
810 chr11 28312566 . T C 0 PASS DP=57;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:0,2:0,0:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
811 chr11 28455216 . CTTT C 0 PASS DP=20;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
812 chr11 28799096 . T A 0 PASS DP=68;GPV=1;SPV=0.0065944;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:16,3:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
813 chr11 29145810 . A AAAAAAAAAAAAAAAGG 0 PASS DP=28;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
814 chr11 29504566 . C T 0 PASS DP=21;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,6:0,2:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
815 chr11 30945750 . G A 0 PASS DP=42;GPV=1;SPV=0.094902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:4,2:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
816 chr11 31518494 . A AT 0 PASS DP=33;GPV=1;SPV=0.029832;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
817 chr11 32498387 . G GTCTTTCTT 0 PASS DP=63;GPV=1;SPV=0.038499;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:12,3:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
818 chr11 33118747 . TA T 0 PASS DP=62;GPV=1;SPV=0.006003;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:25,24:10,12:15,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
819 chr11 33154486 . ACTTT A 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
820 chr11 34194702 . G C 0 PASS DP=53;GPV=1;SPV=0.0063293;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:8,4:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
821 chr11 34520476 . C CT 0 PASS DP=28;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:2,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
822 chr11 35002384 . CT C 0 PASS DP=29;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:2,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
823 chr11 35419998 . G C 0 PASS DP=83;GPV=1;SPV=3.7727e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:13,13:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
824 chr11 35827781 . T TAATAATAATAATAATAAA 0 PASS DP=26;GPV=1;SPV=0.20553;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,3:9,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
825 chr11 36128154 . ATTAAAC A 0 PASS DP=37;GPV=1;SPV=0.035568;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
826 chr11 37099828 . C T 0 PASS DP=26;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
827 chr11 37099830 . T C 0 PASS DP=29;GPV=1;SPV=0.10577;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:3,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
828 chr11 37190545 . AAGAGAGAG A 0 PASS DP=25;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:8,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
829 chr11 37348286 . A G 0 PASS DP=30;GPV=1;SPV=0.017591;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
830 chr11 37534487 . GTT G 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
831 chr11 39574939 . GTA G 0 PASS DP=49;GPV=1;SPV=0.034924;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
832 chr11 39612074 . CA C 0 PASS DP=41;GPV=1;SPV=0.00072552;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:8,7:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
833 chr11 40381954 . G GTT 0 PASS DP=27;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
834 chr11 41093927 . C CA 0 PASS DP=24;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
835 chr11 41938402 . G A 0 PASS DP=60;GPV=1;SPV=0.014707;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:13,4:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
836 chr11 41959443 . A ATATATATCTATCTATC 0 PASS DP=57;GPV=1;SPV=0.0025738;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:9,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
837 chr11 42383876 . TA T 0 PASS DP=59;GPV=1;SPV=0.11505;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:17,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
838 chr11 43705751 . CCT C 0 PASS DP=22;GPV=1;SPV=0.0037594;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
839 chr11 44065496 . CT C 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
840 chr11 44663344 . G C 0 PASS DP=39;GPV=1;SPV=0.083396;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:8,1:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
841 chr11 44700701 . G A 0 PASS DP=37;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:8,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
842 chr11 44943603 . C G 0 PASS DP=79;GPV=1;SPV=4.2642e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:14,13:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
843 chr11 46169560 . AAAAGAAAG A 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:12,9:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
844 chr11 46328664 . G A 0 PASS DP=45;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,4:3,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
845 chr11 47250805 . A G 0 PASS DP=64;GPV=1;SPV=2.0361e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:13,8:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
846 chr11 47488306 . A T 0 PASS DP=48;GPV=1;SPV=0.069354;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:12,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
847 chr11 47765374 . A AAAAAGAAAAGAAAAG 0 PASS DP=42;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:3,1:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
848 chr11 48571931 . C CT 0 PASS DP=48;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,4:12,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
849 chr11 49406779 . GTATATATATATATATATATATCTGTA G 0 PASS DP=43;GPV=1;SPV=0.25455;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,4:4,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
850 chr11 49803343 . CTTT C 0 PASS DP=28;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,9:1,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
851 chr11 49859015 . C CAAAA 0 PASS DP=27;GPV=1;SPV=0.0063246;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:3,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
852 chr11 49885040 . A ATTTCTTTC 0 PASS DP=51;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,4:1,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
853 chr11 51157750 . A C 0 PASS DP=91;GPV=1;SPV=0.011806;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:17,4:24,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
854 chr11 51248292 . C G 0 PASS DP=73;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:15,7:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
855 chr11 51911615 . G A 0 PASS DP=55;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:8,1:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
856 chr11 52146099 . C A 0 PASS DP=178;GPV=1;SPV=0.017156;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:90,16:75,14:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
857 chr11 52284240 . T A 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:7,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
858 chr11 52341887 . G A 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:6,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
859 chr11 52495354 . C A 0 PASS DP=68;GPV=1;SPV=0.048152;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:27,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
860 chr11 52739176 . A C 0 PASS DP=63;GPV=1;SPV=0.098889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:21,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
861 chr11 53141533 . G C 0 PASS DP=34;GPV=1;SPV=0.028921;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:2,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
862 chr11 53563809 . A T 0 PASS DP=59;GPV=1;SPV=0.060214;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:21,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
863 chr11 54269194 . T A 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
864 chr11 54371781 . T C 0 PASS DP=30;GPV=1;SPV=0.031264;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:12,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
865 chr11 54401653 . C G 0 PASS DP=36;GPV=1;SPV=0.2538;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
866 chr11 54410525 . C T 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
867 chr11 54412246 . A G 0 PASS DP=46;GPV=1;SPV=0.0057488;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:15,11:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
868 chr11 54414499 . G A 0 PASS DP=74;GPV=1;SPV=0.02311;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:17,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
869 chr11 55403395 . A T 0 PASS DP=30;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,6:1,3:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
870 chr11 55403571 . C CTTTGCTTACTTTGACA 0 PASS DP=32;GPV=1;SPV=0.032805;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:3,8:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
871 chr11 55403572 . C A 0 PASS DP=34;GPV=1;SPV=0.023692;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:3,9:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
872 chr11 55639158 . A T 0 PASS DP=64;GPV=1;SPV=0.0063358;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:10,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
873 chr11 55765156 . A T 0 PASS DP=39;GPV=1;SPV=0.019042;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:8,8:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
874 chr11 56497195 . G A 0 PASS DP=77;GPV=1;SPV=0.012401;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:24,2:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
875 chr11 56756712 . G A 0 PASS DP=42;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
876 chr11 56759810 . A C 0 PASS DP=67;GPV=1;SPV=0.025141;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:13,8:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
877 chr11 57515518 . G A 0 PASS DP=87;GPV=1;SPV=0.00035161;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:40,16:19,8:21,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
878 chr11 57558174 . G T 0 PASS DP=70;GPV=1;SPV=0.020953;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:24,8:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
879 chr11 57918856 . A C 0 PASS DP=27;GPV=1;SPV=0.011037;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:4,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
880 chr11 57996477 . T C 0 PASS DP=48;GPV=1;SPV=0.042491;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,6:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
881 chr11 58008340 . G GT 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
882 chr11 58677727 . TCATC T 0 PASS DP=39;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
883 chr11 59195438 . A T 0 PASS DP=60;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
884 chr11 60950325 . C T 0 PASS DP=81;GPV=1;SPV=0.0011003;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:17,5:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
885 chr11 61601275 . G A 0 PASS DP=81;GPV=1;SPV=0.0017165;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:16,4:22,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
886 chr11 63177856 . A G 0 PASS DP=27;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
887 chr11 63177859 . TATATA T 0 PASS DP=27;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
888 chr11 63382288 . T G 0 PASS DP=46;GPV=1;SPV=0.00078184;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,4:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
889 chr11 63500547 . G C 0 PASS DP=67;GPV=1;SPV=0.00026014;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:8,5:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
890 chr11 63860485 . G A 0 PASS DP=55;GPV=1;SPV=0.00031973;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:8,8:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
891 chr11 64582170 . CTCA C 0 PASS DP=33;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:3,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
892 chr11 65843220 . CAA C 0 PASS DP=42;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,12:5,9:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
893 chr11 68000043 . G A 0 PASS DP=66;GPV=1;SPV=0.0040978;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,3:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
894 chr11 68870443 . AAG A 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
895 chr11 69351971 . G A 0 PASS DP=65;GPV=1;SPV=0.04647;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:16,3:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
896 chr11 71135483 . T G 0 PASS DP=35;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,3:3,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
897 chr11 72079109 . C T 0 PASS DP=70;GPV=1;SPV=0.00040558;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:16,9:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
898 chr11 75318174 . T A 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
899 chr11 75821122 . C T 0 PASS DP=61;GPV=1;SPV=5.2903e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:12,5:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
900 chr11 76103537 . G GT 0 PASS DP=45;GPV=1;SPV=0.026092;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:13,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
901 chr11 76602194 . A T 0 PASS DP=65;GPV=1;SPV=0.0025828;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:16,6:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
902 chr11 77479602 . CT C 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
903 chr11 77617367 . C CAA 0 PASS DP=37;GPV=1;SPV=0.43846;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,6:7,5:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
904 chr11 77646783 . A C 0 PASS DP=43;GPV=1;SPV=0.030474;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
905 chr11 78160253 . C T 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
906 chr11 79150786 . G T 0 PASS DP=69;GPV=1;SPV=1.7558e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,3:6,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
907 chr11 79164083 . T A 0 PASS DP=27;GPV=1;SPV=0.045652;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:2,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
908 chr11 79337046 . A C 0 PASS DP=69;GPV=1;SPV=0.0061819;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:7,5:25,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
909 chr11 80400038 . T A 0 PASS DP=53;GPV=1;SPV=0.0007584;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:11,7:6,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
910 chr11 82380028 . G T 0 PASS DP=50;GPV=1;SPV=0.014488;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:5,3:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
911 chr11 84408706 . C A 0 PASS DP=57;GPV=1;SPV=0.014243;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,4:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
912 chr11 84434118 . C CA 0 PASS DP=39;GPV=1;SPV=0.019899;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,6:9,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
913 chr11 85500561 . T TAAA 0 PASS DP=42;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:3,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
914 chr11 85862285 . G C 0 PASS DP=65;GPV=1;SPV=0.00051706;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,7:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
915 chr11 86139968 . C G 0 PASS DP=64;GPV=1;SPV=0.00019835;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
916 chr11 86307577 . C A 0 PASS DP=91;GPV=1;SPV=0.041764;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:15,8:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
917 chr11 86496410 . G C 0 PASS DP=63;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,2:2,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
918 chr11 87189112 . T C 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
919 chr11 87690200 . T TA 0 PASS DP=25;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,2:0,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
920 chr11 87690207 . A AAT 0 PASS DP=26;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,3:1,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
921 chr11 88251411 . G GTA 0 PASS DP=50;GPV=1;SPV=0.027067;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,14:12,7:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
922 chr11 89778365 . A G 0 PASS DP=78;GPV=1;SPV=0.010773;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:35,19:17,4:18,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
923 chr11 90096787 . C G 0 PASS DP=31;GPV=1;SPV=0.019162;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,5:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
924 chr11 90495498 . T A 0 PASS DP=29;GPV=1;SPV=0.015535;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:2,2:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
925 chr11 90855626 . A T 0 PASS DP=37;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,2:5,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
926 chr11 91278918 . G A 0 PASS DP=63;GPV=1;SPV=1.2971e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:13,7:7,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
927 chr11 91651351 . T A 0 PASS DP=60;GPV=1;SPV=0.013929;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:17,5:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
928 chr11 91821128 . G A 0 PASS DP=57;GPV=1;SPV=0.0021435;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:8,5:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
929 chr11 96978545 . GTCTGTCTA G 0 PASS DP=56;GPV=1;SPV=0.00010656;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:4,8:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
930 chr11 97056518 . G C 0 PASS DP=71;GPV=1;SPV=0.0006295;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:16,8:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
931 chr11 98285550 . GAAA G 0 PASS DP=30;GPV=1;SPV=0.0021323;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
932 chr11 98917076 . A AAAAGG 0 PASS DP=33;GPV=1;SPV=0.025795;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:5,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
933 chr11 99433372 . T A 0 PASS DP=47;GPV=1;SPV=0.17641;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
934 chr11 99747460 . C CTT 0 PASS DP=33;GPV=1;SPV=0.30914;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
935 chr11 99966592 . C A 0 PASS DP=62;GPV=1;SPV=0.00027813;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,7:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
936 chr11 100610603 . T TAAA 0 PASS DP=46;GPV=1;SPV=0.0022326;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,14:6,8:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
937 chr11 100802424 . C CT 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
938 chr11 100891439 . CT C 0 PASS DP=34;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,9:2,5:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
939 chr11 101100605 . C CCACA 0 PASS DP=47;GPV=1;SPV=0.006848;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
940 chr11 102512185 . C T 0 PASS DP=57;GPV=1;SPV=0.12587;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:5,4:3,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
941 chr11 102919535 . C CT 0 PASS DP=20;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:1,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
942 chr11 103568084 . A G 0 PASS DP=47;GPV=1;SPV=0.027878;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
943 chr11 103875221 . C G 0 PASS DP=47;GPV=1;SPV=0.025087;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:15,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
944 chr11 105540750 . G C 0 PASS DP=69;GPV=1;SPV=0.011697;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:13,2:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
945 chr11 106418553 . G A 0 PASS DP=50;GPV=1;SPV=0.0018599;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:11,5:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
946 chr11 106698539 . A C 0 PASS DP=66;GPV=1;SPV=0.0040737;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:24,7:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
947 chr11 107816288 . C CT 0 PASS DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
948 chr11 110307048 . C G 0 PASS DP=65;GPV=1;SPV=0.046286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:12,4:24,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
949 chr11 110388783 . C T 0 PASS DP=64;GPV=1;SPV=0.0042329;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:6,4:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
950 chr11 112871174 . C G 0 PASS DP=47;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,5:2,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
951 chr11 113980141 . C A 0 PASS DP=75;GPV=1;SPV=0.0015657;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:20,7:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
952 chr11 114330231 . C T 0 PASS DP=36;GPV=1;SPV=0.0077158;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,7:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
953 chr11 114786893 . G A 0 PASS DP=74;GPV=1;SPV=0.00024383;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:14,7:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
954 chr11 114948253 . GT G 0 PASS DP=20;GPV=1;SPV=0.001548;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
955 chr11 115053884 . A AATGG 0 PASS DP=47;GPV=1;SPV=0.0014606;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:4,10:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
956 chr11 115694770 . C G 0 PASS DP=66;GPV=1;SPV=0.0017887;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:15,8:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
957 chr11 116434916 . C CTGTGTGTGTG 0 PASS DP=42;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,7:7,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
958 chr11 116673394 . T TATTTA 0 PASS DP=39;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:9,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
959 chr11 117473268 . G A 0 PASS DP=65;GPV=1;SPV=0.00032976;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:12,8:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
960 chr11 117515713 . C G 0 PASS DP=42;GPV=1;SPV=0.0027092;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:4,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
961 chr11 118246585 . C CT 0 PASS DP=30;GPV=1;SPV=0.12566;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:8,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
962 chr11 118888521 . G T 0 PASS DP=54;GPV=1;SPV=0.01745;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:12,3:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
963 chr11 118975509 . C T 0 PASS DP=54;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
964 chr11 119805179 . G A 0 PASS DP=56;GPV=1;SPV=0.0041454;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
965 chr11 119848761 . C CA 0 PASS DP=40;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:9,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
966 chr11 121865084 . A ATT 0 PASS DP=36;GPV=1;SPV=0.02043;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
967 chr11 122837751 . G A 0 PASS DP=37;GPV=1;SPV=0.3193;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,6:7,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
968 chr11 124885580 . G GTTT 0 PASS DP=46;GPV=1;SPV=0.025685;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,9:7,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
969 chr11 125346787 . C CAGGAAGGGAGGA 0 PASS DP=50;GPV=1;SPV=0.01594;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:10,7:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
970 chr11 125726507 . A G 0 PASS DP=32;GPV=1;SPV=0.0023569;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:1,9:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
971 chr11 126551652 . C CT 0 PASS DP=39;GPV=1;SPV=0.0079902;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,14:8,10:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
972 chr11 129485119 . C T 0 PASS DP=74;GPV=1;SPV=3.7374e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:13,7:11,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
973 chr11 129518147 . T TAAAA 0 PASS DP=37;GPV=1;SPV=0.0092505;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:4,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
974 chr11 130091211 . C G 0 PASS DP=52;GPV=1;SPV=0.012389;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:10,5:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
975 chr11 130091323 . A C 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:9,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
976 chr11 130501444 . G A 0 PASS DP=64;GPV=1;SPV=0.00025408;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:11,9:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
977 chr11 131337917 . G C 0 PASS DP=54;GPV=1;SPV=8.8691e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:9,4:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
978 chr11 131566736 . C A 0 PASS DP=70;GPV=1;SPV=0.0004313;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
979 chr11 131873625 . A G 0 PASS DP=32;GPV=1;SPV=0.020047;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,3:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
980 chr11 132275701 . T C 0 PASS DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:5,3:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
981 chr11 132867624 . C A 0 PASS DP=41;GPV=1;SPV=0.021382;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
982 chr11 133021718 . G C 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
983 chr11 133231910 . AAATGGACACATGATGTAAAAGGCTTAGGATCCTACAAGGAAGGGC A 0 PASS DP=44;GPV=1;SPV=0.12928;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
984 chr11 133538191 . C CT 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
985 chr11 134344730 . C G 0 PASS DP=95;GPV=1;SPV=0.038105;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:48,9:26,6:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
986 chr11 134454134 . G GT 0 PASS DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,3:21,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
987 chr12 11409 . G T 0 PASS DP=166;GPV=1;SPV=0.028618;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:75,16:26,3:49,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
988 chr12 13514 . C T 0 PASS DP=225;GPV=1;SPV=0.036054;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:99,17:49,11:50,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
989 chr12 187635 . A C 0 PASS DP=24;GPV=1;SPV=0.02028;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,7:1,2:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
990 chr12 580598 . A T 0 PASS DP=56;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,4:10,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
991 chr12 964966 . C G 0 PASS DP=59;GPV=1;SPV=0.087068;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:9,2:23,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
992 chr12 1121638 . A G 0 PASS DP=38;GPV=1;SPV=0.024893;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,1:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
993 chr12 1259506 . C CTCTT 0 PASS DP=29;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:10,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
994 chr12 1484165 . C T 0 PASS DP=44;GPV=1;SPV=0.0095299;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:9,9:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
995 chr12 1958016 . A AAT 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
996 chr12 2790464 . A T 0 PASS DP=65;GPV=1;SPV=0.0025828;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
997 chr12 2835159 . A ATGTG 0 PASS DP=47;GPV=1;SPV=0.013095;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:12,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
998 chr12 2842204 . G A 0 PASS DP=33;GPV=1;SPV=0.0012781;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:4,5:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
999 chr12 2883511 . ATTTTTTTT A 0 PASS DP=24;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:1,7:1,2:0,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1000 chr12 3023790 . C CAA 0 PASS DP=41;GPV=1;SPV=0.12406;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,10:3,9:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1001 chr12 4482205 . A T 0 PASS DP=49;GPV=1;SPV=0.21888;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1002 chr12 4835134 . A AT 0 PASS DP=40;GPV=1;SPV=0.0046097;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,13:4,11:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1003 chr12 5923185 . T C 0 PASS DP=46;GPV=1;SPV=0.022869;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,8:8,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1004 chr12 6379933 . CAA C 0 PASS DP=35;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1005 chr12 7300160 . C CA 0 PASS DP=32;GPV=1;SPV=0.0071032;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,10:4,5:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1006 chr12 8184805 . G A 0 PASS DP=65;GPV=1;SPV=0.018137;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:18,10:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1007 chr12 8310981 . G A 0 PASS DP=60;GPV=1;SPV=0.038906;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:19,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1008 chr12 8397545 . G T 0 PASS DP=85;GPV=1;SPV=0.03877;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:17,9:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1009 chr12 8983395 . C CT 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:1,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1010 chr12 9295114 . C T 0 PASS DP=63;GPV=1;SPV=0.039095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:16,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1011 chr12 9296551 . G A 0 PASS DP=81;GPV=1;SPV=0.039229;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:9,7:29,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1012 chr12 9311675 . C CGTT 0 PASS DP=77;GPV=1;SPV=0.049696;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,6:17,1:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1013 chr12 9429685 . C T 0 PASS DP=88;GPV=1;SPV=0.087152;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:56,7:31,4:25,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1014 chr12 11957489 . AAAAC A 0 PASS DP=43;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:9,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1015 chr12 13469811 . C A 0 PASS DP=52;GPV=1;SPV=0.0012661;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:5,4:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1016 chr12 13999732 . C CT 0 PASS DP=20;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:4,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1017 chr12 14321198 . A G 0 PASS DP=54;GPV=1;SPV=0.0029872;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1018 chr12 14745345 . C CA 0 PASS DP=39;GPV=1;SPV=0.0024472;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,7:7,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1019 chr12 16204381 . C T 0 PASS DP=50;GPV=1;SPV=0.0012775;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,4:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1020 chr12 16341133 . CAT C 0 PASS DP=54;GPV=1;SPV=0.1228;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1021 chr12 17063515 . TTTCTTTCTTTC T 0 PASS DP=30;GPV=1;SPV=0.0084291;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,1:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1022 chr12 17346228 . CA C 0 PASS DP=25;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,7:2,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1023 chr12 17506656 . G A 0 PASS DP=60;GPV=1;SPV=0.0017392;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:16,4:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1024 chr12 19197676 . CTG C 0 PASS DP=36;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,7:6,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1025 chr12 20112787 . G GT 0 PASS DP=50;GPV=1;SPV=0.012665;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1026 chr12 20400379 . GTTTTTTTTTTTTTTTTTT G 0 PASS DP=34;GPV=1;SPV=0.055478;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:10,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1027 chr12 21933091 . G A 0 PASS DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,7:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1028 chr12 23068157 . T C 0 PASS DP=35;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:2,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1029 chr12 23086073 . G A 0 PASS DP=25;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,3:1,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1030 chr12 23807642 . A ATT 0 PASS DP=44;GPV=1;SPV=0.021659;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:15,7:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1031 chr12 23971530 . A AATATAT 0 PASS DP=46;GPV=1;SPV=0.0065711;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,9:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1032 chr12 24811355 . C G 0 PASS DP=58;GPV=1;SPV=0.0022392;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:13,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1033 chr12 24955965 . C CTTTTTTTTT 0 PASS DP=21;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,6:1,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1034 chr12 25015163 . T C 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1035 chr12 25174553 . T C 0 PASS DP=45;GPV=1;SPV=0.047937;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,10:13,2:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1036 chr12 25487810 . G GCT 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1037 chr12 25591811 . C CAGAGAG 0 PASS DP=33;GPV=1;SPV=0.034547;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1038 chr12 26308736 . C T 0 PASS DP=34;GPV=1;SPV=0.015698;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1039 chr12 28758041 . T C 0 PASS DP=53;GPV=1;SPV=0.082705;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:16,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1040 chr12 29253263 . A T 0 PASS DP=52;GPV=1;SPV=0.15731;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,3:18,2:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1041 chr12 29960382 . GT G 0 PASS DP=44;GPV=1;SPV=0.023174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:12,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1042 chr12 31094748 . T C 0 PASS DP=62;GPV=1;SPV=0.088975;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:11,2:23,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1043 chr12 31606167 . T C 0 PASS DP=57;GPV=1;SPV=0.014699;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:12,10:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1044 chr12 32033307 . C A 0 PASS DP=45;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,4:7,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1045 chr12 32393794 . CA C 0 PASS DP=30;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:6,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1046 chr12 32407121 . ATT A 0 PASS DP=29;GPV=1;SPV=0.00091984;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:6,8:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1047 chr12 32432051 . ATTTTTTTTTTT A 0 PASS DP=23;GPV=1;SPV=0.013369;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,6:2,1:0,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1048 chr12 33886040 . T TATA 0 PASS DP=35;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1049 chr12 33996063 . T C 0 PASS DP=101;GPV=1;SPV=0.038868;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:26,5:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1050 chr12 33996090 . T C 0 PASS DP=102;GPV=1;SPV=0.0015714;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:37,16:23,9:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1051 chr12 34343706 . G A 0 PASS DP=72;GPV=1;SPV=0.00055843;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:17,9:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1052 chr12 34896723 . G T 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:2,0:31,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1053 chr12 34907276 . A AC 0 PASS DP=49;GPV=1;SPV=0.054264;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,4:0,3:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1054 chr12 34946259 . C A 0 PASS DP=77;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:14,1:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1055 chr12 34993583 . T C 0 PASS DP=56;GPV=1;SPV=0.085668;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:0,0:27,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1056 chr12 35105084 . G C 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,1:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1057 chr12 35171982 . C A 0 PASS DP=76;GPV=1;SPV=0.047637;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:19,9:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1058 chr12 35235849 . C G 0 PASS DP=53;GPV=1;SPV=0.0432;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:2,0:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1059 chr12 35286257 . G T 0 PASS DP=158;GPV=1;SPV=0.027638;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:69,13:53,11:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1060 chr12 35560028 . G T 0 PASS DP=50;GPV=1;SPV=0.13663;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:8,2:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1061 chr12 35577468 . G A 0 PASS DP=80;GPV=1;SPV=0.052006;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:35,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1062 chr12 35655158 . C G 0 PASS DP=68;GPV=1;SPV=0.029808;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:4,2:29,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1063 chr12 35682353 . T A 0 PASS DP=94;GPV=1;SPV=0.0031482;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:22,5:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1064 chr12 35759260 . C A 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:21,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1065 chr12 35801570 . C G 0 PASS DP=109;GPV=1;SPV=0.043079;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:6,2:39,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1066 chr12 35964280 . C T 0 PASS DP=168;GPV=1;SPV=0.02841;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:73,17:62,13:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1067 chr12 36080780 . G A 0 PASS DP=65;GPV=1;SPV=0.0015009;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:6,1:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1068 chr12 36151977 . G T 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1069 chr12 36469140 . G T 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:1,0:32,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1070 chr12 36469188 . T A 0 PASS DP=52;GPV=1;SPV=0.1713;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:0,0:30,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1071 chr12 36518398 . G A 0 PASS DP=39;GPV=1;SPV=0.011574;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:2,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1072 chr12 36674609 . A T 0 PASS DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:13,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1073 chr12 36674944 . C A 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,0:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1074 chr12 36959746 . G T 0 PASS DP=49;GPV=1;SPV=0.052652;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:7,1:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1075 chr12 37014517 . A T 0 PASS DP=167;GPV=1;SPV=0.049161;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:92,12:66,4:26,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1076 chr12 37239948 . GA G 0 PASS DP=61;GPV=1;SPV=0.01632;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:17,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1077 chr12 37455881 . C G 0 PASS DP=88;GPV=1;SPV=0.044228;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:15,7:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1078 chr12 37656089 . C G 0 PASS DP=60;GPV=1;SPV=0.036872;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:15,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1079 chr12 37784945 . AC A 0 PASS DP=29;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1080 chr12 38058859 . CTTTCTT C 0 PASS DP=34;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:2,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1081 chr12 38453032 . A G 0 PASS DP=63;GPV=1;SPV=0.00032936;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:12,10:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1082 chr12 38538884 . GTGA G 0 PASS DP=44;GPV=1;SPV=0.027067;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,8:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1083 chr12 38538890 . C CATATAAAGAAGTTAAGAAG 0 PASS DP=44;GPV=1;SPV=0.0080824;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,11:9,8:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1084 chr12 38636228 . A AT 0 PASS DP=48;GPV=1;SPV=0.0063848;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,16:11,11:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1085 chr12 38973727 . T A 0 PASS DP=57;GPV=1;SPV=0.0078484;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:8,3:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1086 chr12 39398849 . T C 0 PASS DP=62;GPV=1;SPV=1.4853e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:12,7:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1087 chr12 40707247 . T C 0 PASS DP=46;GPV=1;SPV=0.037638;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:4,2:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1088 chr12 40999697 . CT C 0 PASS DP=33;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1089 chr12 42499725 . A AATTT 0 PASS DP=39;GPV=1;SPV=0.011728;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:8,4:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1090 chr12 42635112 . CAAAAAAAAAA C 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1091 chr12 42966839 . C T 0 PASS DP=56;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,7:7,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1092 chr12 43419885 . A C 0 PASS DP=66;GPV=1;SPV=0.00043872;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,3:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1093 chr12 44311831 . G GTA 0 PASS DP=54;GPV=1;SPV=0.0072523;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:8,6:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1094 chr12 44488909 . C CT 0 PASS DP=28;GPV=1;SPV=0.0033344;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:6,7:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1095 chr12 45899695 . TTA T 0 PASS DP=29;GPV=1;SPV=0.018691;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1096 chr12 46089197 . C CTTCTTTCT 0 PASS DP=31;GPV=1;SPV=0.012102;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1097 chr12 47261948 . TG T 0 PASS DP=68;GPV=1;SPV=0.055233;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:21,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1098 chr12 48172711 . T C 0 PASS DP=29;GPV=1;SPV=0.17135;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1099 chr12 50643045 . A T 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:9,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1100 chr12 50643405 . CTGTG C 0 PASS DP=35;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,11:4,9:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1101 chr12 50872835 . AT A 0 PASS DP=45;GPV=1;SPV=0.068288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:10,2:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1102 chr12 51248436 . T A 0 PASS DP=40;GPV=1;SPV=0.11905;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:2,4:0,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1103 chr12 51522310 . T G 0 PASS DP=68;GPV=1;SPV=0.033568;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:11,6:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1104 chr12 52002135 . C CA 0 PASS DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1105 chr12 55266757 . A AT 0 PASS DP=55;GPV=1;SPV=0.041136;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:16,6:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1106 chr12 55930357 . G GT 0 PASS DP=24;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1107 chr12 56640232 . T A 0 PASS DP=49;GPV=1;SPV=0.0098129;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1108 chr12 56776304 . C CT 0 PASS DP=30;GPV=1;SPV=0.0019317;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,12:5,7:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1109 chr12 57711038 . CAA C 0 PASS DP=30;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,8:1,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1110 chr12 57795072 . C CATAT 0 PASS DP=41;GPV=1;SPV=0.022117;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:8,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1111 chr12 61106700 . C G 0 PASS DP=86;GPV=1;SPV=0.0022245;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:22,3:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1112 chr12 62938722 . C CA 0 PASS DP=30;GPV=1;SPV=0.0084281;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1113 chr12 63438244 . C T 0 PASS DP=44;GPV=1;SPV=0.0090318;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:13,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1114 chr12 63464165 . A G 0 PASS DP=45;GPV=1;SPV=0.012394;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1115 chr12 63949081 . T A 0 PASS DP=53;GPV=1;SPV=0.0045492;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,6:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1116 chr12 64356180 . A C 0 PASS DP=51;GPV=1;SPV=0.10901;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:17,4:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1117 chr12 64540990 . AT A 0 PASS DP=34;GPV=1;SPV=0.0059157;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:0,1:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1118 chr12 64955122 . G C 0 PASS DP=62;GPV=1;SPV=4.5066e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:8,4:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1119 chr12 64983618 . C T 0 PASS DP=23;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:1,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1120 chr12 66227761 . CA C 0 PASS DP=32;GPV=1;SPV=0.034547;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:12,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1121 chr12 68111401 . CA C 0 PASS DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:13,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1122 chr12 68331423 . C G 0 PASS DP=66;GPV=1;SPV=3.4893e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,6:12,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1123 chr12 68616438 . ATT A 0 PASS DP=38;GPV=1;SPV=0.063892;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,7:12,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1124 chr12 69595688 . C CA 0 PASS DP=41;GPV=1;SPV=0.013514;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1125 chr12 69817653 . T TACACAC 0 PASS DP=37;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,10:5,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1126 chr12 71193861 . TA T 0 PASS DP=69;GPV=1;SPV=3.8197e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,10:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1127 chr12 71877499 . C T 0 PASS DP=30;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,3:3,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1128 chr12 72716379 . C A 0 PASS DP=59;GPV=1;SPV=0.00031881;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,7:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1129 chr12 73715082 . A AAAAAAAATATAT 0 PASS DP=30;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:2,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1130 chr12 73883284 . T C 0 PASS DP=63;GPV=1;SPV=0.0016051;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:9,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1131 chr12 74714924 . C CT 0 PASS DP=32;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:3,3:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1132 chr12 75507756 . C T 0 PASS DP=67;GPV=1;SPV=0.0001004;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:6,4:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1133 chr12 75905157 . A ATT 0 PASS DP=31;GPV=1;SPV=0.10134;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:13,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1134 chr12 75993190 . A C 0 PASS DP=54;GPV=1;SPV=0.15872;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1135 chr12 75999073 . C CT 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1136 chr12 76499350 . C CT 0 PASS DP=46;GPV=1;SPV=0.030957;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:5,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1137 chr12 76953803 . C A 0 PASS DP=46;GPV=1;SPV=0.023923;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:2,16:2,13:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1138 chr12 79392798 . C CT 0 PASS DP=20;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1139 chr12 79410506 . CA C 0 PASS DP=21;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:1,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1140 chr12 80462715 . C T 0 PASS DP=56;GPV=1;SPV=0.031485;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,1:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1141 chr12 80514402 . A ACACACACACTCTCT 0 PASS DP=38;GPV=1;SPV=0.037397;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:6,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1142 chr12 82538752 . A T 0 PASS DP=46;GPV=1;SPV=0.091614;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1143 chr12 83337241 . A G 0 PASS DP=37;GPV=1;SPV=0.22807;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,4:5,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1144 chr12 83506267 . A AT 0 PASS DP=39;GPV=1;SPV=0.0038562;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1145 chr12 83518298 . C T 0 PASS DP=63;GPV=1;SPV=0.0011889;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1146 chr12 83749058 . A AACACACACACAC 0 PASS DP=37;GPV=1;SPV=0.038306;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:10,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1147 chr12 83964438 . A C 0 PASS DP=62;GPV=1;SPV=0.0048152;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1148 chr12 84185099 . A T 0 PASS DP=56;GPV=1;SPV=0.0074047;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,2:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1149 chr12 84301493 . G A 0 PASS DP=56;GPV=1;SPV=4.0736e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:6,9:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1150 chr12 84393961 . C A 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:1,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1151 chr12 84615985 . TAC T 0 PASS DP=30;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:5,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1152 chr12 86441639 . T A 0 PASS DP=56;GPV=1;SPV=0.0051557;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:18,4:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1153 chr12 87007903 . A T 0 PASS DP=56;GPV=1;SPV=0.028995;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:13,4:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1154 chr12 87774931 . T A 0 PASS DP=56;GPV=1;SPV=0.0028652;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:11,5:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1155 chr12 88365088 . G T 0 PASS DP=42;GPV=1;SPV=0.020419;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1156 chr12 88992260 . ATAT A 0 PASS DP=53;GPV=1;SPV=0.043711;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1157 chr12 89324028 . T A 0 PASS DP=55;GPV=1;SPV=0.093231;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,7:9,2:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1158 chr12 91106690 . T TAAA 0 PASS DP=22;GPV=1;SPV=0.0023454;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1159 chr12 91851986 . T TGATAG 0 PASS DP=39;GPV=1;SPV=0.036036;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:4,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1160 chr12 93017161 . CTT C 0 PASS DP=22;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1161 chr12 93729785 . C CA 0 PASS DP=46;GPV=1;SPV=0.022983;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,14:11,9:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1162 chr12 94759340 . ATT A 0 PASS DP=28;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:2,2:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1163 chr12 95813784 . G A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1164 chr12 96199480 . C CTG 0 PASS DP=48;GPV=1;SPV=0.0025584;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,10:8,7:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1165 chr12 98327081 . A AGTGTGTGT 0 PASS DP=31;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,7:4,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1166 chr12 98475036 . GACACACACACACACACACAC G 0 PASS DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:3,3:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1167 chr12 98555416 . C CTTTTTTTTTTT 0 PASS DP=18;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1168 chr12 99730324 . T C 0 PASS DP=68;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:20,4:8,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1169 chr12 99897852 . TA T 0 PASS DP=51;GPV=1;SPV=0.05062;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1170 chr12 101451303 . G GTTTTT 0 PASS DP=24;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,6:1,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1171 chr12 101591855 . T C 0 PASS DP=48;GPV=1;SPV=0.11761;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:6,1:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1172 chr12 102996453 . A T 0 PASS DP=48;GPV=1;SPV=0.0082367;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,5:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1173 chr12 103385770 . A G 0 PASS DP=51;GPV=1;SPV=0.001027;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1174 chr12 103460284 . G A 0 PASS DP=49;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1175 chr12 103716625 . A C 0 PASS DP=68;GPV=1;SPV=0.00076721;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:12,5:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1176 chr12 105186673 . TG T 0 PASS DP=49;GPV=1;SPV=0.18481;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:10,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1177 chr12 105186676 . T TCG 0 PASS DP=50;GPV=1;SPV=0.20137;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:11,1:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1178 chr12 105876519 . TAAAA T 0 PASS DP=26;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:5,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1179 chr12 105991252 . CTT C 0 PASS DP=24;GPV=1;SPV=0.0079365;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:0,5:0,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1180 chr12 106103144 . G A 0 PASS DP=61;GPV=1;SPV=8.1008e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,6:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1181 chr12 106125324 . G C 0 PASS DP=63;GPV=1;SPV=0.004688;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:14,7:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1182 chr12 106770243 . C CTTTTTTTTTTTTTTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,5:11,1:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1183 chr12 107452202 . A AT 0 PASS DP=45;GPV=1;SPV=0.049827;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:10,7:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1184 chr12 107524073 . G A 0 PASS DP=56;GPV=1;SPV=0.0074047;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,1:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1185 chr12 108954113 . CA C 0 PASS DP=29;GPV=1;SPV=0.026877;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1186 chr12 109123180 . C CA 0 PASS DP=51;GPV=1;SPV=0.018165;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:6,6:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1187 chr12 109140280 . T A 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1188 chr12 109979272 . CT C 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1189 chr12 111143813 . T A 0 PASS DP=77;GPV=1;SPV=9.7753e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:14,4:16,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1190 chr12 112797944 . C T 0 PASS DP=67;GPV=1;SPV=0.0011747;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:15,10:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1191 chr12 112915265 . G C 0 PASS DP=54;GPV=1;SPV=0.01745;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:11,6:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1192 chr12 113354067 . C CT 0 PASS DP=21;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1193 chr12 113496258 . G T 0 PASS DP=50;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,5:11,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1194 chr12 113496259 . A ATCTATC 0 PASS DP=51;GPV=1;SPV=0.13093;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,5:11,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1195 chr12 114384744 . CA C 0 PASS DP=59;GPV=1;SPV=0.040224;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1196 chr12 114556511 . C T 0 PASS DP=65;GPV=1;SPV=0.0027454;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:20,6:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1197 chr12 114803944 . G T 0 PASS DP=61;GPV=1;SPV=0.0077151;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:14,4:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1198 chr12 115416653 . A G 0 PASS DP=47;GPV=1;SPV=0.083817;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1199 chr12 115441810 . CTCTCTCTCTCTATATATA C 0 PASS DP=35;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,7:4,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1200 chr12 116697288 . CAAAA C 0 PASS DP=41;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,7:5,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1201 chr12 117133313 . C T 0 PASS DP=39;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:11,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1202 chr12 117265151 . A T 0 PASS DP=78;GPV=1;SPV=4.3702e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:15,7:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1203 chr12 117678102 . AT A 0 PASS DP=55;GPV=1;SPV=0.017137;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,8:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1204 chr12 118823821 . A G 0 PASS DP=48;GPV=1;SPV=0.12587;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:5,5:4,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1205 chr12 119189302 . GGTGT G 0 PASS DP=48;GPV=1;SPV=0.0065417;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:9,17:5,11:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1206 chr12 120174789 . C CA 0 PASS DP=26;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:9,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1207 chr12 120876808 . T TAC 0 PASS DP=36;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1208 chr12 120899888 . C CAA 0 PASS DP=39;GPV=1;SPV=0.045571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,7:12,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1209 chr12 120926962 . ATATATATTATATAATATGTAT A 0 PASS DP=17;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1210 chr12 121219615 . GGATA G 0 PASS DP=52;GPV=1;SPV=0.0052134;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,11:6,6:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1211 chr12 121219623 . A G 0 PASS DP=52;GPV=1;SPV=0.030805;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,16:6,7:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1212 chr12 121494999 . C CTT 0 PASS DP=37;GPV=1;SPV=0.028934;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:11,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1213 chr12 121582304 . CT C 0 PASS DP=19;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1214 chr12 121604441 . CA C 0 PASS DP=37;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:11,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1215 chr12 122267207 . C CT 0 PASS DP=18;GPV=1;SPV=0.062937;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:1,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1216 chr12 123246709 . ATTTTTTTTTTTTTT A 0 PASS DP=22;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1217 chr12 123414932 . C CAAAA 0 PASS DP=43;GPV=1;SPV=0.014654;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,10:9,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1218 chr12 124022613 . G T 0 PASS DP=25;GPV=1;SPV=0.046953;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1219 chr12 124230450 . G T 0 PASS DP=59;GPV=1;SPV=0.0040457;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:13,8:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1220 chr12 124258456 . C CAA 0 PASS DP=34;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,8:3,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1221 chr12 124260258 . C CACCAGGGGCTGGGGCGAAG 0 PASS DP=45;GPV=1;SPV=0.049781;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:9,6:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1222 chr12 124367275 . GGCACACACAGAGGCCCA G 0 PASS DP=58;GPV=1;SPV=0.020935;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:10,8:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1223 chr12 124922325 . T C 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1224 chr12 125368947 . G T 0 PASS DP=39;GPV=1;SPV=0.0083551;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1225 chr12 126008544 . AT A 0 PASS DP=35;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1226 chr12 126224220 . A AATTT 0 PASS DP=48;GPV=1;SPV=0.0264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:6,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1227 chr12 126612633 . T C 0 PASS DP=41;GPV=1;SPV=0.017866;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,3:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1228 chr12 127341339 . T A 0 PASS DP=49;GPV=1;SPV=0.0066425;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:5,4:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1229 chr12 128113723 . A G 0 PASS DP=49;GPV=1;SPV=0.0063642;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:8,7:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1230 chr12 128242360 . T TCA 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:22,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1231 chr12 128775465 . TG T 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1232 chr12 128874124 . C CTTTCTT 0 PASS DP=22;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:0,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1233 chr12 129030702 . CA C 0 PASS DP=56;GPV=1;SPV=0.018421;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:20,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1234 chr12 129140839 . C CAA 0 PASS DP=41;GPV=1;SPV=0.029963;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:10,9:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1235 chr12 129506555 . A G 0 PASS DP=46;GPV=1;SPV=0.01088;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,7:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1236 chr12 129623698 . T C 0 PASS DP=51;GPV=1;SPV=0.0089009;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:6,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1237 chr12 129654467 . T C 0 PASS DP=71;GPV=1;SPV=0.00037701;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:18,8:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1238 chr12 129942879 . T G 0 PASS DP=69;GPV=1;SPV=2.4555e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:17,5:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1239 chr12 129958612 . T C 0 PASS DP=72;GPV=1;SPV=0.0015169;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,4:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1240 chr12 130905153 . C T 0 PASS DP=32;GPV=1;SPV=0.24625;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1241 chr12 131255918 . T G 0 PASS DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:2,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1242 chr12 131414147 . T C 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1243 chr12 131451477 . C CT 0 PASS DP=30;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:3,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1244 chr12 131574660 . C T 0 PASS DP=40;GPV=1;SPV=0.058443;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1245 chr12 131925532 . CT C 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1246 chr12 132460047 . CT C 0 PASS DP=53;GPV=1;SPV=0.00019001;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:3,16:1,10:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1247 chr12 132618228 . A AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 0 PASS DP=37;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,4:6,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1248 chr12 132965125 . C T 0 PASS DP=43;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,5:8,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1249 chr12 132981089 . T A 0 PASS DP=51;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,4:5,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1250 chr12 133223445 . C CT 0 PASS DP=36;GPV=1;SPV=0.062192;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:15,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1251 chr13 18176119 . ATTGT A 0 PASS DP=349;GPV=1;SPV=0.049953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:129,19:57,11:72,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1252 chr13 18196357 . G A 0 PASS DP=101;GPV=1;SPV=0.013484;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:49,7:25,3:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1253 chr13 18242421 . C T 0 PASS DP=64;GPV=1;SPV=0.00038112;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:11,6:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1254 chr13 18349087 . TTC T 0 PASS DP=38;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:14,1:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1255 chr13 18460379 . T A 0 PASS DP=32;GPV=1;SPV=0.14853;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1256 chr13 20290669 . T G 0 PASS DP=63;GPV=1;SPV=0.0015113;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:10,3:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1257 chr13 20937932 . C CT 0 PASS DP=29;GPV=1;SPV=0.0033344;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:3,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1258 chr13 21702976 . T C 0 PASS DP=58;GPV=1;SPV=0.10931;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:10,1:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1259 chr13 22184374 . C CTT 0 PASS DP=31;GPV=1;SPV=0.10288;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:6,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1260 chr13 22770497 . C CA 0 PASS DP=44;GPV=1;SPV=0.013164;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:13,22:10,15:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1261 chr13 23055101 . CTTTT C 0 PASS DP=28;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1262 chr13 23930675 . C T 0 PASS DP=34;GPV=1;SPV=0.083916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,5:2,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1263 chr13 24664442 . C CA 0 PASS DP=39;GPV=1;SPV=0.037397;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,16:10,12:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1264 chr13 24871958 . C CT 0 PASS DP=24;GPV=1;SPV=0.0088578;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,6:1,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1265 chr13 25101116 . A ATGTGTGTG 0 PASS DP=26;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:4,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1266 chr13 25159298 . G T 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1267 chr13 25310206 . ATT A 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,4:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1268 chr13 25510222 . G C 0 PASS DP=50;GPV=1;SPV=0.0061587;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,7:2,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1269 chr13 25560700 . CA C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1270 chr13 26472514 . ATATAT A 0 PASS DP=45;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1271 chr13 26683494 . A G 0 PASS DP=48;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1272 chr13 27051795 . G GATAT 0 PASS DP=22;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:2,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1273 chr13 28326520 . CT C 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1274 chr13 28358395 . A G 0 PASS DP=68;GPV=1;SPV=0.00056171;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:14,4:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1275 chr13 28737317 . TTCTTTCTTTC T 0 PASS DP=27;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:1,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1276 chr13 28772119 . GAGCAGTGGTTTGTAGTTCTCCTTGA G 0 PASS DP=74;GPV=1;SPV=0.0015605;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,5:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1277 chr13 29081781 . TTTTG T 0 PASS DP=42;GPV=1;SPV=0.090553;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1278 chr13 29195540 . A G 0 PASS DP=33;GPV=1;SPV=0.018182;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:0,8:0,6:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1279 chr13 29978615 . AAT A 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1280 chr13 30101349 . CA C 0 PASS DP=29;GPV=1;SPV=0.00086221;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:4,16:2,12:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1281 chr13 30474759 . C CT 0 PASS DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1282 chr13 30674886 . AT A 0 PASS DP=26;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:6,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1283 chr13 31657376 . CAA C 0 PASS DP=36;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:3,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1284 chr13 31730519 . TTGTGTGTG T 0 PASS DP=30;GPV=1;SPV=0.0077803;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,9:4,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1285 chr13 31860415 . A G 0 PASS DP=37;GPV=1;SPV=0.0014516;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1286 chr13 32096802 . C CA 0 PASS DP=25;GPV=1;SPV=0.030702;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:3,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1287 chr13 32571160 . CT C 0 PASS DP=41;GPV=1;SPV=0.00052721;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:7,6:3,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1288 chr13 32631118 . C T 0 PASS DP=42;GPV=1;SPV=0.0075758;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:30:1,5:1,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1289 chr13 33499606 . T C 0 PASS DP=29;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1290 chr13 34586081 . GAAAGAA G 0 PASS DP=23;GPV=1;SPV=0.029515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:7,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1291 chr13 34624031 . CT C 0 PASS DP=26;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:11,4:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1292 chr13 34752795 . C T 0 PASS DP=48;GPV=1;SPV=1.7354e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,19:5,12:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1293 chr13 34760342 . C A 0 PASS DP=57;GPV=1;SPV=2.9244e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:8,9:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1294 chr13 35298213 . A G 0 PASS DP=39;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:1,4:1,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1295 chr13 36376549 . C CT 0 PASS DP=55;GPV=1;SPV=0.027569;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:2,3:0,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1296 chr13 37309075 . CT C 0 PASS DP=20;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:3,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1297 chr13 37320734 . A T 0 PASS DP=59;GPV=1;SPV=0.040224;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:15,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1298 chr13 37830561 . A T 0 PASS DP=49;GPV=1;SPV=0.030612;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:14,5:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1299 chr13 39542096 . T TATAATAATA 0 PASS DP=43;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,8:2,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1300 chr13 39581532 . C CA 0 PASS DP=30;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,9:5,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1301 chr13 40176928 . AAG A 0 PASS DP=46;GPV=1;SPV=0.03876;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1302 chr13 40368888 . A C 0 PASS DP=45;GPV=1;SPV=0.083011;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,5:5,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1303 chr13 40867524 . T C 0 PASS DP=28;GPV=1;SPV=0.023188;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1304 chr13 40867542 . AT A 0 PASS DP=29;GPV=1;SPV=0.0046977;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1305 chr13 41596788 . T TACAC 0 PASS DP=38;GPV=1;SPV=0.01391;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1306 chr13 41758415 . T TGGA 0 PASS DP=25;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,5:2,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1307 chr13 41758421 . T TGGA 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,1:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1308 chr13 41863360 . TTA T 0 PASS DP=32;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:2,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1309 chr13 42109651 . C T 0 PASS DP=58;GPV=1;SPV=0.0023411;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,4:1,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1310 chr13 42420881 . A G 0 PASS DP=62;GPV=1;SPV=0.00011169;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:11,3:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1311 chr13 42735776 . CGTGT C 0 PASS DP=41;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,13:6,8:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1312 chr13 43003290 . T C 0 PASS DP=66;GPV=1;SPV=0.00043872;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:14,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1313 chr13 43940611 . C T 0 PASS DP=56;GPV=1;SPV=0.0084069;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:11,13:1,7:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1314 chr13 44595734 . C T 0 PASS DP=85;GPV=1;SPV=0.00020063;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:10,9:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1315 chr13 44914001 . T C 0 PASS DP=22;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1316 chr13 45191215 . C CAAAA 0 PASS DP=37;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,6:6,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1317 chr13 45367313 . TAAA T 0 PASS DP=52;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1318 chr13 45438626 . A AC 0 PASS DP=19;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,4:1,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1319 chr13 45958653 . T C 0 PASS DP=37;GPV=1;SPV=0.03735;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1320 chr13 47126806 . TAC T 0 PASS DP=31;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,14:5,10:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1321 chr13 47223657 . C G 0 PASS DP=24;GPV=1;SPV=0.031056;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1322 chr13 47638039 . T TA 0 PASS DP=35;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:5,8:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1323 chr13 48316719 . TCACACACA T 0 PASS DP=30;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:9,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1324 chr13 50100936 . CA C 0 PASS DP=22;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:1,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1325 chr13 50298168 . T TTTG 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1326 chr13 50939361 . G A 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1327 chr13 51173109 . A G 0 PASS DP=63;GPV=1;SPV=0.019857;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:20,6:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1328 chr13 51173229 . G A 0 PASS DP=84;GPV=1;SPV=0.04213;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,14:19,9:23,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1329 chr13 52260651 . C CAA 0 PASS DP=31;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:4,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1330 chr13 52269146 . T A 0 PASS DP=50;GPV=1;SPV=0.00024273;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:5,6:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1331 chr13 52273946 . C T 0 PASS DP=29;GPV=1;SPV=0.012694;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1332 chr13 52294613 . A C 0 PASS DP=35;GPV=1;SPV=0.01473;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1333 chr13 53138999 . C G 0 PASS DP=70;GPV=1;SPV=0.00019282;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:13,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1334 chr13 53306335 . C CAA 0 PASS DP=34;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,9:4,4:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1335 chr13 53506715 . TTATA T 0 PASS DP=36;GPV=1;SPV=0.00090577;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,15:4,10:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1336 chr13 54937574 . G T 0 PASS DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1337 chr13 55469091 . CA C 0 PASS DP=28;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:5,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1338 chr13 55470460 . G A 0 PASS DP=52;GPV=1;SPV=0.0088503;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1339 chr13 55789913 . T TTC 0 PASS DP=47;GPV=1;SPV=0.056428;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,6:3,4:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1340 chr13 56330838 . T TCACACA 0 PASS DP=36;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:9,7:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1341 chr13 56885075 . TTA T 0 PASS DP=27;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,9:3,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1342 chr13 56972897 . A G 0 PASS DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:19,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1343 chr13 57819712 . G A 0 PASS DP=67;GPV=1;SPV=0.0016513;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,2:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1344 chr13 58487075 . C CA 0 PASS DP=34;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:4,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1345 chr13 58874014 . T TACACACACACACACACAC 0 PASS DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,7:2,2:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1346 chr13 60136954 . T A 0 PASS DP=47;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,4:4,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1347 chr13 60274479 . C CG 0 PASS DP=34;GPV=1;SPV=0.00068595;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:5,19:1,11:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1348 chr13 60654876 . TATCTTC T 0 PASS DP=36;GPV=1;SPV=0.0012868;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,5:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1349 chr13 61352315 . T C 0 PASS DP=36;GPV=1;SPV=0.0031242;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,11:5,2:3,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1350 chr13 62171594 . CA C 0 PASS DP=28;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1351 chr13 63379882 . G A 0 PASS DP=68;GPV=1;SPV=0.0019465;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:11,7:21,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1352 chr13 63470281 . C CTT 0 PASS DP=38;GPV=1;SPV=0.041455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1353 chr13 63624958 . CT C 0 PASS DP=24;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1354 chr13 63802967 . CT C 0 PASS DP=27;GPV=1;SPV=0.0087567;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:5,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1355 chr13 63822620 . T C 0 PASS DP=24;GPV=1;SPV=0.0065876;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1356 chr13 63932648 . C T 0 PASS DP=65;GPV=1;SPV=0.0071887;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:15,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1357 chr13 63932654 . CACAT C 0 PASS DP=68;GPV=1;SPV=0.050247;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:16,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1358 chr13 64375072 . C CA 0 PASS DP=28;GPV=1;SPV=0.0028686;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,11:5,9:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1359 chr13 64408293 . C CAAAA 0 PASS DP=33;GPV=1;SPV=0.092234;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:5,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1360 chr13 64571486 . T G 0 PASS DP=25;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:3,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1361 chr13 64789649 . C CT 0 PASS DP=33;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:11,7:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1362 chr13 64960992 . TCCC T 0 PASS DP=36;GPV=1;SPV=0.01205;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:3,1:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1363 chr13 65857034 . A T 0 PASS DP=66;GPV=1;SPV=0.00021022;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:11,5:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1364 chr13 66196318 . G A 0 PASS DP=39;GPV=1;SPV=0.092279;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:9,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1365 chr13 66196322 . GTA G 0 PASS DP=37;GPV=1;SPV=0.077195;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1366 chr13 66408050 . C CTT 0 PASS DP=38;GPV=1;SPV=0.0010668;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,11:4,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1367 chr13 67380412 . C CAAAAA 0 PASS DP=20;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1368 chr13 67650889 . GTATATATATATATA G 0 PASS DP=30;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,8:3,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1369 chr13 69719209 . TGAGAGA T 0 PASS DP=55;GPV=1;SPV=0.026515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:2,5:2,1:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1370 chr13 70336794 . GAGAGTTGCA G 0 PASS DP=67;GPV=1;SPV=0.013477;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:17,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1371 chr13 70366060 . G GTGTGTGTGTGTGTA 0 PASS DP=42;GPV=1;SPV=0.001026;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:4,12:1,9:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1372 chr13 71412339 . C CT 0 PASS DP=33;GPV=1;SPV=4.7337e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,14:3,10:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1373 chr13 71748962 . TTC T 0 PASS DP=41;GPV=1;SPV=0.00022277;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,15:5,3:4,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1374 chr13 72603496 . AAGAAAGAAAAAG A 0 PASS DP=50;GPV=1;SPV=0.020232;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:15,6:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1375 chr13 73040203 . C CT 0 PASS DP=21;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:4,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1376 chr13 73094185 . CAA C 0 PASS DP=34;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,9:12,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1377 chr13 74166087 . C CT 0 PASS DP=42;GPV=1;SPV=0.0053554;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,15:3,11:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1378 chr13 74287349 . T TGAGAGAGAGAGAGAGA 0 PASS DP=35;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:6,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1379 chr13 74545816 . C CA 0 PASS DP=45;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,9:10,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1380 chr13 74547840 . ATAT A 0 PASS DP=27;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,3:4,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1381 chr13 75544926 . C CAAAAAA 0 PASS DP=45;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,8:5,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1382 chr13 75915955 . C CT 0 PASS DP=30;GPV=1;SPV=0.018691;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,15:5,10:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1383 chr13 76715899 . A T 0 PASS DP=45;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1384 chr13 77360844 . C CTT 0 PASS DP=42;GPV=1;SPV=0.0007326;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:0,11:0,8:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1385 chr13 78558913 . C CT 0 PASS DP=49;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,7:8,1:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1386 chr13 79706055 . T G 0 PASS DP=62;GPV=1;SPV=0.060184;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,8:9,5:27,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1387 chr13 80095207 . C T 0 PASS DP=39;GPV=1;SPV=0.045809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:1,2:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1388 chr13 80728695 . A T 0 PASS DP=58;GPV=1;SPV=0.021073;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:10,5:6,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1389 chr13 80771699 . CA C 0 PASS DP=48;GPV=1;SPV=0.0058774;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,15:9,13:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1390 chr13 81039678 . G A 0 PASS DP=84;GPV=1;SPV=0.0051535;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:19,5:24,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1391 chr13 81457537 . T TTATATATATATATATA 0 PASS DP=27;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:2,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1392 chr13 81666746 . T A 0 PASS DP=56;GPV=1;SPV=0.052719;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1393 chr13 81717309 . G GTATATATATA 0 PASS DP=28;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:3,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1394 chr13 82246369 . ATG A 0 PASS DP=45;GPV=1;SPV=0.24135;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:18,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1395 chr13 82667206 . AT A 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1396 chr13 83096328 . GAA G 0 PASS DP=31;GPV=1;SPV=0.28142;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:17,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1397 chr13 85051181 . GT G 0 PASS DP=33;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:5,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1398 chr13 85437381 . G A 0 PASS DP=51;GPV=1;SPV=0.031686;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,8:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1399 chr13 85744942 . T TTA 0 PASS DP=38;GPV=1;SPV=0.22636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:11,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1400 chr13 86281340 . A C 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1401 chr13 86303868 . T TTATTATATTA 0 PASS DP=51;GPV=1;SPV=0.13793;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,14:7,5:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1402 chr13 86551900 . C CA 0 PASS DP=46;GPV=1;SPV=0.00025277;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:8,23:6,19:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1403 chr13 86847055 . G A 0 PASS DP=67;GPV=1;SPV=0.099672;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:16,2:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1404 chr13 87679835 . AGTATATATATAGTATATATAGTATATAT A 0 PASS DP=45;GPV=1;SPV=0.021743;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1405 chr13 87679863 . T TATA 0 PASS DP=44;GPV=1;SPV=0.0032306;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,7:2,2:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1406 chr13 87807205 . C CATATATATATAT 0 PASS DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:8,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1407 chr13 87961529 . T G 0 PASS DP=34;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,3:4,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1408 chr13 88130374 . TAAAC T 0 PASS DP=55;GPV=1;SPV=0.0091533;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:6,6:2,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1409 chr13 88700035 . CA C 0 PASS DP=36;GPV=1;SPV=0.0019186;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:5,11:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1410 chr13 88870847 . C A 0 PASS DP=35;GPV=1;SPV=0.0024264;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1411 chr13 89520126 . T TAA 0 PASS DP=37;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:8,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1412 chr13 89774044 . A G 0 PASS DP=69;GPV=1;SPV=0.011071;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:7,9:4,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1413 chr13 89782008 . C T 0 PASS DP=48;GPV=1;SPV=0.23683;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,5:21,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1414 chr13 90158149 . GT G 0 PASS DP=55;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:4,4:1,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1415 chr13 90467158 . T A 0 PASS DP=79;GPV=1;SPV=0.00059141;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:16,7:20,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1416 chr13 90654924 . A AT 0 PASS DP=45;GPV=1;SPV=0.00129;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:0,4:0,1:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1417 chr13 90715022 . A G 0 PASS DP=65;GPV=1;SPV=0.030397;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:12,4:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1418 chr13 90795124 . CTT C 0 PASS DP=43;GPV=1;SPV=0.25496;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1419 chr13 92109061 . G GT 0 PASS DP=36;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:6,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1420 chr13 92264878 . C CTGTG 0 PASS DP=50;GPV=1;SPV=0.021691;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:11,16:6,10:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1421 chr13 92513552 . T C 0 PASS DP=54;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:6,3:1,1:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1422 chr13 92513554 . T C 0 PASS DP=54;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:6,3:1,1:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1423 chr13 92965085 . T TA 0 PASS DP=40;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,11:6,7:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1424 chr13 93003909 . T TA 0 PASS DP=31;GPV=1;SPV=0.27368;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:4,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1425 chr13 93300166 . G T 0 PASS DP=84;GPV=1;SPV=0.01564;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:47,10:22,5:25,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1426 chr13 93324613 . A T 0 PASS DP=64;GPV=1;SPV=0.001548;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:4,8:3,6:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1427 chr13 93495730 . A T 0 PASS DP=43;GPV=1;SPV=3.4001e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,18:3,12:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1428 chr13 93596614 . T A 0 PASS DP=55;GPV=1;SPV=0.03028;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:8,5:6,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1429 chr13 94742090 . A AT 0 PASS DP=25;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:3,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1430 chr13 95264864 . CT C 0 PASS DP=36;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,13:5,9:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1431 chr13 95296135 . A AAC 0 PASS DP=44;GPV=1;SPV=0.0055603;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:13,12:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1432 chr13 95679199 . C CT 0 PASS DP=46;GPV=1;SPV=1.9163e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:9,22:5,15:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1433 chr13 97069725 . C A 0 PASS DP=80;GPV=1;SPV=0.00052251;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:38,20:17,9:21,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1434 chr13 97856273 . G T 0 PASS DP=77;GPV=1;SPV=0.0025106;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:13,6:24,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1435 chr13 97869478 . G A 0 PASS DP=85;GPV=1;SPV=0.00024683;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:15,10:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1436 chr13 98419483 . T TACACACAC 0 PASS DP=45;GPV=1;SPV=0.00056896;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,20:6,15:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1437 chr13 98647913 . A ATGTGTGTGTGTG 0 PASS DP=40;GPV=1;SPV=0.025586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,12:3,9:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1438 chr13 98781281 . G A 0 PASS DP=47;GPV=1;SPV=4.0454e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:6,19:3,10:3,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1439 chr13 100043996 . A AT 0 PASS DP=30;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:3,3:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1440 chr13 100577456 . G T 0 PASS DP=62;GPV=1;SPV=0.14744;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1441 chr13 100817236 . C T 0 PASS DP=27;GPV=1;SPV=0.0066141;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:0,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1442 chr13 101035623 . T TTG 0 PASS DP=56;GPV=1;SPV=0.043618;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:16,18:10,10:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1443 chr13 101280880 . C CT 0 PASS DP=36;GPV=1;SPV=0.00010594;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,18:6,16:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1444 chr13 101332397 . C CAA 0 PASS DP=33;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:9,10:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1445 chr13 101360230 . CCT C 0 PASS DP=51;GPV=1;SPV=0.0768;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:16,4:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1446 chr13 101439208 . C CTTT 0 PASS DP=30;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:4,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1447 chr13 101557807 . G A 0 PASS DP=65;GPV=1;SPV=0.002945;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:16,7:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1448 chr13 101847630 . C A 0 PASS DP=89;GPV=1;SPV=0.00010236;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:39,18:22,9:17,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1449 chr13 101973120 . T A 0 PASS DP=74;GPV=1;SPV=6.4484e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:50:2,12:1,6:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1450 chr13 102096003 . A G 0 PASS DP=61;GPV=1;SPV=0.0052174;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:6,6:4,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1451 chr13 102378627 . C A 0 PASS DP=62;GPV=1;SPV=0.017534;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1452 chr13 102452868 . A C 0 PASS DP=89;GPV=1;SPV=0.0047061;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:22,4:22,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1453 chr13 102534693 . TAA T 0 PASS DP=57;GPV=1;SPV=0.00012397;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:14,28:7,16:7,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1454 chr13 103040587 . T A 0 PASS DP=79;GPV=1;SPV=0.0013445;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:14,5:23,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1455 chr13 103349821 . T A 0 PASS DP=82;GPV=1;SPV=0.010634;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:45,11:29,6:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1456 chr13 103458657 . GAT G 0 PASS DP=62;GPV=1;SPV=0.0062769;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,7:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1457 chr13 104632370 . T C 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1458 chr13 105065149 . A G 0 PASS DP=77;GPV=1;SPV=0.030617;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:24,3:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1459 chr13 106474855 . T C 0 PASS DP=91;GPV=1;SPV=0.035139;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:34,8:21,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1460 chr13 107021828 . A AG 0 PASS DP=47;GPV=1;SPV=0.021691;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,5:3,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1461 chr13 108636367 . T G 0 PASS DP=41;GPV=1;SPV=0.063509;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,7:13,1:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1462 chr13 108795574 . G C 0 PASS DP=104;GPV=1;SPV=0.029243;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:28,4:29,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1463 chr13 109095234 . G T 0 PASS DP=86;GPV=1;SPV=1.5926e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:30,22:14,15:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1464 chr13 111491494 . C CTCTT 0 PASS DP=32;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,12:1,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1465 chr13 111859141 . G A 0 PASS DP=55;GPV=1;SPV=0.0091533;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:6,11:1,4:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1466 chr13 112192625 . T C 0 PASS DP=56;GPV=1;SPV=0.19619;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:20,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1467 chr13 112196519 . GTCCCCTGGTTTCCTGGT G 0 PASS DP=31;GPV=1;SPV=0.28142;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:4,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1468 chr13 112197128 . T G 0 PASS DP=42;GPV=1;SPV=0.01549;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:14,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1469 chr13 112238982 . C T 0 PASS DP=55;GPV=1;SPV=0.21542;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:7,1:29,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1470 chr13 112241832 . G A 0 PASS DP=46;GPV=1;SPV=0.014654;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,10:5,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1471 chr13 112296774 . G C 0 PASS DP=75;GPV=1;SPV=0.021694;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:39,18:27,4:12,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1472 chr13 112440897 . G A 0 PASS DP=21;GPV=1;SPV=4.4228e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,12:0,8:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1473 chr13 112598998 . C CA 0 PASS DP=62;GPV=1;SPV=0.037909;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:17,3:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1474 chr13 113089460 . C T 0 PASS DP=73;GPV=1;SPV=0.035813;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,6:23,3:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1475 chr13 113142386 . A C 0 PASS DP=53;GPV=1;SPV=0.0021645;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:37:0,5:0,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1476 chr13 113152420 . A G 0 PASS DP=92;GPV=1;SPV=0.0077782;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:50,11:21,6:29,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1477 chr13 113876048 . T A 0 PASS DP=51;GPV=1;SPV=0.16049;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:17,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1478 chr13 114020180 . T TAGC 0 PASS DP=33;GPV=1;SPV=0.0021876;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,16:7,15:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1479 chr13 114028253 . C G 0 PASS DP=44;GPV=1;SPV=0.048875;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:4,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1480 chr13 114032815 . C T 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1481 chr13 114032822 . C T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1482 chr14 18245579 . A G 0 PASS DP=26;GPV=1;SPV=0.048379;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:2,1:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1483 chr14 18245622 . C T 0 PASS DP=33;GPV=1;SPV=0.040398;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:1,3:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1484 chr14 18275569 . G A 0 PASS DP=49;GPV=1;SPV=0.049732;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:19,1:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1485 chr14 18312423 . CT C 0 PASS DP=31;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:8,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1486 chr14 18321677 . T A 0 PASS DP=119;GPV=1;SPV=0.003305;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:56,9:25,5:31,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1487 chr14 18605999 . C A 0 PASS DP=80;GPV=1;SPV=0.0035942;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:22,4:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1488 chr14 18611398 . G T 0 PASS DP=135;GPV=1;SPV=0.0091195;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:60,12:22,2:38,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1489 chr14 18616363 . T G 0 PASS DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1490 chr14 18625668 . T C 0 PASS DP=177;GPV=1;SPV=0.014869;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:95,15:47,8:48,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1491 chr14 18679857 . TA T 0 PASS DP=122;GPV=1;SPV=0.029181;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:58,14:24,9:34,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1492 chr14 18695892 . A G 0 PASS DP=98;GPV=1;SPV=0.028161;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:16,7:29,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1493 chr14 18876682 . A T 0 PASS DP=87;GPV=1;SPV=0.017984;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:16,4:23,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1494 chr14 18882906 . T G 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:0,0:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1495 chr14 18886836 . A G 0 PASS DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1496 chr14 18889655 . C T 0 PASS DP=147;GPV=1;SPV=0.0079997;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:68,10:37,7:31,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1497 chr14 18953973 . T C 0 PASS DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:4,3:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1498 chr14 18977294 . C T 0 PASS DP=122;GPV=1;SPV=0.039232;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:12,3:43,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1499 chr14 18979413 . G T 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1500 chr14 19060893 . C T 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1501 chr14 19073256 . T C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:10,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1502 chr14 19120520 . C A 0 PASS DP=148;GPV=1;SPV=0.041668;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:68,11:32,6:36,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1503 chr14 19121026 . T G 0 PASS DP=124;GPV=1;SPV=0.045497;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:55,13:30,8:25,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1504 chr14 19201477 . C T 0 PASS DP=116;GPV=1;SPV=0.0075608;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:50,20:21,17:29,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1505 chr14 19284994 . T A 0 PASS DP=224;GPV=1;SPV=0.04268;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:107,15:71,10:36,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1506 chr14 19292460 . G A 0 PASS DP=206;GPV=1;SPV=0.011417;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:105,20:46,13:59,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1507 chr14 19338757 . G C 0 PASS DP=72;GPV=1;SPV=0.022851;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:23,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1508 chr14 19366231 . G A 0 PASS DP=33;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1509 chr14 19399403 . A G 0 PASS DP=40;GPV=1;SPV=0.099968;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:16,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1510 chr14 19420974 . A C 0 PASS DP=87;GPV=1;SPV=0.015138;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:1,1:42,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1511 chr14 19432749 . A G 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:19,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1512 chr14 19466921 . C CACA 0 PASS DP=21;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,3:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1513 chr14 19480483 . G A 0 PASS DP=133;GPV=1;SPV=0.0081832;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:55,16:28,11:27,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1514 chr14 19681182 . C CA 0 PASS DP=131;GPV=1;SPV=0.015845;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:55,12:36,7:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1515 chr14 21666700 . GTT G 0 PASS DP=46;GPV=1;SPV=0.0045608;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,17:5,10:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1516 chr14 22058785 . A G 0 PASS DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1517 chr14 22817138 . T A 0 PASS DP=49;GPV=1;SPV=0.062277;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1518 chr14 23109669 . A G 0 PASS DP=68;GPV=1;SPV=5.5231e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,7:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1519 chr14 24670987 . A G 0 PASS DP=71;GPV=1;SPV=0.0053737;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:21,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1520 chr14 24719516 . ATGTG A 0 PASS DP=28;GPV=1;SPV=0.0054348;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1521 chr14 25124162 . C CAA 0 PASS DP=36;GPV=1;SPV=0.010217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,8:3,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1522 chr14 25570574 . A T 0 PASS DP=63;GPV=1;SPV=0.0002055;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:11,5:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1523 chr14 26041553 . AACAC A 0 PASS DP=25;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:2,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1524 chr14 26204430 . T C 0 PASS DP=37;GPV=1;SPV=0.49123;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,4:5,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1525 chr14 26734958 . C CA 0 PASS DP=44;GPV=1;SPV=0.010225;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:9,6:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1526 chr14 26771706 . A ATT 0 PASS DP=38;GPV=1;SPV=0.0046784;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,11:4,5:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1527 chr14 27101424 . C G 0 PASS DP=87;GPV=1;SPV=6.057e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:35,16:17,7:18,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1528 chr14 27387169 . A T 0 PASS DP=66;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:5,3:2,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1529 chr14 27827512 . C CTTT 0 PASS DP=43;GPV=1;SPV=0.041509;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:12,8:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1530 chr14 28593149 . G GTT 0 PASS DP=27;GPV=1;SPV=0.3064;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1531 chr14 29171225 . A ATTT 0 PASS DP=47;GPV=1;SPV=0.16205;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,6:15,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1532 chr14 30193259 . A T 0 PASS DP=57;GPV=1;SPV=0.028362;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1533 chr14 31124809 . AT A 0 PASS DP=47;GPV=1;SPV=0.014776;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,10:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1534 chr14 33024172 . A G 0 PASS DP=63;GPV=1;SPV=0.077206;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:15,5:21,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1535 chr14 33981523 . AAC A 0 PASS DP=55;GPV=1;SPV=0.024242;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:31:1,3:0,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1536 chr14 34463652 . CAG C 0 PASS DP=56;GPV=1;SPV=0.001388;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:4,6:13,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1537 chr14 34876605 . A AT 0 PASS DP=43;GPV=1;SPV=0.0032683;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:4,6:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1538 chr14 35131533 . T G 0 PASS DP=57;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1539 chr14 35557098 . A ATGTGTG 0 PASS DP=28;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,6:5,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1540 chr14 35727310 . CATAT C 0 PASS DP=35;GPV=1;SPV=5.3843e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,10:2,5:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1541 chr14 36083488 . T C 0 PASS DP=37;GPV=1;SPV=0.0032051;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:3,2:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1542 chr14 36824460 . T G 0 PASS DP=52;GPV=1;SPV=0.0014372;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1543 chr14 39761386 . A G 0 PASS DP=60;GPV=1;SPV=0.10738;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1544 chr14 40247215 . T C 0 PASS DP=61;GPV=1;SPV=0.035377;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:16,3:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1545 chr14 41023865 . T C 0 PASS DP=63;GPV=1;SPV=0.015886;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:11,4:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1546 chr14 41044383 . A AAAGAAG 0 PASS DP=57;GPV=1;SPV=0.044901;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,5:9,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1547 chr14 41079335 . CAAAAAA C 0 PASS DP=42;GPV=1;SPV=0.0032765;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,7:1,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1548 chr14 41405734 . T TA 0 PASS DP=30;GPV=1;SPV=0.091388;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1549 chr14 41886019 . C CAAA 0 PASS DP=26;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:9,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1550 chr14 44191188 . ATGTG A 0 PASS DP=48;GPV=1;SPV=0.009628;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,10:7,7:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1551 chr14 47827124 . C G 0 PASS DP=70;GPV=1;SPV=0.00077059;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:16,6:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1552 chr14 49009544 . G A 0 PASS DP=67;GPV=1;SPV=0.0095989;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:15,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1553 chr14 49603511 . T TTTC 0 PASS DP=31;GPV=1;SPV=0.043382;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1554 chr14 50023209 . G A 0 PASS DP=44;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,4:7,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1555 chr14 50344469 . T G 0 PASS DP=33;GPV=1;SPV=0.10613;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:6,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1556 chr14 50945542 . C CT 0 PASS DP=26;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1557 chr14 50957320 . A G 0 PASS DP=53;GPV=1;SPV=0.030556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,5:6,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1558 chr14 50964037 . C CAAA 0 PASS DP=25;GPV=1;SPV=0.17217;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:5,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1559 chr14 51324352 . T C 0 PASS DP=50;GPV=1;SPV=0.0027568;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1560 chr14 51932246 . C CA 0 PASS DP=28;GPV=1;SPV=0.0040134;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:4,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1561 chr14 52104297 . G GGTGTGTGTGT 0 PASS DP=40;GPV=1;SPV=0.0020744;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:6,9:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1562 chr14 52625481 . CA C 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1563 chr14 52807896 . C G 0 PASS DP=28;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:5,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1564 chr14 53213985 . T G 0 PASS DP=53;GPV=1;SPV=0.0032284;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,6:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1565 chr14 54085541 . CA C 0 PASS DP=31;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,8:2,6:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1566 chr14 54614462 . G GA 0 PASS DP=56;GPV=1;SPV=6.3368e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:10,8:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1567 chr14 54683675 . A C 0 PASS DP=63;GPV=1;SPV=0.015088;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:12,4:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1568 chr14 54684619 . C G 0 PASS DP=25;GPV=1;SPV=0.014142;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1569 chr14 55109888 . CA C 0 PASS DP=24;GPV=1;SPV=0.0088413;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:4,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1570 chr14 55281255 . T TAAA 0 PASS DP=25;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:2,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1571 chr14 55295533 . T C 0 PASS DP=61;GPV=1;SPV=0.019947;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:14,4:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1572 chr14 56031544 . C CTT 0 PASS DP=28;GPV=1;SPV=0.25463;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:9,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1573 chr14 59048006 . A G 0 PASS DP=60;GPV=1;SPV=8.0194e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:15,24:9,10:6,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1574 chr14 60008136 . T C 0 PASS DP=66;GPV=1;SPV=0.0040978;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1575 chr14 60695300 . G A 0 PASS DP=54;GPV=1;SPV=0.016495;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,5:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1576 chr14 61341395 . A G 0 PASS DP=68;GPV=1;SPV=0.0055492;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:15,2:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1577 chr14 62242991 . T C 0 PASS DP=58;GPV=1;SPV=0.010153;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1578 chr14 62599975 . A G 0 PASS DP=43;GPV=1;SPV=0.040363;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1579 chr14 64014929 . TTATATATATATA T 0 PASS DP=21;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:5,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1580 chr14 64358998 . T A 0 PASS DP=46;GPV=1;SPV=0.071698;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1581 chr14 64359307 . T TG 0 PASS DP=26;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:1,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1582 chr14 64518904 . G GTATATA 0 PASS DP=20;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1583 chr14 65307895 . GT G 0 PASS DP=52;GPV=1;SPV=0.0029526;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,16:7,10:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1584 chr14 66048070 . T G 0 PASS DP=38;GPV=1;SPV=0.01095;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,10:5,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1585 chr14 67506487 . T G 0 PASS DP=51;GPV=1;SPV=0.00067152;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1586 chr14 69180568 . T G 0 PASS DP=80;GPV=1;SPV=0.0006809;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:13,5:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1587 chr14 69249069 . A C 0 PASS DP=44;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1588 chr14 69533808 . A G 0 PASS DP=58;GPV=1;SPV=0.057437;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:15,2:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1589 chr14 72113100 . A ATG 0 PASS DP=59;GPV=1;SPV=0.11505;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:16,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1590 chr14 72148129 . TAA T 0 PASS DP=23;GPV=1;SPV=0.002173;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:1,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1591 chr14 72664643 . T A 0 PASS DP=43;GPV=1;SPV=0.020413;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:4,1:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1592 chr14 72915303 . C T 0 PASS DP=43;GPV=1;SPV=0.0033813;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:14,3:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1593 chr14 73095606 . C CA 0 PASS DP=43;GPV=1;SPV=0.013111;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:6,8:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1594 chr14 74477088 . A T 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1595 chr14 75494381 . G A 0 PASS DP=39;GPV=1;SPV=0.0026122;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:8,6:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1596 chr14 75636481 . C T 0 PASS DP=53;GPV=1;SPV=0.0047469;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:13,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1597 chr14 77645594 . T TAA 0 PASS DP=33;GPV=1;SPV=0.0058007;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,9:1,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1598 chr14 77678087 . C CAAA 0 PASS DP=24;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1599 chr14 78225972 . TTG T 0 PASS DP=42;GPV=1;SPV=0.057853;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,3:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1600 chr14 78225986 . T G 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1601 chr14 79119795 . T C 0 PASS DP=50;GPV=1;SPV=0.00013352;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:16,19:8,7:8,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1602 chr14 79427830 . C CA 0 PASS DP=42;GPV=1;SPV=0.021798;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:7,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1603 chr14 79515195 . A T 0 PASS DP=75;GPV=1;SPV=0.0004233;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:17,6:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1604 chr14 79624800 . TTTG T 0 PASS DP=43;GPV=1;SPV=0.0091926;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:5,7:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1605 chr14 79629839 . G A 0 PASS DP=57;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,4:9,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1606 chr14 81226099 . T A 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1607 chr14 81807963 . C CT 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1608 chr14 82950356 . C CAA 0 PASS DP=33;GPV=1;SPV=0.1839;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:7,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1609 chr14 83686764 . T A 0 PASS DP=56;GPV=1;SPV=0.00063544;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:16,6:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1610 chr14 83855476 . C A 0 PASS DP=50;GPV=1;SPV=0.011145;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:7,3:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1611 chr14 84276774 . CT C 0 PASS DP=31;GPV=1;SPV=0.091248;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1612 chr14 84695017 . T TACACACAC 0 PASS DP=34;GPV=1;SPV=0.040508;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1613 chr14 85595251 . A C 0 PASS DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:8,3:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1614 chr14 85927893 . T A 0 PASS DP=37;GPV=1;SPV=0.046683;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1615 chr14 89392637 . CT C 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1616 chr14 89772721 . T A 0 PASS DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:1,0:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1617 chr14 90352446 . C CA 0 PASS DP=27;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1618 chr14 91365168 . T TCCCTCAC 0 PASS DP=70;GPV=1;SPV=0.0094957;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:19,6:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1619 chr14 91988633 . T TA 0 PASS DP=45;GPV=1;SPV=0.0087645;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:13,8:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1620 chr14 92167014 . C CTT 0 PASS DP=25;GPV=1;SPV=0.031857;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,7:0,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1621 chr14 94472507 . G C 0 PASS DP=59;GPV=1;SPV=0.028465;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:13,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1622 chr14 94737322 . CA C 0 PASS DP=42;GPV=1;SPV=0.012829;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1623 chr14 95066559 . T C 0 PASS DP=32;GPV=1;SPV=0.046615;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1624 chr14 95066560 . C A 0 PASS DP=35;GPV=1;SPV=0.045954;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1625 chr14 95242261 . T C 0 PASS DP=39;GPV=1;SPV=0.020642;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:11,7:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1626 chr14 95479224 . CAAAAA C 0 PASS DP=36;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,6:4,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1627 chr14 95558897 . A G 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1628 chr14 96403114 . T TTAAATAAATAAA 0 PASS DP=36;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:1,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1629 chr14 97903510 . T G 0 PASS DP=63;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1630 chr14 97936171 . T TTTTTC 0 PASS DP=33;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:4,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1631 chr14 98204657 . A G 0 PASS DP=63;GPV=1;SPV=0.0020369;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:4,5:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1632 chr14 98492110 . C T 0 PASS DP=65;GPV=1;SPV=0.00030588;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:13,10:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1633 chr14 98744899 . GT G 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1634 chr14 98781380 . T C 0 PASS DP=34;GPV=1;SPV=0.035372;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1635 chr14 100621256 . G C 0 PASS DP=61;GPV=1;SPV=0.032567;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:16,5:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1636 chr14 102228700 . A C 0 PASS DP=50;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1637 chr14 102315820 . TACACACACACACACACACACACACAC T 0 PASS DP=41;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:8,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1638 chr14 103572787 . A AT 0 PASS DP=31;GPV=1;SPV=0.17135;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:7,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1639 chr14 103952216 . ATATATTTTTTTTTTTTT A 0 PASS DP=19;GPV=1;SPV=0.12821;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:3,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1640 chr14 104499251 . G C 0 PASS DP=51;GPV=1;SPV=0.020919;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:15,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1641 chr14 104566594 . C G 0 PASS DP=76;GPV=1;SPV=0.0025995;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:17,4:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1642 chr14 104683291 . C T 0 PASS DP=49;GPV=1;SPV=0.0067142;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:11,15:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1643 chr14 104685999 . G A 0 PASS DP=16;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:2,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1644 chr14 105327896 . G A 0 PASS DP=82;GPV=1;SPV=0.0019162;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:26,7:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1645 chr14 105633937 . T A 0 PASS DP=112;GPV=1;SPV=0.036062;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:52,10:27,5:25,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1646 chr14 105639924 . C T 0 PASS DP=111;GPV=1;SPV=0.032003;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:56,9:36,7:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1647 chr14 105654804 . A G 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:12,1:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1648 chr14 105699669 . A T 0 PASS DP=137;GPV=1;SPV=0.029471;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:58,15:35,9:23,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1649 chr14 106220507 . TTC T 0 PASS DP=58;GPV=1;SPV=0.0023163;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:5,11:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1650 chr14 106626217 . A G 0 PASS DP=73;GPV=1;SPV=1.7288e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:10,9:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1651 chr15 18533186 . T G 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1652 chr15 19434997 . C T 0 PASS DP=55;GPV=1;SPV=0.077483;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,5:25,5:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1653 chr15 19859576 . C CA 0 PASS DP=32;GPV=1;SPV=0.0024274;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,12:1,10:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1654 chr15 19913009 . A AATGTGGTC 0 PASS DP=109;GPV=1;SPV=0.049607;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:20,2:27,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1655 chr15 20019797 . C T 0 PASS DP=237;GPV=1;SPV=0.042489;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:101,17:60,8:41,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1656 chr15 20142002 . C T 0 PASS DP=63;GPV=1;SPV=0.015088;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:1,2:28,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1657 chr15 20142988 . C T 0 PASS DP=225;GPV=1;SPV=0.021552;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:105,24:52,12:53,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1658 chr15 20166342 . CA C 0 PASS DP=136;GPV=1;SPV=0.015443;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:57,8:37,6:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1659 chr15 20183018 . T C 0 PASS DP=52;GPV=1;SPV=0.24396;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1660 chr15 20273978 . G A 0 PASS DP=416;GPV=1;SPV=0.0025103;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:196,27:120,18:76,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1661 chr15 20309395 . G A 0 PASS DP=282;GPV=1;SPV=0.037602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:100,12:57,8:43,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1662 chr15 20314793 . T C 0 PASS DP=70;GPV=1;SPV=0.016979;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:15,8:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1663 chr15 20669457 . G C 0 PASS DP=481;GPV=1;SPV=0.040058;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:240,39:109,15:131,24
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1664 chr15 20686189 . TA T 0 PASS DP=202;GPV=1;SPV=0.035492;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:91,21:55,14:36,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1665 chr15 20686218 . C T 0 PASS DP=188;GPV=1;SPV=0.0019526;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:75,27:46,18:29,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1666 chr15 20733898 . G T 0 PASS DP=262;GPV=1;SPV=0.048201;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:129,15:78,10:51,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1667 chr15 20738533 . A T 0 PASS DP=68;GPV=1;SPV=0.090639;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:0,0:34,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1668 chr15 20749113 . C T 0 PASS DP=286;GPV=1;SPV=0.045336;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:121,19:68,8:53,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1669 chr15 20749323 . G A 0 PASS DP=257;GPV=1;SPV=0.048639;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:125,19:38,6:87,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1670 chr15 20756584 . G A 0 PASS DP=288;GPV=1;SPV=0.019754;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:129,29:84,18:45,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1671 chr15 20785986 . G C 0 PASS DP=229;GPV=1;SPV=0.028546;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:115,21:53,10:62,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1672 chr15 20900873 . T C 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:18,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1673 chr15 20940208 . C A 0 PASS DP=345;GPV=1;SPV=0.01286;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:172,21:73,4:99,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1674 chr15 21024854 . G A 0 PASS DP=307;GPV=1;SPV=0.033866;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:143,26:58,12:85,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1675 chr15 21061789 . GA G 0 PASS DP=130;GPV=1;SPV=0.030763;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,8:35,7:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1676 chr15 21069794 . A G 0 PASS DP=205;GPV=1;SPV=0.037504;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:94,19:46,12:48,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1677 chr15 21122270 . A C 0 PASS DP=102;GPV=1;SPV=0.028316;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:50,9:32,5:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1678 chr15 21266784 . C T 0 PASS DP=444;GPV=1;SPV=0.021614;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:261:222,39:100,18:122,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1679 chr15 21272114 . C T 0 PASS DP=428;GPV=1;SPV=0.029006;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:235:210,25:119,18:91,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1680 chr15 21310653 . G A 0 PASS DP=156;GPV=1;SPV=0.018842;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:57,9:20,1:37,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1681 chr15 21360144 . G A 0 PASS DP=184;GPV=1;SPV=0.043197;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:83,12:47,7:36,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1682 chr15 21374563 . C T 0 PASS DP=369;GPV=1;SPV=0.038401;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:192,26:104,14:88,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1683 chr15 21431840 . G C 0 PASS DP=312;GPV=1;SPV=0.011137;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:161,21:76,7:85,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1684 chr15 21482389 . C T 0 PASS DP=157;GPV=1;SPV=0.007533;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:73,13:47,8:26,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1685 chr15 21525853 . CA C 0 PASS DP=92;GPV=1;SPV=0.023519;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,7:15,3:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1686 chr15 21535775 . T TG 0 PASS DP=93;GPV=1;SPV=0.036691;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:22,3:22,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1687 chr15 21550026 . C T 0 PASS DP=144;GPV=1;SPV=0.0026245;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:71,19:38,4:33,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1688 chr15 21562361 . A G 0 PASS DP=166;GPV=1;SPV=0.016109;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:82,19:29,6:53,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1689 chr15 21586885 . A T 0 PASS DP=52;GPV=1;SPV=0.032319;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:22,9:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1690 chr15 21657253 . C A 0 PASS DP=44;GPV=1;SPV=0.012544;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:3,1:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1691 chr15 21755344 . A AT 0 PASS DP=32;GPV=1;SPV=0.0012236;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:3,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1692 chr15 22085514 . A T 0 PASS DP=36;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:12,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1693 chr15 22250653 . A G 0 PASS DP=211;GPV=1;SPV=0.011067;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:103,21:51,13:52,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1694 chr15 22253145 . T C 0 PASS DP=286;GPV=1;SPV=0.007382;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:123,26:67,13:56,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1695 chr15 22266345 . A G 0 PASS DP=256;GPV=1;SPV=0.023147;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:123,24:60,14:63,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1696 chr15 22295485 . A G 0 PASS DP=224;GPV=1;SPV=0.04268;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:107,15:50,7:57,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1697 chr15 22424314 . GC G 0 PASS DP=130;GPV=1;SPV=0.02354;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:57,12:31,8:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1698 chr15 22436984 . C T 0 PASS DP=62;GPV=1;SPV=0.053073;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:24,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1699 chr15 24813200 . G T 0 PASS DP=44;GPV=1;SPV=0.030898;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:15,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1700 chr15 25261750 . A AAT 0 PASS DP=18;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:1,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1701 chr15 26060244 . G T 0 PASS DP=60;GPV=1;SPV=0.0040413;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,6:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1702 chr15 26510669 . T TAC 0 PASS DP=41;GPV=1;SPV=0.021122;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1703 chr15 26709515 . CTT C 0 PASS DP=25;GPV=1;SPV=0.0063246;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,8:2,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1704 chr15 27002763 . AGG A 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1705 chr15 27002769 . G A 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1706 chr15 27255740 . C G 0 PASS DP=59;GPV=1;SPV=0.0011386;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1707 chr15 28513574 . A G 0 PASS DP=46;GPV=1;SPV=0.036642;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:6,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1708 chr15 28528140 . T TAC 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1709 chr15 29517443 . C T 0 PASS DP=67;GPV=1;SPV=6.2405e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:8,5:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1710 chr15 30095073 . C T 0 PASS DP=58;GPV=1;SPV=0.00084999;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:11,2:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1711 chr15 30227814 . G A 0 PASS DP=54;GPV=1;SPV=0.0026644;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:8,8:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1712 chr15 30443176 . T C 0 PASS DP=41;GPV=1;SPV=0.0024454;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,8:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1713 chr15 30521653 . C T 0 PASS DP=81;GPV=1;SPV=0.029764;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:14,5:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1714 chr15 30929794 . TATA T 0 PASS DP=19;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1715 chr15 31144918 . G T 0 PASS DP=53;GPV=1;SPV=0.025864;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:16,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1716 chr15 32187948 . C A 0 PASS DP=76;GPV=1;SPV=0.048263;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:16,3:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1717 chr15 32567664 . G T 0 PASS DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1718 chr15 32573700 . C T 0 PASS DP=72;GPV=1;SPV=0.025704;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:15,5:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1719 chr15 32864382 . T C 0 PASS DP=48;GPV=1;SPV=0.022687;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,5:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1720 chr15 33664591 . A G 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1721 chr15 36916095 . G C 0 PASS DP=51;GPV=1;SPV=0.012389;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:16,2:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1722 chr15 38094375 . G A 0 PASS DP=52;GPV=1;SPV=0.079729;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,4:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1723 chr15 39696870 . CTGTGTGTGTGTGTGTGTGTGTG C 0 PASS DP=18;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1724 chr15 39916855 . G C 0 PASS DP=65;GPV=1;SPV=2.3992e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:11,7:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1725 chr15 40143255 . T A 0 PASS DP=35;GPV=1;SPV=0.01192;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,6:2,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1726 chr15 40358260 . G A 0 PASS DP=78;GPV=1;SPV=0.012197;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:23,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1727 chr15 40861101 . G A 0 PASS DP=58;GPV=1;SPV=0.0035182;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:14,3:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1728 chr15 40960264 . C T 0 PASS DP=54;GPV=1;SPV=0.00071485;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,9:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1729 chr15 41271250 . G A 0 PASS DP=30;GPV=1;SPV=0.036896;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:5,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1730 chr15 41301970 . TAAAAAAAA T 0 PASS DP=36;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:8,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1731 chr15 43510513 . A C 0 PASS DP=62;GPV=1;SPV=0.083134;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1732 chr15 43554620 . T TAC 0 PASS DP=39;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1733 chr15 43559845 . T C 0 PASS DP=63;GPV=1;SPV=0.013521;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:14,2:10,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1734 chr15 43875367 . T A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1735 chr15 45724917 . C T 0 PASS DP=42;GPV=1;SPV=0.0027092;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:8,3:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1736 chr15 47573209 . A C 0 PASS DP=68;GPV=1;SPV=0.0050608;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:14,6:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1737 chr15 47820587 . C T 0 PASS DP=37;GPV=1;SPV=0.036036;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1738 chr15 50087356 . T A 0 PASS DP=54;GPV=1;SPV=0.055494;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1739 chr15 51177593 . G A 0 PASS DP=40;GPV=1;SPV=0.065489;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1740 chr15 51418432 . A C 0 PASS DP=57;GPV=1;SPV=0.00014188;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:9,5:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1741 chr15 51584112 . G A 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1742 chr15 51747017 . T TA 0 PASS DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:11,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1743 chr15 51963897 . C CAA 0 PASS DP=31;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:7,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1744 chr15 52801334 . A G 0 PASS DP=65;GPV=1;SPV=4.5156e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,8:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1745 chr15 53068572 . TTG T 0 PASS DP=48;GPV=1;SPV=0.0072753;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:5,5:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1746 chr15 53317388 . A AT 0 PASS DP=41;GPV=1;SPV=0.3107;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1747 chr15 56920920 . T G 0 PASS DP=65;GPV=1;SPV=0.00049463;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:16,9:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1748 chr15 57688496 . C CTA 0 PASS DP=44;GPV=1;SPV=0.023342;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,6:9,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1749 chr15 57723856 . C CAA 0 PASS DP=27;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:7,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1750 chr15 58377542 . A T 0 PASS DP=65;GPV=1;SPV=0.0071404;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:14,8:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1751 chr15 58573125 . T TAAAA 0 PASS DP=34;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:8,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1752 chr15 59448526 . A AAGATAGATAGAT 0 PASS DP=47;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:2,4:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1753 chr15 59448587 . G GT 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:6,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1754 chr15 59518117 . C T 0 PASS DP=62;GPV=1;SPV=0.0030715;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:14,8:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1755 chr15 59761668 . T C 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1756 chr15 59761671 . TCTC T 0 PASS DP=41;GPV=1;SPV=0.087777;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:1,1:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1757 chr15 60060005 . G C 0 PASS DP=38;GPV=1;SPV=0.03809;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:16,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1758 chr15 60065017 . CT C 0 PASS DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1759 chr15 60624399 . C T 0 PASS DP=27;GPV=1;SPV=0.01971;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1760 chr15 61277734 . T TC 0 PASS DP=42;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:3,4:1,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1761 chr15 61293976 . G GAGAGAGAAAGAGAGAGAGAGAT 0 PASS DP=29;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,8:0,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1762 chr15 61304939 . G T 0 PASS DP=78;GPV=1;SPV=0.00010991;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:18,4:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1763 chr15 61716841 . G A 0 PASS DP=57;GPV=1;SPV=0.016244;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,10:9,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1764 chr15 61914878 . TAAAAAAA T 0 PASS DP=25;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,8:3,6:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1765 chr15 62437754 . T G 0 PASS DP=54;GPV=1;SPV=0.022061;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:13,2:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1766 chr15 62693955 . CTTTTTTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.090909;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:2,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1767 chr15 62741750 . T C 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1768 chr15 63376598 . CTT C 0 PASS DP=32;GPV=1;SPV=0.030729;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1769 chr15 63581459 . C G 0 PASS DP=36;GPV=1;SPV=0.0044617;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,14:5,9:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1770 chr15 65400078 . C A 0 PASS DP=55;GPV=1;SPV=0.0024549;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:16,7:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1771 chr15 65994017 . C T 0 PASS DP=65;GPV=1;SPV=0.028734;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:13,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1772 chr15 69127249 . CAAA C 0 PASS DP=36;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1773 chr15 69330881 . G T 0 PASS DP=61;GPV=1;SPV=0.0016174;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:17,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1774 chr15 69556773 . T C 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:12,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1775 chr15 71391815 . A G 0 PASS DP=64;GPV=1;SPV=0.002405;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:13,7:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1776 chr15 71459160 . CTT C 0 PASS DP=26;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1777 chr15 72665926 . G A 0 PASS DP=95;GPV=1;SPV=0.043774;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:30,10:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1778 chr15 74111138 . T TA 0 PASS DP=24;GPV=1;SPV=0.0066141;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:0,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1779 chr15 74818014 . G GA 0 PASS DP=33;GPV=1;SPV=0.03685;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:10,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1780 chr15 74964463 . C G 0 PASS DP=58;GPV=1;SPV=0.017892;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:14,6:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1781 chr15 77458794 . G A 0 PASS DP=74;GPV=1;SPV=0.00011945;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:17,6:13,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1782 chr15 77509555 . CGTGTGT C 0 PASS DP=29;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1783 chr15 80030913 . TCCAA T 0 PASS DP=43;GPV=1;SPV=0.037765;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:6,3:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1784 chr15 80031051 . CAACCTATGCAAT C 0 PASS DP=56;GPV=1;SPV=0.12627;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:20,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1785 chr15 82079195 . A ATTT 0 PASS DP=35;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:5,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1786 chr15 82354580 . C G 0 PASS DP=65;GPV=1;SPV=0.0069028;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:15,4:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1787 chr15 82363710 . T C 0 PASS DP=39;GPV=1;SPV=0.022366;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:10,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1788 chr15 82369924 . CTG C 0 PASS DP=24;GPV=1;SPV=0.009324;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,6:1,1:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1789 chr15 82580413 . G A 0 PASS DP=50;GPV=1;SPV=0.029893;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:19,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1790 chr15 83055658 . C G 0 PASS DP=52;GPV=1;SPV=0.00096763;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:10,6:4,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1791 chr15 84181735 . A G 0 PASS DP=72;GPV=1;SPV=0.001132;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:16,8:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1792 chr15 84361182 . G T 0 PASS DP=47;GPV=1;SPV=0.01412;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:4,5:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1793 chr15 84563456 . C CA 0 PASS DP=32;GPV=1;SPV=0.011374;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,10:3,7:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1794 chr15 84708205 . C CAA 0 PASS DP=31;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:8,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1795 chr15 84777695 . T C 0 PASS DP=41;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,8:2,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1796 chr15 85351617 . CT C 0 PASS DP=41;GPV=1;SPV=0.0047011;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:7,5:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1797 chr15 85896280 . G GTC 0 PASS DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:5,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1798 chr15 86143457 . A T 0 PASS DP=67;GPV=1;SPV=0.0017947;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1799 chr15 88117084 . C G 0 PASS DP=62;GPV=1;SPV=1.6212e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:8,8:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1800 chr15 88944963 . T C 0 PASS DP=32;GPV=1;SPV=0.019346;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:6,6:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1801 chr15 90444281 . A G 0 PASS DP=35;GPV=1;SPV=0.02914;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,6:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1802 chr15 90517510 . C CTT 0 PASS DP=31;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:7,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1803 chr15 90836843 . A AT 0 PASS DP=46;GPV=1;SPV=0.006865;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,15:3,9:0,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1804 chr15 91417686 . G T 0 PASS DP=58;GPV=1;SPV=0.00052;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:11,8:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1805 chr15 91631790 . CTG C 0 PASS DP=50;GPV=1;SPV=0.0026899;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:11,13:4,9:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1806 chr15 92889476 . CA C 0 PASS DP=37;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:5,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1807 chr15 92889487 . A G 0 PASS DP=27;GPV=1;SPV=0.0057971;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1808 chr15 95367844 . T TAC 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,3:3,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1809 chr15 95796674 . AAAGAAAG A 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1810 chr15 96327526 . G A 0 PASS DP=64;GPV=1;SPV=0.12945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1811 chr15 97169140 . C T 0 PASS DP=62;GPV=1;SPV=0.00021002;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,6:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1812 chr15 98497459 . GTTT G 0 PASS DP=32;GPV=1;SPV=0.17677;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:11,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1813 chr15 98869434 . C CT 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:10,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1814 chr15 100620534 . A G 0 PASS DP=32;GPV=1;SPV=0.019346;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:10,3:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1815 chr15 100672746 . CTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1816 chr15 101615634 . TGCATGCACTGTGGATGTGGCCTGCCCTCTAAGTGCC T 0 PASS DP=76;GPV=1;SPV=0.046824;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:18,6:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1817 chr15 101766901 . T G 0 PASS DP=44;GPV=1;SPV=0.0031408;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:10,3:4,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1818 chr15 101870043 . T C 0 PASS DP=32;GPV=1;SPV=0.10105;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:5,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1819 chr15 101892736 . C T 0 PASS DP=28;GPV=1;SPV=0.15775;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:3,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1820 chr16 12060 . G C 0 PASS DP=72;GPV=1;SPV=0.0493;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:15,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1821 chr16 29811 . T C 0 PASS DP=68;GPV=1;SPV=0.023415;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:23,9:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1822 chr16 239457 . CA C 0 PASS DP=49;GPV=1;SPV=0.00044356;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,18:11,14:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1823 chr16 382087 . C CG 0 PASS DP=36;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1824 chr16 661016 . G C 0 PASS DP=18;GPV=1;SPV=0.0067873;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:0,1:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1825 chr16 665325 . C T 0 PASS DP=56;GPV=1;SPV=0.072845;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:11,2:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1826 chr16 1267169 . CA C 0 PASS DP=37;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:9,9:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1827 chr16 1329545 . G A 0 PASS DP=47;GPV=1;SPV=0.0013799;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:7,7:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1828 chr16 1604274 . C CGTGTGTGT 0 PASS DP=46;GPV=1;SPV=0.023692;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,10:9,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1829 chr16 2263435 . C G 0 PASS DP=76;GPV=1;SPV=2.233e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:16,6:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1830 chr16 2861376 . A G 0 PASS DP=62;GPV=1;SPV=0.011419;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:14,3:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1831 chr16 3190749 . T TA 0 PASS DP=48;GPV=1;SPV=0.068571;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,6:17,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1832 chr16 4181197 . TA T 0 PASS DP=34;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,5:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1833 chr16 4197421 . C CTTTT 0 PASS DP=25;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:7,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1834 chr16 4262559 . T C 0 PASS DP=70;GPV=1;SPV=5.0036e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:10,8:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1835 chr16 4889232 . G T 0 PASS DP=27;GPV=1;SPV=0.11404;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:8,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1836 chr16 5010188 . CAA C 0 PASS DP=24;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1837 chr16 5255342 . A C 0 PASS DP=41;GPV=1;SPV=0.029934;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:5,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1838 chr16 5825800 . T G 0 PASS DP=53;GPV=1;SPV=0.015558;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:12,4:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1839 chr16 6253673 . GCA G 0 PASS DP=38;GPV=1;SPV=0.23992;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:9,1:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1840 chr16 6398866 . C T 0 PASS DP=86;GPV=1;SPV=0.010118;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:23,6:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1841 chr16 6480050 . G GA 0 PASS DP=28;GPV=1;SPV=0.0079095;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,11:5,10:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1842 chr16 7557619 . C CA 0 PASS DP=21;GPV=1;SPV=0.0081269;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:3,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1843 chr16 7932626 . CAT C 0 PASS DP=45;GPV=1;SPV=0.026014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1844 chr16 9607235 . CA C 0 PASS DP=34;GPV=1;SPV=0.0015608;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:3,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1845 chr16 10802286 . A G 0 PASS DP=37;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,6:5,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1846 chr16 11330221 . ATT A 0 PASS DP=24;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,8:3,7:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1847 chr16 12019587 . T TATAG 0 PASS DP=53;GPV=1;SPV=0.0045492;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1848 chr16 12075215 . G T 0 PASS DP=59;GPV=1;SPV=0.0011386;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:10,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1849 chr16 12851012 . C CT 0 PASS DP=31;GPV=1;SPV=0.0737;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:7,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1850 chr16 13987297 . CT C 0 PASS DP=35;GPV=1;SPV=0.010728;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1851 chr16 14329386 . C CA 0 PASS DP=37;GPV=1;SPV=0.020376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1852 chr16 14371882 . G A 0 PASS DP=61;GPV=1;SPV=0.15773;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,4:10,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1853 chr16 14834687 . G GT 0 PASS DP=33;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:6,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1854 chr16 14938413 . C T 0 PASS DP=86;GPV=1;SPV=0.036143;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:19,2:19,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1855 chr16 14953358 . T C 0 PASS DP=42;GPV=1;SPV=0.075461;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:18,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1856 chr16 15127800 . C T 0 PASS DP=98;GPV=1;SPV=0.0088777;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:24,5:23,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1857 chr16 15167877 . C CAA 0 PASS DP=51;GPV=1;SPV=0.0014624;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:10,5:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1858 chr16 15302112 . G GAC 0 PASS DP=107;GPV=1;SPV=0.035771;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:25,2:22,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1859 chr16 15307890 . T G 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,0:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1860 chr16 15360843 . C T 0 PASS DP=24;GPV=1;SPV=0.0065876;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,0:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1861 chr16 15472860 . C CT 0 PASS DP=42;GPV=1;SPV=0.019258;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:12,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1862 chr16 16261241 . C A 0 PASS DP=61;GPV=1;SPV=0.060295;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:15,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1863 chr16 16374023 . C T 0 PASS DP=57;GPV=1;SPV=0.040223;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:13,1:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1864 chr16 16412983 . G A 0 PASS DP=33;GPV=1;SPV=0.0045524;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:9,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1865 chr16 16422341 . G A 0 PASS DP=23;GPV=1;SPV=0.20553;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:5,1:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1866 chr16 16449463 . GAGAGAGAGAGACAGAGAC G 0 PASS DP=48;GPV=1;SPV=0.022357;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:14,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1867 chr16 16497319 . G GTTTT 0 PASS DP=98;GPV=1;SPV=0.054086;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:39,5:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1868 chr16 16599305 . A G 0 PASS DP=34;GPV=1;SPV=0.0083426;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:5,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1869 chr16 16605268 . C CTTTCT 0 PASS DP=86;GPV=1;SPV=0.041446;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,10:14,2:22,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1870 chr16 16657672 . TTTTCTTTCTTTCTTTCTTTCTTTC T 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:1,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1871 chr16 16658443 . C A 0 PASS DP=28;GPV=1;SPV=0.012836;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:5,8:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1872 chr16 16779097 . A G 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:1,1:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1873 chr16 17174040 . T G 0 PASS DP=69;GPV=1;SPV=0.0012459;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:14,5:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1874 chr16 17226704 . G T 0 PASS DP=64;GPV=1;SPV=0.0074013;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,6:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1875 chr16 17320482 . C CT 0 PASS DP=19;GPV=1;SPV=0.002997;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,8:0,4:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1876 chr16 17571475 . C A 0 PASS DP=56;GPV=1;SPV=0.0041203;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1877 chr16 17868664 . A T 0 PASS DP=21;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1878 chr16 18103845 . C A 0 PASS DP=39;GPV=1;SPV=0.014881;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1879 chr16 18348559 . A G 0 PASS DP=121;GPV=1;SPV=0.036718;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,11:23,7:30,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1880 chr16 18702360 . GTGGTGGCA G 0 PASS DP=24;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1881 chr16 20146599 . C G 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1882 chr16 20541679 . TTC T 0 PASS DP=36;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,12:8,7:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1883 chr16 21664982 . A G 0 PASS DP=52;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,4:7,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1884 chr16 21851256 . TGGGGA T 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1885 chr16 23169118 . G A 0 PASS DP=17;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:3,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1886 chr16 23867056 . C T 0 PASS DP=32;GPV=1;SPV=0.057743;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:4,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1887 chr16 23981588 . T C 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1888 chr16 24265449 . A G 0 PASS DP=47;GPV=1;SPV=0.26001;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:21,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1889 chr16 25904143 . GATGGATGGATGA G 0 PASS DP=55;GPV=1;SPV=0.044124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:9,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1890 chr16 26341276 . A G 0 PASS DP=59;GPV=1;SPV=0.024469;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:14,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1891 chr16 26374868 . G A 0 PASS DP=46;GPV=1;SPV=0.040129;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,5:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1892 chr16 26766055 . TA T 0 PASS DP=60;GPV=1;SPV=0.003503;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,6:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1893 chr16 26770773 . G A 0 PASS DP=47;GPV=1;SPV=0.021659;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,10:9,7:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1894 chr16 26770775 . TAAATGATA T 0 PASS DP=45;GPV=1;SPV=0.026993;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,9:8,6:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1895 chr16 27855740 . AG A 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:4,11:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1896 chr16 28225839 . CT C 0 PASS DP=23;GPV=1;SPV=0.011625;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1897 chr16 28579203 . G C 0 PASS DP=44;GPV=1;SPV=0.0088148;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:7,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1898 chr16 29343974 . TTTTTTG T 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1899 chr16 30219809 . A G 0 PASS DP=33;GPV=1;SPV=0.039921;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1900 chr16 30586575 . G GT 0 PASS DP=22;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1901 chr16 31062783 . G A 0 PASS DP=18;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1902 chr16 31268395 . C G 0 PASS DP=76;GPV=1;SPV=0.00035646;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:22,8:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1903 chr16 31716997 . GT G 0 PASS DP=25;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1904 chr16 31962146 . T A 0 PASS DP=64;GPV=1;SPV=0.026412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:12,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1905 chr16 32069030 . T C 0 PASS DP=47;GPV=1;SPV=0.021726;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1906 chr16 32192091 . G C 0 PASS DP=71;GPV=1;SPV=0.01768;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:10,8:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1907 chr16 32303731 . G T 0 PASS DP=132;GPV=1;SPV=0.01064;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:53,17:25,5:28,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1908 chr16 32327877 . C T 0 PASS DP=46;GPV=1;SPV=0.086635;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:12,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1909 chr16 32626055 . C CTT 0 PASS DP=46;GPV=1;SPV=0.040221;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:14,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1910 chr16 32883828 . GCCACTGACTCGGGCC G 0 PASS DP=51;GPV=1;SPV=0.031686;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1911 chr16 32925585 . G A 0 PASS DP=84;GPV=1;SPV=0.011252;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:21,5:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1912 chr16 33017866 . A T 0 PASS DP=54;GPV=1;SPV=0.0089143;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:3,3:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1913 chr16 33018589 . G A 0 PASS DP=47;GPV=1;SPV=0.035086;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1914 chr16 33337144 . C T 0 PASS DP=174;GPV=1;SPV=0.049179;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:87,18:40,10:47,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1915 chr16 33582391 . G GCAA 0 PASS DP=91;GPV=1;SPV=0.030653;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:22,9:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1916 chr16 33625825 . T C 0 PASS DP=99;GPV=1;SPV=0.038713;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:20,3:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1917 chr16 33727080 . CTTT C 0 PASS DP=40;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,8:3,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1918 chr16 33733632 . C T 0 PASS DP=294;GPV=1;SPV=0.014655;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:135,32:61,14:74,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1919 chr16 33918582 . T G 0 PASS DP=76;GPV=1;SPV=0.022734;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:14,2:16,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1920 chr16 34014924 . A G 0 PASS DP=31;GPV=1;SPV=0.028638;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,6:2,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1921 chr16 34165244 . G A 0 PASS DP=108;GPV=1;SPV=0.012235;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:32,6:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1922 chr16 34174419 . C CA 0 PASS DP=173;GPV=1;SPV=0.038871;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:77,19:41,12:36,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1923 chr16 34716233 . T C 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:19,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1924 chr16 35478339 . C T 0 PASS DP=98;GPV=1;SPV=0.00073344;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:19,4:21,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1925 chr16 36100822 . CAT C 0 PASS DP=207;GPV=1;SPV=0.040003;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:92,22:50,12:42,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1926 chr16 36111053 . C T 0 PASS DP=146;GPV=1;SPV=0.031943;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:64,13:27,3:37,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1927 chr16 36120992 . GA G 0 PASS DP=247;GPV=1;SPV=0.0098825;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:113,15:41,8:72,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1928 chr16 37989067 . G C 0 PASS DP=86;GPV=1;SPV=0.044889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:20,3:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1929 chr16 38130001 . G A 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1930 chr16 38166303 . T A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1931 chr16 46743532 . G A 0 PASS DP=72;GPV=1;SPV=0.00034236;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:12,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1932 chr16 46780086 . A T 0 PASS DP=65;GPV=1;SPV=0.00024776;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:13,6:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1933 chr16 47675519 . A T 0 PASS DP=45;GPV=1;SPV=0.046254;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1934 chr16 48416181 . T A 0 PASS DP=45;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1935 chr16 48772945 . C T 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1936 chr16 49099105 . CAT C 0 PASS DP=36;GPV=1;SPV=0.089257;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1937 chr16 49873866 . CTT C 0 PASS DP=25;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:2,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1938 chr16 51288370 . AAAAGAAAGAAAG A 0 PASS DP=45;GPV=1;SPV=0.0091476;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,7:8,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1939 chr16 51644253 . T C 0 PASS DP=48;GPV=1;SPV=0.038709;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:21,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1940 chr16 53025955 . T C 0 PASS DP=22;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1941 chr16 53360790 . AT A 0 PASS DP=28;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:9,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1942 chr16 54074919 . T A 0 PASS DP=45;GPV=1;SPV=0.0401;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,8:6,3:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1943 chr16 54538394 . G T 0 PASS DP=70;GPV=1;SPV=0.0014418;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:16,5:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1944 chr16 54980414 . C CT 0 PASS DP=28;GPV=1;SPV=0.00041135;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:1,7:1,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1945 chr16 55027099 . C CAA 0 PASS DP=59;GPV=1;SPV=0.014369;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,6:11,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1946 chr16 55920846 . A T 0 PASS DP=49;GPV=1;SPV=0.0015295;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:13,4:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1947 chr16 56256698 . C G 0 PASS DP=54;GPV=1;SPV=0.062847;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,4:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1948 chr16 56540665 . T C 0 PASS DP=29;GPV=1;SPV=0.042146;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1949 chr16 56620729 . A G 0 PASS DP=34;GPV=1;SPV=0.0051075;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,2:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1950 chr16 56620736 . A G 0 PASS DP=33;GPV=1;SPV=0.01828;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,2:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1951 chr16 56755268 . G T 0 PASS DP=73;GPV=1;SPV=0.00076085;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:12,8:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1952 chr16 57311441 . G GGTGTGTGT 0 PASS DP=37;GPV=1;SPV=0.020719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:5,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1953 chr16 58171984 . T A 0 PASS DP=18;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1954 chr16 58758216 . TTATATATATA T 0 PASS DP=42;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,13:5,6:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1955 chr16 58831783 . CTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCT C 0 PASS DP=24;GPV=1;SPV=0.2248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:12,3:5,2:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1956 chr16 60475590 . TACACAC T 0 PASS DP=34;GPV=1;SPV=0.059571;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:14,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1957 chr16 60639011 . T G 0 PASS DP=63;GPV=1;SPV=0.0022162;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:14,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1958 chr16 60991226 . G T 0 PASS DP=60;GPV=1;SPV=0.0018974;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:7,5:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1959 chr16 61446059 . A AATATATATATATATAT 0 PASS DP=38;GPV=1;SPV=0.11076;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:8,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1960 chr16 61726301 . A C 0 PASS DP=66;GPV=1;SPV=0.0016045;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:13,8:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1961 chr16 61960085 . ATATG A 0 PASS DP=36;GPV=1;SPV=0.16193;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:9,2:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1962 chr16 62506719 . G T 0 PASS DP=56;GPV=1;SPV=0.0012998;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:13,4:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1963 chr16 62890211 . CT C 0 PASS DP=45;GPV=1;SPV=0.010225;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:4,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1964 chr16 62913519 . C A 0 PASS DP=63;GPV=1;SPV=0.0029833;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:13,7:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1965 chr16 63084059 . GTGTGTGTGTA G 0 PASS DP=40;GPV=1;SPV=0.0038562;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,8:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1966 chr16 63658223 . C CAA 0 PASS DP=30;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,6:4,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1967 chr16 64058866 . G T 0 PASS DP=61;GPV=1;SPV=0.00035192;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:7,7:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1968 chr16 64535517 . A T 0 PASS DP=47;GPV=1;SPV=0.0029614;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,9:4,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1969 chr16 64738125 . T C 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1970 chr16 65060356 . G T 0 PASS DP=45;GPV=1;SPV=0.00042646;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:6,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1971 chr16 65537057 . G GTATA 0 PASS DP=21;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:2,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1972 chr16 68456296 . C CT 0 PASS DP=27;GPV=1;SPV=0.0019324;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:5,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1973 chr16 68609146 . CA C 0 PASS DP=22;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1974 chr16 68743351 . C CT 0 PASS DP=30;GPV=1;SPV=0.023079;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:3,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1975 chr16 68793930 . CA C 0 PASS DP=26;GPV=1;SPV=0.0016018;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:3,8:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1976 chr16 69732501 . C G 0 PASS DP=56;GPV=1;SPV=0.00040437;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:7,6:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1977 chr16 69738472 . G A 0 PASS DP=45;GPV=1;SPV=0.0026128;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:7,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1978 chr16 72112803 . G C 0 PASS DP=75;GPV=1;SPV=0.0001497;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:14,6:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1979 chr16 73099710 . C CA 0 PASS DP=39;GPV=1;SPV=0.10911;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:13,9:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1980 chr16 73753986 . A ATGTGTGTGTGTGTG 0 PASS DP=41;GPV=1;SPV=0.032072;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,8:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1981 chr16 75259850 . T TAA 0 PASS DP=32;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,9:3,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1982 chr16 75586220 . T C 0 PASS DP=55;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:14,6:8,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1983 chr16 76862808 . T TAA 0 PASS DP=36;GPV=1;SPV=0.033431;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1984 chr16 77311504 . A G 0 PASS DP=58;GPV=1;SPV=0.00011008;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:9,6:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1985 chr16 78358866 . C CTTTTT 0 PASS DP=28;GPV=1;SPV=0.030556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1986 chr16 78481724 . A AGTGT 0 PASS DP=24;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1987 chr16 79091779 . G GT 0 PASS DP=27;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:5,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1988 chr16 79673815 . A C 0 PASS DP=66;GPV=1;SPV=0.0029415;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:14,6:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1989 chr16 80411036 . A G 0 PASS DP=54;GPV=1;SPV=0.008813;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1990 chr16 81033591 . C CTT 0 PASS DP=17;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:0,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1991 chr16 81197668 . C CA 0 PASS DP=32;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:8,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1992 chr16 81304104 . T TAAA 0 PASS DP=48;GPV=1;SPV=0.013049;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:8,5:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1993 chr16 82298353 . A T 0 PASS DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:9,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1994 chr16 82953245 . C T 0 PASS DP=59;GPV=1;SPV=0.0030549;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:20,2:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1995 chr16 83000574 . CT C 0 PASS DP=29;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1996 chr16 83286770 . G GTA 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1997 chr16 84050735 . GC G 0 PASS DP=80;GPV=1;SPV=0.016523;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:11,7:27,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1998 chr16 87434994 . A C 0 PASS DP=32;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
1999 chr16 88236683 . A G 0 PASS DP=50;GPV=1;SPV=0.04614;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2000 chr16 88558660 . A C 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:2,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2001 chr16 89093509 . T G 0 PASS DP=64;GPV=1;SPV=0.00061107;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:16,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2002 chr17 425873 . C CT 0 PASS DP=26;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:8,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2003 chr17 884247 . T TA 0 PASS DP=48;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,8:8,6:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2004 chr17 942690 . G A 0 PASS DP=31;GPV=1;SPV=0.10134;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2005 chr17 1062786 . C T 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:5,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2006 chr17 1098075 . CT C 0 PASS DP=42;GPV=1;SPV=0.0031524;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:6,7:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2007 chr17 2218028 . CA C 0 PASS DP=48;GPV=1;SPV=0.0047709;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:6,6:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2008 chr17 3699052 . G GACACACACACACAC 0 PASS DP=36;GPV=1;SPV=0.035819;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:7,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2009 chr17 4640699 . A G 0 PASS DP=79;GPV=1;SPV=0.014135;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:12,5:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2010 chr17 5226508 . C T 0 PASS DP=51;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,4:10,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2011 chr17 5749632 . G A 0 PASS DP=34;GPV=1;SPV=0.15275;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2012 chr17 6296216 . A ATGTGTG 0 PASS DP=36;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,6:7,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2013 chr17 6300670 . A C 0 PASS DP=63;GPV=1;SPV=0.00046907;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:12,5:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2014 chr17 7662623 . CT C 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2015 chr17 7754833 . C T 0 PASS DP=85;GPV=1;SPV=9.577e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:31,18:15,7:16,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2016 chr17 7793522 . TTC T 0 PASS DP=46;GPV=1;SPV=0.036676;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2017 chr17 7871493 . T C 0 PASS DP=55;GPV=1;SPV=0.0035252;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:10,3:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2018 chr17 8087257 . C G 0 PASS DP=64;GPV=1;SPV=0.056596;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2019 chr17 8339237 . GTT G 0 PASS DP=54;GPV=1;SPV=0.0033069;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:11,8:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2020 chr17 8343815 . AGTGTGT A 0 PASS DP=43;GPV=1;SPV=0.043511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,2:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2021 chr17 8363840 . T TC 0 PASS DP=29;GPV=1;SPV=0.22332;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:15,3:7,2:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2022 chr17 10005162 . T C 0 PASS DP=46;GPV=1;SPV=0.29013;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,5:9,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2023 chr17 11294120 . G A 0 PASS DP=67;GPV=1;SPV=0.0030237;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:12,2:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2024 chr17 11350186 . T A 0 PASS DP=46;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2025 chr17 11727047 . CAAA C 0 PASS DP=26;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:6,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2026 chr17 12197620 . G C 0 PASS DP=72;GPV=1;SPV=0.0020908;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,7:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2027 chr17 12396663 . AGT A 0 PASS DP=32;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:6,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2028 chr17 12398606 . A T 0 PASS DP=67;GPV=1;SPV=3.7651e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:6,8:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2029 chr17 12558857 . C CT 0 PASS DP=21;GPV=1;SPV=0.002331;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:0,7:0,6:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2030 chr17 12989097 . C A 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2031 chr17 13328022 . A G 0 PASS DP=57;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,4:7,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2032 chr17 14544331 . T C 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2033 chr17 15075577 . T A 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2034 chr17 15543021 . G C 0 PASS DP=73;GPV=1;SPV=0.016944;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:14,11:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2035 chr17 15757702 . T C 0 PASS DP=48;GPV=1;SPV=0.26909;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:14,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2036 chr17 16476732 . ATT A 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2037 chr17 16848058 . G A 0 PASS DP=38;GPV=1;SPV=0.0087022;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2038 chr17 17297016 . T A 0 PASS DP=65;GPV=1;SPV=0.002945;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:15,5:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2039 chr17 17750551 . G A 0 PASS DP=65;GPV=1;SPV=0.0014199;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:10,4:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2040 chr17 19820088 . C T 0 PASS DP=46;GPV=1;SPV=0.00074174;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,5:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2041 chr17 20504029 . G A 0 PASS DP=63;GPV=1;SPV=0.0006045;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:12,3:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2042 chr17 21839232 . GC G 0 PASS DP=105;GPV=1;SPV=0.020857;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:47,11:21,6:26,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2043 chr17 21841577 . T G 0 PASS DP=184;GPV=1;SPV=0.0024614;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:82,14:45,2:37,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2044 chr17 21987800 . GTGGAATGGAA G 0 PASS DP=68;GPV=1;SPV=0.049244;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:20,4:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2045 chr17 22352507 . A G 0 PASS DP=60;GPV=1;SPV=0.003548;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:14,7:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2046 chr17 22392478 . C G 0 PASS DP=69;GPV=1;SPV=0.036308;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:27,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2047 chr17 22846601 . T A 0 PASS DP=73;GPV=1;SPV=0.083965;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:3,0:33,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2048 chr17 22882404 . G A 0 PASS DP=180;GPV=1;SPV=0.004564;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:75,21:36,13:39,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2049 chr17 22927792 . A T 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:6,4:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2050 chr17 22927816 . G A 0 PASS DP=34;GPV=1;SPV=0.0055231;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:7,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2051 chr17 22963319 . C A 0 PASS DP=99;GPV=1;SPV=0.031592;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:17,5:27,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2052 chr17 23169314 . T A 0 PASS DP=108;GPV=1;SPV=0.0094581;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:38,6:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2053 chr17 23169339 . G C 0 PASS DP=117;GPV=1;SPV=0.0074015;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:52,10:41,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2054 chr17 23189772 . A T 0 PASS DP=83;GPV=1;SPV=0.02406;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:14,4:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2055 chr17 23209679 . C T 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:0,0:25,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2056 chr17 26623519 . A T 0 PASS DP=40;GPV=1;SPV=0.099968;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:0,1:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2057 chr17 26624350 . T C 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2058 chr17 26638376 . A G 0 PASS DP=40;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:9,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2059 chr17 26771693 . G A 0 PASS DP=107;GPV=1;SPV=0.037516;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:47,9:19,3:28,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2060 chr17 27034281 . A G 0 PASS DP=57;GPV=1;SPV=0.010988;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,5:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2061 chr17 27981065 . GGAA G 0 PASS DP=46;GPV=1;SPV=0.0972;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:15,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2062 chr17 28000235 . G C 0 PASS DP=55;GPV=1;SPV=0.0086388;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:14,3:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2063 chr17 28001490 . T C 0 PASS DP=55;GPV=1;SPV=0.0012831;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,2:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2064 chr17 28540780 . A T 0 PASS DP=51;GPV=1;SPV=0.23366;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:9,4:5,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2065 chr17 28754286 . GT G 0 PASS DP=33;GPV=1;SPV=0.0033988;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:9,5:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2066 chr17 29072202 . CTT C 0 PASS DP=29;GPV=1;SPV=0.0071032;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:6,7:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2067 chr17 29439864 . TAAAAAAAAA T 0 PASS DP=34;GPV=1;SPV=0.027772;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,13:0,6:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2068 chr17 30221426 . C T 0 PASS DP=28;GPV=1;SPV=0.013095;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2069 chr17 32092192 . CACAT C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2070 chr17 32977656 . G T 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:5,7:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2071 chr17 33657757 . T TAA 0 PASS DP=36;GPV=1;SPV=0.021615;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:8,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2072 chr17 34732698 . T A 0 PASS DP=62;GPV=1;SPV=0.0017311;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2073 chr17 36462975 . G A 0 PASS DP=36;GPV=1;SPV=0.089257;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2074 chr17 37119589 . A AACACAC 0 PASS DP=38;GPV=1;SPV=0.03771;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2075 chr17 37449619 . ATT A 0 PASS DP=46;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:7,12:1,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2076 chr17 37453759 . AT A 0 PASS DP=29;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:9,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2077 chr17 37812533 . TTTG T 0 PASS DP=34;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:2,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2078 chr17 37840903 . T A 0 PASS DP=45;GPV=1;SPV=0.0005812;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:11,8:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2079 chr17 37880005 . T TA 0 PASS DP=34;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2080 chr17 39314795 . C CTT 0 PASS DP=32;GPV=1;SPV=0.1671;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2081 chr17 40985156 . C A 0 PASS DP=66;GPV=1;SPV=0.00019486;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:18,8:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2082 chr17 41110058 . A C 0 PASS DP=81;GPV=1;SPV=0.0091119;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:20,6:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2083 chr17 41494407 . GT G 0 PASS DP=76;GPV=1;SPV=0.046045;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:17,4:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2084 chr17 41844550 . T A 0 PASS DP=39;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2085 chr17 42096902 . G A 0 PASS DP=41;GPV=1;SPV=0.0021297;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2086 chr17 42668821 . G T 0 PASS DP=57;GPV=1;SPV=0.12093;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,5:9,1:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2087 chr17 42905430 . AT A 0 PASS DP=38;GPV=1;SPV=0.028751;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,7:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2088 chr17 42969401 . CTTTT C 0 PASS DP=29;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,9:3,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2089 chr17 42990874 . G T 0 PASS DP=55;GPV=1;SPV=0.0024629;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2090 chr17 43657006 . TTCTTTC T 0 PASS DP=46;GPV=1;SPV=0.22036;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:5,2:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2091 chr17 43719734 . G C 0 PASS DP=57;GPV=1;SPV=0.0063654;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:9,1:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2092 chr17 43835250 . C CA 0 PASS DP=21;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2093 chr17 43931978 . TTC T 0 PASS DP=49;GPV=1;SPV=0.026941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:13,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2094 chr17 44041277 . AAAAAAAAAAAC A 0 PASS DP=31;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:6,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2095 chr17 44141903 . G A 0 PASS DP=89;GPV=1;SPV=1.9695e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,15:13,11:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2096 chr17 44160573 . TA T 0 PASS DP=61;GPV=1;SPV=0.0010264;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,1:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2097 chr17 44312367 . A C 0 PASS DP=52;GPV=1;SPV=0.00053327;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,2:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2098 chr17 44414145 . G A 0 PASS DP=37;GPV=1;SPV=0.13408;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2099 chr17 44657378 . CTTT C 0 PASS DP=28;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:5,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2100 chr17 44727864 . AT A 0 PASS DP=41;GPV=1;SPV=0.011706;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,3:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2101 chr17 44950763 . C CT 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,4:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2102 chr17 45662311 . A T 0 PASS DP=62;GPV=1;SPV=0.0001093;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:10,12:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2103 chr17 46245030 . A G 0 PASS DP=27;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2104 chr17 46688576 . T C 0 PASS DP=28;GPV=1;SPV=0.00041408;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:3,3:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2105 chr17 47653271 . A ATT 0 PASS DP=34;GPV=1;SPV=0.018626;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2106 chr17 47794116 . C T 0 PASS DP=76;GPV=1;SPV=0.00066634;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:10,8:23,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2107 chr17 48069597 . C CA 0 PASS DP=28;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2108 chr17 49071922 . CT C 0 PASS DP=40;GPV=1;SPV=0.0076326;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:11,10:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2109 chr17 49268682 . C T 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:21,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2110 chr17 50128482 . TCA T 0 PASS DP=45;GPV=1;SPV=0.0019469;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:3,9:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2111 chr17 50530493 . C T 0 PASS DP=49;GPV=1;SPV=0.031065;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:9,3:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2112 chr17 51455573 . G GGTGTGT 0 PASS DP=60;GPV=1;SPV=0.0018565;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:8,7:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2113 chr17 52285783 . CAA C 0 PASS DP=35;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2114 chr17 53560037 . A T 0 PASS DP=60;GPV=1;SPV=0.0059126;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2115 chr17 54778400 . G T 0 PASS DP=59;GPV=1;SPV=0.087068;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:25,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2116 chr17 55128925 . C CT 0 PASS DP=27;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2117 chr17 56495338 . A T 0 PASS DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2118 chr17 56616510 . A C 0 PASS DP=66;GPV=1;SPV=0.0052281;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:8,2:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2119 chr17 56881321 . GTATATATATTTATATATAATATATGTATATATATATT G 0 PASS DP=25;GPV=1;SPV=0.006865;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2120 chr17 57216321 . C CTGTGTG 0 PASS DP=41;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:3,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2121 chr17 57632941 . C T 0 PASS DP=81;GPV=1;SPV=0.015393;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:27,3:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2122 chr17 57896767 . C CT 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2123 chr17 58074121 . T C 0 PASS DP=23;GPV=1;SPV=0.20553;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:9,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2124 chr17 58482709 . C CAAA 0 PASS DP=21;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2125 chr17 59015364 . G C 0 PASS DP=42;GPV=1;SPV=0.014023;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:5,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2126 chr17 59209081 . C CA 0 PASS DP=23;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2127 chr17 60102060 . GTAAT G 0 PASS DP=49;GPV=1;SPV=0.0019854;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,6:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2128 chr17 60982795 . T G 0 PASS DP=59;GPV=1;SPV=0.0020871;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:17,3:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2129 chr17 61609694 . CA C 0 PASS DP=34;GPV=1;SPV=0.00050078;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,14:2,11:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2130 chr17 61613251 . C T 0 PASS DP=64;GPV=1;SPV=0.10395;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:16,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2131 chr17 62122094 . CA C 0 PASS DP=34;GPV=1;SPV=0.029588;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2132 chr17 62356003 . A C 0 PASS DP=64;GPV=1;SPV=0.00025079;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2133 chr17 62913422 . A C 0 PASS DP=46;GPV=1;SPV=0.047988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:7,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2134 chr17 63942258 . GGTGTGTGTGT G 0 PASS DP=40;GPV=1;SPV=0.015475;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,3:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2135 chr17 65093583 . C CTT 0 PASS DP=27;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,5:7,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2136 chr17 65566160 . G A 0 PASS DP=71;GPV=1;SPV=0.0034859;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:21,8:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2137 chr17 66000371 . G A 0 PASS DP=60;GPV=1;SPV=0.00017604;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,6:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2138 chr17 66038110 . A AAAAAAAAAAAG 0 PASS DP=25;GPV=1;SPV=0.002331;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:0,6:0,3:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2139 chr17 66169282 . C CTT 0 PASS DP=31;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2140 chr17 66411242 . CT C 0 PASS DP=29;GPV=1;SPV=0.002451;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,10:0,6:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2141 chr17 66694480 . CAAA C 0 PASS DP=28;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:10,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2142 chr17 66965185 . CATAT C 0 PASS DP=41;GPV=1;SPV=0.029934;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:9,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2143 chr17 68575791 . T TACACACACACACACACAC 0 PASS DP=26;GPV=1;SPV=0.0067873;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,6:3,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2144 chr17 68880247 . T A 0 PASS DP=56;GPV=1;SPV=0.0041203;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,2:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2145 chr17 68880248 . C A 0 PASS DP=58;GPV=1;SPV=0.0018932;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,2:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2146 chr17 69966706 . G T 0 PASS DP=52;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2147 chr17 70472124 . T G 0 PASS DP=70;GPV=1;SPV=0.00059303;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:17,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2148 chr17 70629593 . A C 0 PASS DP=58;GPV=1;SPV=0.074772;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:14,3:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2149 chr17 71590803 . G T 0 PASS DP=48;GPV=1;SPV=0.014152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:13,5:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2150 chr17 72809202 . T C 0 PASS DP=47;GPV=1;SPV=0.034636;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:7,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2151 chr17 73276046 . AT A 0 PASS DP=33;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:3,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2152 chr17 74012978 . G GGAA 0 PASS DP=28;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:6,5:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2153 chr17 75696377 . C A 0 PASS DP=36;GPV=1;SPV=0.035545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,2:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2154 chr17 75805810 . A ATGTGTGTGTGTG 0 PASS DP=37;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2155 chr17 76707291 . CTTTTTTTTTTTTTT C 0 PASS DP=31;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:3,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2156 chr17 77216407 . T C 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,1:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2157 chr17 77630903 . C CTT 0 PASS DP=22;GPV=1;SPV=0.026515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2158 chr17 78631456 . CA C 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2159 chr17 79860195 . C T 0 PASS DP=73;GPV=1;SPV=0.043808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:19,3:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2160 chr17 81426445 . G T 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2161 chr17 81613127 . T TAAA 0 PASS DP=42;GPV=1;SPV=0.0011057;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:2,11:2,5:0,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2162 chr17 81646679 . C CAA 0 PASS DP=31;GPV=1;SPV=0.016499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:3,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2163 chr17 81950348 . G A 0 PASS DP=31;GPV=1;SPV=0.00089264;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:4,4:4,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2164 chr17 82198650 . C G 0 PASS DP=49;GPV=1;SPV=0.0081305;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2165 chr17 82938894 . C T 0 PASS DP=26;GPV=1;SPV=0.066403;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2166 chr18 893183 . A AAT 0 PASS DP=20;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2167 chr18 897058 . CTTT C 0 PASS DP=23;GPV=1;SPV=0.0005865;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:2,9:2,3:0,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2168 chr18 1962849 . C CT 0 PASS DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2169 chr18 2689852 . TAAAA T 0 PASS DP=20;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:4,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2170 chr18 4034037 . C CT 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2171 chr18 5538995 . A T 0 PASS DP=31;GPV=1;SPV=0.060606;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,3:1,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2172 chr18 5779294 . G T 0 PASS DP=43;GPV=1;SPV=0.10777;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:10,2:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2173 chr18 6676936 . T A 0 PASS DP=50;GPV=1;SPV=2.9309e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:3,6:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2174 chr18 7160890 . C CA 0 PASS DP=25;GPV=1;SPV=0.047431;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2175 chr18 7410240 . C CAA 0 PASS DP=16;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2176 chr18 7968241 . C T 0 PASS DP=26;GPV=1;SPV=0.0084281;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2177 chr18 8855725 . C CAA 0 PASS DP=40;GPV=1;SPV=0.0084306;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2178 chr18 10250784 . A G 0 PASS DP=29;GPV=1;SPV=0.0046977;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,14:2,10:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2179 chr18 10733448 . A ATTT 0 PASS DP=32;GPV=1;SPV=0.012217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,7:1,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2180 chr18 11849513 . A AG 0 PASS DP=58;GPV=1;SPV=0.17398;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2181 chr18 12285764 . CTTT C 0 PASS DP=34;GPV=1;SPV=0.064336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2182 chr18 12319132 . TCC T 0 PASS DP=39;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,4:4,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2183 chr18 13743322 . C CA 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2184 chr18 13880126 . G A 0 PASS DP=39;GPV=1;SPV=0.26692;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,4:9,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2185 chr18 14672212 . A G 0 PASS DP=37;GPV=1;SPV=0.22636;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2186 chr18 14689035 . G GTAAA 0 PASS DP=46;GPV=1;SPV=0.016865;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:4,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2187 chr18 15317868 . CTAAT C 0 PASS DP=58;GPV=1;SPV=0.025917;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2188 chr18 15393025 . T TG 0 PASS DP=100;GPV=1;SPV=0.034393;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:45,13:20,4:25,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2189 chr18 15519095 . A C 0 PASS DP=138;GPV=1;SPV=0.026373;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:76,11:15,2:61,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2190 chr18 15521441 . A T 0 PASS DP=79;GPV=1;SPV=0.004315;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:9,10:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2191 chr18 15530255 . A G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2192 chr18 15540190 . G T 0 PASS DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:17,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2193 chr18 15601295 . C T 0 PASS DP=49;GPV=1;SPV=0.0006152;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2194 chr18 15662256 . A G 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:15,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2195 chr18 15679441 . T G 0 PASS DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2196 chr18 15691083 . G A 0 PASS DP=45;GPV=1;SPV=0.043486;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:2,1:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2197 chr18 15709768 . G C 0 PASS DP=60;GPV=1;SPV=0.16867;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:1,0:34,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2198 chr18 15875759 . A C 0 PASS DP=132;GPV=1;SPV=0.025693;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:22,3:34,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2199 chr18 17777501 . C T 0 PASS DP=42;GPV=1;SPV=0.24484;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:24,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2200 chr18 19275617 . C G 0 PASS DP=97;GPV=1;SPV=0.03903;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,11:32,7:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2201 chr18 21434499 . ATG A 0 PASS DP=38;GPV=1;SPV=0.011679;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2202 chr18 21525014 . A G 0 PASS DP=35;GPV=1;SPV=0.011224;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2203 chr18 21815198 . T C 0 PASS DP=40;GPV=1;SPV=0.0089978;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:8,11:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2204 chr18 22095497 . C G 0 PASS DP=73;GPV=1;SPV=0.000471;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:8,6:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2205 chr18 22232784 . CCATA C 0 PASS DP=62;GPV=1;SPV=0.12627;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,4:18,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2206 chr18 22882407 . T C 0 PASS DP=73;GPV=1;SPV=2.2133e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:11,13:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2207 chr18 23429287 . C T 0 PASS DP=57;GPV=1;SPV=0.012731;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:10,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2208 chr18 24460380 . A C 0 PASS DP=58;GPV=1;SPV=0.015039;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,8:9,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2209 chr18 24460381 . C A 0 PASS DP=61;GPV=1;SPV=0.044901;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,5:9,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2210 chr18 25113764 . A G 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2211 chr18 25113765 . C G 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2212 chr18 25806054 . T TC 0 PASS DP=45;GPV=1;SPV=0.2201;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,7:8,2:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2213 chr18 25989683 . A G 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2214 chr18 26027701 . A G 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2215 chr18 26208457 . G T 0 PASS DP=52;GPV=1;SPV=0.00053327;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:12,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2216 chr18 26677728 . AAAG A 0 PASS DP=32;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:6,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2217 chr18 29103921 . T G 0 PASS DP=62;GPV=1;SPV=0.083134;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:17,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2218 chr18 29997088 . G A 0 PASS DP=44;GPV=1;SPV=0.0060788;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:2,5:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2219 chr18 29997109 . A ATGCTGACAGTGATATAAACAATGAAGTCCAGGC 0 PASS DP=36;GPV=1;SPV=0.016716;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:1,4:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2220 chr18 31960484 . TG T 0 PASS DP=27;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2221 chr18 32586426 . C A 0 PASS DP=48;GPV=1;SPV=0.011884;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2222 chr18 32782481 . C T 0 PASS DP=18;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:0,0:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2223 chr18 32841833 . G C 0 PASS DP=60;GPV=1;SPV=0.00085567;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:15,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2224 chr18 33193264 . CAA C 0 PASS DP=24;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2225 chr18 33379173 . A AAT 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2226 chr18 33403489 . C CA 0 PASS DP=42;GPV=1;SPV=0.029259;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,7:13,5:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2227 chr18 34095251 . A ATGTGTGTGTGTGTG 0 PASS DP=34;GPV=1;SPV=0.050426;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:6,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2228 chr18 34839177 . A C 0 PASS DP=86;GPV=1;SPV=2.655e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:8,3:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2229 chr18 35957482 . G GAGAGAA 0 PASS DP=39;GPV=1;SPV=0.011174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,6:7,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2230 chr18 37186564 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:5,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2231 chr18 37391026 . G A 0 PASS DP=60;GPV=1;SPV=0.00068948;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:12,5:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2232 chr18 38275952 . G A 0 PASS DP=55;GPV=1;SPV=0.0062765;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:12,2:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2233 chr18 40365027 . T C 0 PASS DP=61;GPV=1;SPV=0.00020252;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2234 chr18 40381060 . G A 0 PASS DP=57;GPV=1;SPV=0.0059034;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,5:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2235 chr18 40765834 . C CA 0 PASS DP=39;GPV=1;SPV=0.023838;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2236 chr18 42154251 . C T 0 PASS DP=51;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,2:1,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2237 chr18 42357665 . C T 0 PASS DP=27;GPV=1;SPV=0.25826;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:4,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2238 chr18 43077102 . CAAA C 0 PASS DP=26;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2239 chr18 44744769 . T TA 0 PASS DP=52;GPV=1;SPV=0.0017575;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,14:6,6:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2240 chr18 45935610 . G GC 0 PASS DP=55;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,4:9,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2241 chr18 46112884 . GTA G 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2242 chr18 48149805 . C CT 0 PASS DP=39;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,10:1,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2243 chr18 48318214 . C CA 0 PASS DP=66;GPV=1;SPV=0.0002648;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:17,9:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2244 chr18 48514634 . G A 0 PASS DP=53;GPV=1;SPV=0.011726;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2245 chr18 48891502 . CAATAAAATAAAATAAAATAA C 0 PASS DP=33;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:5,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2246 chr18 49202916 . C T 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:2,1:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2247 chr18 49945762 . GA G 0 PASS DP=37;GPV=1;SPV=0.02545;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2248 chr18 50325085 . TCTCCTTCCTCCTCCTTCCTC T 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:1,2:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2249 chr18 50670756 . C CA 0 PASS DP=28;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:5,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2250 chr18 50689404 . TA T 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2251 chr18 50786538 . A ATTTT 0 PASS DP=29;GPV=1;SPV=0.20705;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2252 chr18 50956895 . G GA 0 PASS DP=43;GPV=1;SPV=0.035509;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,10:12,9:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2253 chr18 51508914 . C CAAA 0 PASS DP=37;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,8:10,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2254 chr18 51614342 . C T 0 PASS DP=60;GPV=1;SPV=0.0017532;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:10,3:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2255 chr18 52226373 . G T 0 PASS DP=52;GPV=1;SPV=0.031062;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:5,2:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2256 chr18 53393914 . C CCTCTCTCTCTCTCT 0 PASS DP=42;GPV=1;SPV=0.0025253;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,10:3,5:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2257 chr18 53546311 . C G 0 PASS DP=59;GPV=1;SPV=1.9941e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:7,5:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2258 chr18 56053026 . T A 0 PASS DP=57;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:3,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2259 chr18 57850556 . T G 0 PASS DP=45;GPV=1;SPV=0.080441;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:9,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2260 chr18 57899019 . TGA T 0 PASS DP=46;GPV=1;SPV=0.011302;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,2:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2261 chr18 58403774 . G C 0 PASS DP=61;GPV=1;SPV=3.1184e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:5,6:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2262 chr18 58629563 . T TCACACACACA 0 PASS DP=48;GPV=1;SPV=0.011312;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,6:3,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2263 chr18 58630618 . T C 0 PASS DP=64;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,7:9,1:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2264 chr18 58767872 . G A 0 PASS DP=49;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,4:8,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2265 chr18 58936654 . A AT 0 PASS DP=62;GPV=1;SPV=0.006961;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:13,6:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2266 chr18 58940923 . T TACACAC 0 PASS DP=35;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,8:8,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2267 chr18 60393218 . T TG 0 PASS DP=44;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:6,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2268 chr18 60405026 . G T 0 PASS DP=67;GPV=1;SPV=0.0090805;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:10,3:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2269 chr18 61924367 . C G 0 PASS DP=42;GPV=1;SPV=0.039556;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:6,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2270 chr18 61971234 . T G 0 PASS DP=30;GPV=1;SPV=0.024751;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2271 chr18 62063292 . G T 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2272 chr18 62502260 . GA G 0 PASS DP=25;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:4,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2273 chr18 62727227 . CA C 0 PASS DP=24;GPV=1;SPV=0.0087495;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:5,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2274 chr18 63431086 . TGC T 0 PASS DP=57;GPV=1;SPV=0.030521;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:15,4:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2275 chr18 63431089 . T A 0 PASS DP=62;GPV=1;SPV=0.044908;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:16,4:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2276 chr18 63431090 . C A 0 PASS DP=55;GPV=1;SPV=0.079987;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:14,4:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2277 chr18 63756804 . T TTG 0 PASS DP=44;GPV=1;SPV=0.0040786;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,17:4,9:2,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2278 chr18 66361535 . C T 0 PASS DP=36;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:13,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2279 chr18 67081282 . G A 0 PASS DP=65;GPV=1;SPV=0.00016784;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2280 chr18 67515903 . T C 0 PASS DP=46;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,2:2,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2281 chr18 68469761 . G GGAGAAGAGAAGAGAA 0 PASS DP=24;GPV=1;SPV=0.29371;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:6,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2282 chr18 69335023 . T A 0 PASS DP=67;GPV=1;SPV=0.00099736;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:14,10:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2283 chr18 70444986 . GTTTTT G 0 PASS DP=25;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:7,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2284 chr18 71000492 . C T 0 PASS DP=53;GPV=1;SPV=0.0048426;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:10,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2285 chr18 71399982 . G T 0 PASS DP=75;GPV=1;SPV=0.0011743;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:18,8:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2286 chr18 71568486 . A T 0 PASS DP=69;GPV=1;SPV=0.072331;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:19,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2287 chr18 72630564 . C CAGAGAGAGAGAGAGAGAGAGAG 0 PASS DP=39;GPV=1;SPV=0.090728;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:9,4:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2288 chr18 73093799 . A T 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:7,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2289 chr18 73206219 . G GACACAC 0 PASS DP=31;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,7:4,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2290 chr18 73912644 . A ATATATATATATATATACACATATG 0 PASS DP=39;GPV=1;SPV=0.15197;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,6:9,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2291 chr18 74843635 . C T 0 PASS DP=53;GPV=1;SPV=0.0025391;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,7:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2292 chr18 76611781 . C T 0 PASS DP=17;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:1,2:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2293 chr18 77690391 . GTCTC G 0 PASS DP=63;GPV=1;SPV=0.098889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:11,1:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2294 chr18 79016934 . G C 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2295 chr18 79356880 . A G 0 PASS DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2296 chr18 79610227 . C T 0 PASS DP=56;GPV=1;SPV=0.064666;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2297 chr18 79815441 . C CA 0 PASS DP=27;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:4,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2298 chr19 304172 . A ACAC 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2299 chr19 395904 . C T 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2300 chr19 411240 . C A 0 PASS DP=108;GPV=1;SPV=0.031091;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:18,4:25,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2301 chr19 650009 . G A 0 PASS DP=36;GPV=1;SPV=0.21475;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2302 chr19 744061 . G T 0 PASS DP=57;GPV=1;SPV=0.00010641;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:10,5:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2303 chr19 1194866 . CTTTTTTTTT C 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:3,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2304 chr19 1339033 . C CA 0 PASS DP=50;GPV=1;SPV=0.021468;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:18,9:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2305 chr19 1727735 . T TAAAAAAA 0 PASS DP=43;GPV=1;SPV=0.025265;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:6,6:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2306 chr19 1832914 . C CA 0 PASS DP=37;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2307 chr19 2817957 . A G 0 PASS DP=32;GPV=1;SPV=0.13077;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2308 chr19 2928844 . T C 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2309 chr19 3595078 . T TA 0 PASS DP=58;GPV=1;SPV=0.032243;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,10:10,8:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2310 chr19 3648530 . G A 0 PASS DP=62;GPV=1;SPV=0.13255;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,4:18,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2311 chr19 3885109 . T TAA 0 PASS DP=30;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2312 chr19 4104265 . T TA 0 PASS DP=38;GPV=1;SPV=0.013127;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:5,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2313 chr19 4899765 . A T 0 PASS DP=27;GPV=1;SPV=0.14757;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:3,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2314 chr19 5518924 . A AG 0 PASS DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:1,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2315 chr19 6082293 . CA C 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:5,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2316 chr19 7231304 . T G 0 PASS DP=56;GPV=1;SPV=0.034112;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:15,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2317 chr19 7772054 . C A 0 PASS DP=39;GPV=1;SPV=0.15773;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:9,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2318 chr19 7925704 . C A 0 PASS DP=86;GPV=1;SPV=5.5134e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:35,17:10,5:25,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2319 chr19 8781507 . G A 0 PASS DP=259;GPV=1;SPV=0.01982;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:127,23:36,8:91,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2320 chr19 8901307 . TAATAAAATAAAATAAAATAA T 0 PASS DP=43;GPV=1;SPV=0.020884;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2321 chr19 9058423 . C G 0 PASS DP=79;GPV=1;SPV=6.6761e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:13,6:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2322 chr19 9169265 . T TATATATATATA 0 PASS DP=27;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2323 chr19 10301479 . G GTT 0 PASS DP=24;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,7:1,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2324 chr19 10319259 . A G 0 PASS DP=69;GPV=1;SPV=6.2544e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:12,9:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2325 chr19 10676260 . GTTTGTTTTTTTTTTTTTT G 0 PASS DP=30;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2326 chr19 11293076 . AT A 0 PASS DP=24;GPV=1;SPV=0.002331;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,7:1,4:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2327 chr19 11414323 . TCATA T 0 PASS DP=27;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:6,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2328 chr19 13340426 . T A 0 PASS DP=47;GPV=1;SPV=0.0625;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,3:3,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2329 chr19 13486366 . G C 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2330 chr19 14080097 . T TATAATAATA 0 PASS DP=38;GPV=1;SPV=0.081016;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:11,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2331 chr19 14551950 . T C 0 PASS DP=31;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,4:0,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2332 chr19 14611371 . CT C 0 PASS DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2333 chr19 15228503 . ATTTTT A 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2334 chr19 15650835 . T TC 0 PASS DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2335 chr19 15812665 . CAGGA C 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2336 chr19 16063886 . G T 0 PASS DP=56;GPV=1;SPV=0.0030216;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:7,2:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2337 chr19 17147672 . AT A 0 PASS DP=27;GPV=1;SPV=0.016499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:1,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2338 chr19 17896824 . A ATT 0 PASS DP=30;GPV=1;SPV=0.01246;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:4,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2339 chr19 17967502 . C A 0 PASS DP=68;GPV=1;SPV=0.081098;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:22,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2340 chr19 18111530 . C CT 0 PASS DP=31;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,8:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2341 chr19 20397289 . A G 0 PASS DP=41;GPV=1;SPV=0.047956;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2342 chr19 20528117 . C T 0 PASS DP=68;GPV=1;SPV=0.0004496;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,8:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2343 chr19 21051790 . A G 0 PASS DP=75;GPV=1;SPV=0.00057029;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:11,3:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2344 chr19 23184370 . A T 0 PASS DP=60;GPV=1;SPV=0.00089447;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:13,5:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2345 chr19 23753601 . A G 0 PASS DP=64;GPV=1;SPV=0.011254;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:16,2:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2346 chr19 24369075 . AAC A 0 PASS DP=128;GPV=1;SPV=0.012591;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:45,15:24,8:21,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2347 chr19 24386451 . G T 0 PASS DP=133;GPV=1;SPV=0.024137;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:33,5:24,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2348 chr19 24441846 . C G 0 PASS DP=63;GPV=1;SPV=0.081913;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:13,3:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2349 chr19 25010777 . A T 0 PASS DP=25;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2350 chr19 26422867 . A G 0 PASS DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:17,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2351 chr19 26813246 . G C 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2352 chr19 27127720 . A T 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:26,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2353 chr19 27374600 . T A 0 PASS DP=186;GPV=1;SPV=0.043887;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:85,19:46,10:39,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2354 chr19 28625367 . C G 0 PASS DP=68;GPV=1;SPV=0.00078261;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:9,4:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2355 chr19 29434503 . G T 0 PASS DP=63;GPV=1;SPV=0.0014364;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:9,5:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2356 chr19 33095770 . GTCAAA G 0 PASS DP=50;GPV=1;SPV=0.0084701;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2357 chr19 33131273 . G T 0 PASS DP=40;GPV=1;SPV=0.019439;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2358 chr19 33133196 . T TAGAG 0 PASS DP=47;GPV=1;SPV=0.023235;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,8:9,6:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2359 chr19 33146482 . T C 0 PASS DP=36;GPV=1;SPV=0.021073;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:2,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2360 chr19 33887997 . C T 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:19,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2361 chr19 34314746 . G T 0 PASS DP=82;GPV=1;SPV=0.0046499;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:13,6:25,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2362 chr19 35226147 . TC T 0 PASS DP=67;GPV=1;SPV=0.006186;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:15,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2363 chr19 35359770 . T C 0 PASS DP=89;GPV=1;SPV=0.044605;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:41,14:14,3:27,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2364 chr19 35444428 . CT C 0 PASS DP=28;GPV=1;SPV=0.03285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2365 chr19 35983551 . G T 0 PASS DP=63;GPV=1;SPV=8.4921e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:7,8:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2366 chr19 36316392 . A AG 0 PASS DP=52;GPV=1;SPV=0.041513;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2367 chr19 36365959 . C CAA 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:10,3:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2368 chr19 37035408 . A C 0 PASS DP=59;GPV=1;SPV=0.075302;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:20,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2369 chr19 37214962 . T TA 0 PASS DP=33;GPV=1;SPV=0.008837;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:8,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2370 chr19 37268475 . C CT 0 PASS DP=64;GPV=1;SPV=0.02165;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,4:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2371 chr19 38116538 . A AAAAAG 0 PASS DP=32;GPV=1;SPV=0.0031609;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:4,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2372 chr19 38317561 . G GT 0 PASS DP=54;GPV=1;SPV=0.0035224;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,5:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2373 chr19 38351607 . C CA 0 PASS DP=36;GPV=1;SPV=0.0051998;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:2,8:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2374 chr19 38736467 . TTTGACCAAGCCCCAGGGCAGG T 0 PASS DP=35;GPV=1;SPV=0.058442;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2375 chr19 39893575 . G C 0 PASS DP=95;GPV=1;SPV=0.00090425;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:45,13:22,4:23,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2376 chr19 41365708 . T G 0 PASS DP=34;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,3:5,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2377 chr19 42309064 . C A 0 PASS DP=71;GPV=1;SPV=0.00030325;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:15,8:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2378 chr19 42326740 . T C 0 PASS DP=36;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,2:4,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2379 chr19 42826320 . A C 0 PASS DP=60;GPV=1;SPV=0.00068948;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:10,4:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2380 chr19 43057377 . G T 0 PASS DP=68;GPV=1;SPV=0.00015269;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:7,10:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2381 chr19 43516623 . C CTT 0 PASS DP=21;GPV=1;SPV=0.0048821;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,7:1,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2382 chr19 46060873 . C A 0 PASS DP=64;GPV=1;SPV=0.00011238;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,5:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2383 chr19 46846442 . T G 0 PASS DP=43;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:6,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2384 chr19 47816529 . A AT 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2385 chr19 47884804 . C CT 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2386 chr19 47921144 . T C 0 PASS DP=57;GPV=1;SPV=0.037062;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,2:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2387 chr19 47924231 . G C 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:0,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2388 chr19 48101126 . A T 0 PASS DP=24;GPV=1;SPV=0.092308;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:3,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2389 chr19 49025212 . T C 0 PASS DP=58;GPV=1;SPV=0.037233;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:18,3:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2390 chr19 49318868 . A ATTT 0 PASS DP=35;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2391 chr19 49758152 . C T 0 PASS DP=55;GPV=1;SPV=0.0089139;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:14,8:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2392 chr19 50136384 . G T 0 PASS DP=377;GPV=1;SPV=0.049534;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:211:186,24:99,15:87,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2393 chr19 50170961 . CA C 0 PASS DP=50;GPV=1;SPV=0.016084;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:19,9:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2394 chr19 50623613 . CAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=34;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,10:7,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2395 chr19 50993513 . CAAA C 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2396 chr19 51090116 . C G 0 PASS DP=74;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:13,5:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2397 chr19 51120845 . C CT 0 PASS DP=38;GPV=1;SPV=0.04669;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:15,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2398 chr19 53060604 . C T 0 PASS DP=71;GPV=1;SPV=9.3193e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:14,5:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2399 chr19 53914273 . C CAAAAAAA 0 PASS DP=42;GPV=1;SPV=0.056718;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:16,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2400 chr19 54914841 . G C 0 PASS DP=58;GPV=1;SPV=0.0005758;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:13,7:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2401 chr19 55082948 . A T 0 PASS DP=56;GPV=1;SPV=0.011603;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:15,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2402 chr19 57179200 . TTC T 0 PASS DP=53;GPV=1;SPV=0.039973;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:10,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2403 chr19 58171286 . C T 0 PASS DP=36;GPV=1;SPV=0.027191;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:7,1:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2404 chr19 58349648 . C CA 0 PASS DP=33;GPV=1;SPV=0.0077494;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2405 chr19 58405212 . C T 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:3,1:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2406 chr19 58427348 . TC T 0 PASS DP=33;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,4:0,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2407 chr2 686134 . A G 0 PASS DP=55;GPV=1;SPV=4.6765e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,6:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2408 chr2 823560 . T G 0 PASS DP=55;GPV=1;SPV=0.00011829;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:4,5:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2409 chr2 868396 . C A 0 PASS DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:1,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2410 chr2 2773501 . A C 0 PASS DP=60;GPV=1;SPV=0.00024707;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,7:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2411 chr2 3510143 . CA C 0 PASS DP=33;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,9:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2412 chr2 3530344 . T TGG 0 PASS DP=22;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:0,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2413 chr2 3892603 . C T 0 PASS DP=64;GPV=1;SPV=0.00082439;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:12,7:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2414 chr2 3923534 . T G 0 PASS DP=48;GPV=1;SPV=0.00053926;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:10,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2415 chr2 4622211 . G T 0 PASS DP=79;GPV=1;SPV=0.00044128;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:14,5:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2416 chr2 4871563 . A G 0 PASS DP=63;GPV=1;SPV=0.0002055;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:9,5:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2417 chr2 5573348 . AAAT A 0 PASS DP=33;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,4:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2418 chr2 6016362 . T C 0 PASS DP=42;GPV=1;SPV=0.094071;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,5:9,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2419 chr2 6217503 . G A 0 PASS DP=68;GPV=1;SPV=0.0029154;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:15,3:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2420 chr2 6504952 . C T 0 PASS DP=23;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2421 chr2 7085270 . C CTTTTT 0 PASS DP=36;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2422 chr2 7315365 . G A 0 PASS DP=60;GPV=1;SPV=0.095104;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2423 chr2 9079486 . C T 0 PASS DP=60;GPV=1;SPV=0.00083483;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:11,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2424 chr2 9514674 . C A 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2425 chr2 9721949 . T G 0 PASS DP=56;GPV=1;SPV=0.002188;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:11,3:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2426 chr2 10007354 . T TTACTATTATTATTACTACTAC 0 PASS DP=43;GPV=1;SPV=0.018762;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:6,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2427 chr2 10206245 . C CA 0 PASS DP=36;GPV=1;SPV=0.01286;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,9:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2428 chr2 10942692 . A G 0 PASS DP=66;GPV=1;SPV=0.00012491;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:9,6:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2429 chr2 11419508 . A AAAAC 0 PASS DP=36;GPV=1;SPV=0.0044617;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,14:6,9:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2430 chr2 12123234 . TC T 0 PASS DP=80;GPV=1;SPV=0.057784;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,3:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2431 chr2 12369609 . C A 0 PASS DP=53;GPV=1;SPV=0.00068121;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,6:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2432 chr2 14716789 . C T 0 PASS DP=69;GPV=1;SPV=0.0048249;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:12,3:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2433 chr2 15723517 . T G 0 PASS DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2434 chr2 16279194 . C T 0 PASS DP=57;GPV=1;SPV=0.10105;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:16,5:5,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2435 chr2 17353616 . C A 0 PASS DP=71;GPV=1;SPV=6.5042e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:12,9:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2436 chr2 17839195 . TA T 0 PASS DP=29;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2437 chr2 19144887 . CA C 0 PASS DP=41;GPV=1;SPV=0.0062663;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,14:9,10:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2438 chr2 22050337 . A C 0 PASS DP=74;GPV=1;SPV=0.012493;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:4,4:30,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2439 chr2 22659875 . GCT G 0 PASS DP=35;GPV=1;SPV=0.020734;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,14:1,7:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2440 chr2 23120687 . GCGCA G 0 PASS DP=52;GPV=1;SPV=0.0047709;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,13:11,9:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2441 chr2 23714239 . CT C 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:3,7:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2442 chr2 23899918 . CTT C 0 PASS DP=30;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:4,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2443 chr2 23942967 . C CT 0 PASS DP=33;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2444 chr2 24912585 . GCA G 0 PASS DP=48;GPV=1;SPV=0.065801;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,4:8,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2445 chr2 25224723 . TTATTA T 0 PASS DP=43;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,13:1,8:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2446 chr2 25625551 . ATT A 0 PASS DP=29;GPV=1;SPV=0.29515;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:8,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2447 chr2 25728041 . A ATG 0 PASS DP=44;GPV=1;SPV=0.025825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:10,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2448 chr2 26995780 . G GGTGTGTGTGT 0 PASS DP=44;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,9:9,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2449 chr2 27691592 . C CTT 0 PASS DP=41;GPV=1;SPV=0.0069071;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:4,7:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2450 chr2 28461572 . C CAAAATAAAATAAATAAAAT 0 PASS DP=38;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:5,3:7,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2451 chr2 29717171 . C CAAAA 0 PASS DP=28;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:4,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2452 chr2 30681899 . C CT 0 PASS DP=31;GPV=1;SPV=0.17647;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:5,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2453 chr2 32001032 . A AT 0 PASS DP=33;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2454 chr2 32930451 . A G 0 PASS DP=78;GPV=1;SPV=0.031062;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,5:14,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2455 chr2 33476728 . C CCT 0 PASS DP=35;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,9:4,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2456 chr2 35007269 . CA C 0 PASS DP=41;GPV=1;SPV=0.028792;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:4,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2457 chr2 36506181 . TCACA T 0 PASS DP=38;GPV=1;SPV=0.12093;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,5:9,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2458 chr2 37968438 . C CA 0 PASS DP=30;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:4,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2459 chr2 38164595 . C CACATATATATATATAT 0 PASS DP=31;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2460 chr2 38253252 . G GT 0 PASS DP=53;GPV=1;SPV=0.0025391;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,4:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2461 chr2 38392479 . C CCAG 0 PASS DP=22;GPV=1;SPV=0.011868;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,10:4,9:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2462 chr2 39010899 . T C 0 PASS DP=47;GPV=1;SPV=0.021442;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2463 chr2 39045273 . A AGTGTGT 0 PASS DP=32;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,4:8,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2464 chr2 39648042 . G GTTTT 0 PASS DP=36;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:9,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2465 chr2 42018932 . AAAAAGAAAAG A 0 PASS DP=36;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,8:2,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2466 chr2 42060586 . G A 0 PASS DP=57;GPV=1;SPV=0.030521;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:10,2:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2467 chr2 42060587 . T A 0 PASS DP=39;GPV=1;SPV=0.092279;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2468 chr2 42409722 . AAAAAAAAT A 0 PASS DP=30;GPV=1;SPV=0.043423;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2469 chr2 43046823 . ATCTCTCTCTC A 0 PASS DP=28;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2470 chr2 43297376 . T C 0 PASS DP=17;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2471 chr2 43455520 . A T 0 PASS DP=59;GPV=1;SPV=0.031253;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,7:13,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2472 chr2 44457350 . A C 0 PASS DP=69;GPV=1;SPV=0.00026731;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:15,10:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2473 chr2 45611225 . G A 0 PASS DP=76;GPV=1;SPV=4.6208e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:12,13:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2474 chr2 46855243 . TCACACACACACA T 0 PASS DP=30;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,7:2,1:1,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2475 chr2 48834300 . G A 0 PASS DP=51;GPV=1;SPV=0.047515;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2476 chr2 49257453 . C CTTTT 0 PASS DP=34;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:10,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2477 chr2 50352778 . T A 0 PASS DP=38;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:6,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2478 chr2 51504651 . TGC T 0 PASS DP=27;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,4:2,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2479 chr2 51778275 . CA C 0 PASS DP=36;GPV=1;SPV=0.00095347;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,7:3,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2480 chr2 51983544 . C G 0 PASS DP=56;GPV=1;SPV=0.011603;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:8,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2481 chr2 52334968 . A C 0 PASS DP=63;GPV=1;SPV=0.00031271;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:14,3:9,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2482 chr2 52449055 . G GTAGTAATAATAATAATAATAA 0 PASS DP=35;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2483 chr2 52852312 . T TG 0 PASS DP=58;GPV=1;SPV=0.0035088;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,11:8,9:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2484 chr2 54237533 . G A 0 PASS DP=69;GPV=1;SPV=0.00069999;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:14,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2485 chr2 54513707 . T G 0 PASS DP=62;GPV=1;SPV=0.00086088;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:14,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2486 chr2 55728945 . C G 0 PASS DP=65;GPV=1;SPV=2.728e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,6:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2487 chr2 56430889 . T G 0 PASS DP=63;GPV=1;SPV=0.00020585;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:14,6:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2488 chr2 56450099 . G GTT 0 PASS DP=23;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:8,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2489 chr2 57116261 . G A 0 PASS DP=64;GPV=1;SPV=0.0045171;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:14,7:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2490 chr2 57569891 . C A 0 PASS DP=77;GPV=1;SPV=0.001022;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,5:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2491 chr2 59467199 . GTTCATGGCATC G 0 PASS DP=50;GPV=1;SPV=0.00092621;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,6:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2492 chr2 59755611 . C CT 0 PASS DP=44;GPV=1;SPV=0.001853;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:8,7:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2493 chr2 59892090 . T A 0 PASS DP=63;GPV=1;SPV=0.00046907;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:10,8:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2494 chr2 60901148 . CT C 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2495 chr2 60901151 . T C 0 PASS DP=24;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,3:6,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2496 chr2 61572716 . CT C 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:5,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2497 chr2 62357869 . C CA 0 PASS DP=37;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:9,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2498 chr2 65218878 . CA C 0 PASS DP=25;GPV=1;SPV=0.017225;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2499 chr2 66341454 . T A 0 PASS DP=44;GPV=1;SPV=0.093185;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2500 chr2 66794702 . T A 0 PASS DP=47;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,4:8,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2501 chr2 68170747 . C CA 0 PASS DP=45;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,6:10,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2502 chr2 68760882 . T A 0 PASS DP=59;GPV=1;SPV=0.26383;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,5:9,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2503 chr2 69027621 . A AGTGTGTGTGTGT 0 PASS DP=34;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:9,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2504 chr2 69639050 . T A 0 PASS DP=56;GPV=1;SPV=0.0036826;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,6:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2505 chr2 70293546 . C G 0 PASS DP=77;GPV=1;SPV=6.2443e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:13,6:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2506 chr2 70637928 . A AAAAATAAAAT 0 PASS DP=38;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:4,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2507 chr2 71097711 . C T 0 PASS DP=36;GPV=1;SPV=0.18447;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,6:6,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2508 chr2 71521673 . T A 0 PASS DP=72;GPV=1;SPV=7.7661e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:13,8:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2509 chr2 71618566 . GTT G 0 PASS DP=45;GPV=1;SPV=0.16209;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:15,1:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2510 chr2 72144081 . C G 0 PASS DP=100;GPV=1;SPV=0.0019761;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:24,5:24,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2511 chr2 74135948 . C CT 0 PASS DP=32;GPV=1;SPV=0.0058007;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,9:2,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2512 chr2 75813568 . C CT 0 PASS DP=61;GPV=1;SPV=0.088868;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2513 chr2 76443314 . C CTT 0 PASS DP=30;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,10:1,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2514 chr2 77648462 . T G 0 PASS DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:3,8:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2515 chr2 78093492 . A AT 0 PASS DP=52;GPV=1;SPV=0.0082887;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:9,7:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2516 chr2 78710692 . A AAAGGAAGG 0 PASS DP=39;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,5:4,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2517 chr2 79056095 . CA C 0 PASS DP=41;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,3:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2518 chr2 79521107 . GATATATATATATATATATATATATATATATAT G 0 PASS DP=27;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:4,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2519 chr2 82053878 . A G 0 PASS DP=45;GPV=1;SPV=0.0040548;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:3,8:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2520 chr2 82182734 . TC T 0 PASS DP=37;GPV=1;SPV=0.042901;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2521 chr2 82182736 . C G 0 PASS DP=38;GPV=1;SPV=0.03771;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2522 chr2 82182739 . ACTCTC A 0 PASS DP=39;GPV=1;SPV=0.045519;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2523 chr2 82441284 . C T 0 PASS DP=57;GPV=1;SPV=0.0037091;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2524 chr2 82784939 . G A 0 PASS DP=53;GPV=1;SPV=0.033516;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:10,2:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2525 chr2 85328781 . A T 0 PASS DP=61;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:36:1,4:0,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2526 chr2 86303212 . GT G 0 PASS DP=35;GPV=1;SPV=0.030556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:5,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2527 chr2 86905522 . G T 0 PASS DP=60;GPV=1;SPV=0.038493;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:15,11:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2528 chr2 87018492 . C A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2529 chr2 87214518 . G T 0 PASS DP=93;GPV=1;SPV=0.0037978;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,16:13,9:19,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2530 chr2 87222922 . GGT G 0 PASS DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:14,2:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2531 chr2 87236895 . CA C 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2532 chr2 87429621 . C A 0 PASS DP=56;GPV=1;SPV=0.064666;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2533 chr2 87429622 . A G 0 PASS DP=53;GPV=1;SPV=0.059209;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:14,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2534 chr2 87430689 . AAGCC A 0 PASS DP=161;GPV=1;SPV=0.02276;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:68,15:34,5:34,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2535 chr2 88983107 . A G 0 PASS DP=89;GPV=1;SPV=0.018478;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:22,3:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2536 chr2 89592132 . C T 0 PASS DP=53;GPV=1;SPV=0.00069917;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:1,3:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2537 chr2 89617384 . AAT A 0 PASS DP=76;GPV=1;SPV=0.029803;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:11,7:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2538 chr2 89836731 . T A 0 PASS DP=73;GPV=1;SPV=0.0094399;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:21,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2539 chr2 89909729 . C T 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:8,8:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2540 chr2 89919282 . C T 0 PASS DP=41;GPV=1;SPV=0.20218;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2541 chr2 90294162 . G A 0 PASS DP=77;GPV=1;SPV=0.043004;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:18,5:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2542 chr2 90312003 . G A 0 PASS DP=75;GPV=1;SPV=0.002038;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:7,4:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2543 chr2 90321917 . T C 0 PASS DP=78;GPV=1;SPV=0.046456;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:19,1:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2544 chr2 90332248 . TTA T 0 PASS DP=31;GPV=1;SPV=0.057842;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2545 chr2 90356850 . A ATT 0 PASS DP=137;GPV=1;SPV=0.045905;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:28,6:28,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2546 chr2 90382966 . A G 0 PASS DP=217;GPV=1;SPV=0.040517;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:102,17:11,2:91,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2547 chr2 90401914 . T A 0 PASS DP=267;GPV=1;SPV=0.028609;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:142,17:61,10:81,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2548 chr2 91426791 . A G 0 PASS DP=417;GPV=1;SPV=0.027406;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:196,31:125,20:71,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2549 chr2 91442435 . C A 0 PASS DP=127;GPV=1;SPV=0.024717;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:48,15:21,5:27,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2550 chr2 91458943 . C G 0 PASS DP=66;GPV=1;SPV=0.0053553;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:23,9:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2551 chr2 91496251 . C CAAAAA 0 PASS DP=116;GPV=1;SPV=0.038126;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:51,8:28,7:23,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2552 chr2 91516287 . C A 0 PASS DP=44;GPV=1;SPV=0.074336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:13,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2553 chr2 91519296 . G A 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2554 chr2 91542845 . C CGT 0 PASS DP=71;GPV=1;SPV=0.032792;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,12:16,7:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2555 chr2 91545052 . G A 0 PASS DP=46;GPV=1;SPV=0.0050385;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,8:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2556 chr2 91551347 . A C 0 PASS DP=137;GPV=1;SPV=0.0093814;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:70,8:32,4:38,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2557 chr2 91675456 . A G 0 PASS DP=61;GPV=1;SPV=0.032567;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:8,5:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2558 chr2 92132618 . A G 0 PASS DP=56;GPV=1;SPV=0.14256;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:19,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2559 chr2 92249636 . A C 0 PASS DP=62;GPV=1;SPV=0.10559;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:6,3:26,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2560 chr2 92254569 . G C 0 PASS DP=121;GPV=1;SPV=0.011495;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:57,10:28,5:29,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2561 chr2 92261556 . T A 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2562 chr2 92276085 . T G 0 PASS DP=209;GPV=1;SPV=0.027257;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:94,17:33,8:61,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2563 chr2 92309923 . A G 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2564 chr2 92309928 . T A 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2565 chr2 92383293 . A G 0 PASS DP=71;GPV=1;SPV=0.019781;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:22,8:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2566 chr2 92499753 . T G 0 PASS DP=139;GPV=1;SPV=0.027282;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:74,10:54,7:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2567 chr2 92533519 . G T 0 PASS DP=55;GPV=1;SPV=0.11998;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:21,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2568 chr2 92556579 . A T 0 PASS DP=268;GPV=1;SPV=0.0026044;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:133,25:101,20:32,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2569 chr2 92728437 . A G 0 PASS DP=47;GPV=1;SPV=0.20161;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:2,0:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2570 chr2 92759321 . C G 0 PASS DP=24;GPV=1;SPV=0.17984;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:5,1:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2571 chr2 92774895 . C A 0 PASS DP=129;GPV=1;SPV=0.035957;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:59,7:8,2:51,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2572 chr2 92839048 . T A 0 PASS DP=171;GPV=1;SPV=0.032518;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:77,13:38,2:39,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2573 chr2 92839081 . G A 0 PASS DP=182;GPV=1;SPV=0.041615;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:78,19:24,6:54,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2574 chr2 92889972 . CAT C 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2575 chr2 93001964 . C T 0 PASS DP=73;GPV=1;SPV=0.025228;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:18,6:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2576 chr2 93009752 . C T 0 PASS DP=85;GPV=1;SPV=0.074238;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:41,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2577 chr2 93039692 . T G 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:18,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2578 chr2 93040550 . C G 0 PASS DP=99;GPV=1;SPV=0.029623;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:20,1:25,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2579 chr2 93042746 . G T 0 PASS DP=24;GPV=1;SPV=0.13043;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2580 chr2 93087515 . T C 0 PASS DP=70;GPV=1;SPV=0.11326;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:16,4:25,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2581 chr2 93096128 . T A 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:21,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2582 chr2 93097106 . C G 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2583 chr2 93100515 . T G 0 PASS DP=158;GPV=1;SPV=0.035602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:75,12:51,7:24,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2584 chr2 93151427 . T A 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:1,0:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2585 chr2 93255109 . G T 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:0,0:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2586 chr2 93265760 . A C 0 PASS DP=182;GPV=1;SPV=0.020561;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:88,11:82,9:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2587 chr2 93316463 . G C 0 PASS DP=19;GPV=1;SPV=0.17028;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:8,3:8,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2588 chr2 93332537 . A G 0 PASS DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2589 chr2 93473588 . C G 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:22,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2590 chr2 93628626 . A C 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2591 chr2 93641763 . G A 0 PASS DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2592 chr2 93694069 . G A 0 PASS DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2593 chr2 93821099 . A G 0 PASS DP=41;GPV=1;SPV=0.027524;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:13,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2594 chr2 93961018 . T A 0 PASS DP=41;GPV=1;SPV=0.044901;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:4,1:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2595 chr2 93972780 . T G 0 PASS DP=75;GPV=1;SPV=0.048464;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:11,2:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2596 chr2 94084851 . A C 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2597 chr2 94087228 . G A 0 PASS DP=81;GPV=1;SPV=0.0071633;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:20,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2598 chr2 94156216 . A AG 0 PASS DP=32;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:8,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2599 chr2 94156217 . A T 0 PASS DP=31;GPV=1;SPV=0.025213;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2600 chr2 94156218 . A T 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2601 chr2 94995255 . G T 0 PASS DP=46;GPV=1;SPV=0.19632;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,3:17,1:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2602 chr2 94995261 . GC G 0 PASS DP=55;GPV=1;SPV=0.096964;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,5:18,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2603 chr2 94995266 . G GC 0 PASS DP=59;GPV=1;SPV=0.06862;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,7:15,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2604 chr2 95543732 . T G 0 PASS DP=68;GPV=1;SPV=0.010404;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:21,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2605 chr2 96060658 . T C 0 PASS DP=122;GPV=1;SPV=0.016173;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:52,19:24,15:28,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2606 chr2 96805418 . G GT 0 PASS DP=29;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:9,7:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2607 chr2 97012153 . A AAAATAAAT 0 PASS DP=55;GPV=1;SPV=0.031844;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,8:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2608 chr2 97588780 . A G 0 PASS DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2609 chr2 97665723 . CTCTCTCTCTCTCTCTATA C 0 PASS DP=35;GPV=1;SPV=0.17028;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,8:2,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2610 chr2 97979503 . A G 0 PASS DP=46;GPV=1;SPV=0.015826;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:12,5:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2611 chr2 101712903 . CT C 0 PASS DP=30;GPV=1;SPV=0.019985;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2612 chr2 106289319 . G T 0 PASS DP=65;GPV=1;SPV=0.06044;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:20,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2613 chr2 107433356 . A G 0 PASS DP=50;GPV=1;SPV=0.083772;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,8:9,4:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2614 chr2 108098643 . A T 0 PASS DP=48;GPV=1;SPV=0.026352;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,3:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2615 chr2 108360003 . A G 0 PASS DP=32;GPV=1;SPV=0.0094843;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:1,4:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2616 chr2 108452847 . C A 0 PASS DP=56;GPV=1;SPV=0.074614;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:17,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2617 chr2 108500159 . T C 0 PASS DP=60;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:30:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2618 chr2 109185314 . T G 0 PASS DP=56;GPV=1;SPV=0.0030216;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:12,2:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2619 chr2 111351928 . A AT 0 PASS DP=59;GPV=1;SPV=0.036735;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,9:11,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2620 chr2 111639504 . T C 0 PASS DP=64;GPV=1;SPV=0.075514;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:12,2:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2621 chr2 112167884 . TG T 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2622 chr2 112388323 . A C 0 PASS DP=38;GPV=1;SPV=0.10585;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2623 chr2 113520484 . A C 0 PASS DP=59;GPV=1;SPV=0.075302;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:18,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2624 chr2 113562784 . T C 0 PASS DP=86;GPV=1;SPV=0.017729;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:22,2:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2625 chr2 113587861 . TCTGCCCTCACTGTGCAATTCCAGGAGTGTTTTTCCTTC T 0 PASS DP=126;GPV=1;SPV=0.042403;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:59,12:37,3:22,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2626 chr2 113597419 . G A 0 PASS DP=65;GPV=1;SPV=0.054436;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:23,4:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2627 chr2 113693857 . CTTT C 0 PASS DP=32;GPV=1;SPV=0.0083313;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:7,7:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2628 chr2 116864344 . T A 0 PASS DP=40;GPV=1;SPV=0.01315;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2629 chr2 116873420 . CTGT C 0 PASS DP=49;GPV=1;SPV=0.0027601;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:7,7:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2630 chr2 117652617 . T G 0 PASS DP=30;GPV=1;SPV=0.013487;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2631 chr2 117652670 . A AAG 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2632 chr2 118620788 . C T 0 PASS DP=54;GPV=1;SPV=0.01064;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2633 chr2 119360512 . C T 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2634 chr2 120680498 . C G 0 PASS DP=18;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2635 chr2 121799626 . G C 0 PASS DP=63;GPV=1;SPV=0.019794;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2636 chr2 122793789 . T A 0 PASS DP=51;GPV=1;SPV=0.1439;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2637 chr2 123567325 . C CAAAAAA 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2638 chr2 124296151 . G A 0 PASS DP=59;GPV=1;SPV=0.00047821;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:16,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2639 chr2 124317198 . A G 0 PASS DP=52;GPV=1;SPV=0.0047364;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:9,3:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2640 chr2 125499797 . CT C 0 PASS DP=39;GPV=1;SPV=0.0060611;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,11:5,8:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2641 chr2 125798730 . A T 0 PASS DP=67;GPV=1;SPV=0.0024512;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:24,9:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2642 chr2 125854365 . G C 0 PASS DP=68;GPV=1;SPV=0.001166;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:12,4:18,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2643 chr2 125891353 . GTA G 0 PASS DP=20;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:3,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2644 chr2 125988641 . A AT 0 PASS DP=60;GPV=1;SPV=0.0035375;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2645 chr2 127221243 . ATTTTT A 0 PASS DP=28;GPV=1;SPV=0.010374;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:4,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2646 chr2 127711424 . C CA 0 PASS DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2647 chr2 128079612 . T G 0 PASS DP=24;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,3:4,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2648 chr2 128677264 . C A 0 PASS DP=67;GPV=1;SPV=0.022564;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:8,9:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2649 chr2 128677265 . A C 0 PASS DP=72;GPV=1;SPV=0.010895;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:8,9:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2650 chr2 129973563 . C T 0 PASS DP=57;GPV=1;SPV=0.009946;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:10,4:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2651 chr2 130110807 . A T 0 PASS DP=35;GPV=1;SPV=0.021839;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2652 chr2 130124424 . A G 0 PASS DP=47;GPV=1;SPV=0.026369;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:7,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2653 chr2 130197270 . A G 0 PASS DP=48;GPV=1;SPV=0.037457;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,1:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2654 chr2 130607976 . G A 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:0,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2655 chr2 130622941 . T G 0 PASS DP=50;GPV=1;SPV=0.011854;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:8,5:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2656 chr2 130623738 . A G 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2657 chr2 130648059 . A G 0 PASS DP=87;GPV=1;SPV=0.010368;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:27,4:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2658 chr2 130781815 . CA C 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2659 chr2 130926008 . T TTTTCTTTC 0 PASS DP=31;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:4,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2660 chr2 131040025 . A C 0 PASS DP=81;GPV=1;SPV=0.042386;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:19,4:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2661 chr2 131264373 . G A 0 PASS DP=63;GPV=1;SPV=0.010286;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:5,2:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2662 chr2 131602701 . A T 0 PASS DP=64;GPV=1;SPV=0.20119;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:21,1:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2663 chr2 132591278 . C A 0 PASS DP=29;GPV=1;SPV=0.067079;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,7:1,1:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2664 chr2 132886169 . TA T 0 PASS DP=53;GPV=1;SPV=0.00055994;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:16,22:9,14:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2665 chr2 133444399 . G GAT 0 PASS DP=42;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,7:3,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2666 chr2 133839416 . T TA 0 PASS DP=49;GPV=1;SPV=0.0044;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,10:5,7:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2667 chr2 136566790 . G A 0 PASS DP=65;GPV=1;SPV=3.8037e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,5:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2668 chr2 136709397 . C A 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2669 chr2 137404476 . C T 0 PASS DP=18;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:3,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2670 chr2 137729042 . G T 0 PASS DP=58;GPV=1;SPV=0.033228;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:16,1:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2671 chr2 138089369 . C A 0 PASS DP=63;GPV=1;SPV=0.00040347;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:8,9:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2672 chr2 140112660 . G GAGAA 0 PASS DP=42;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,10:11,6:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2673 chr2 140696743 . C A 0 PASS DP=83;GPV=1;SPV=8.9862e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:18,4:15,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2674 chr2 142086635 . AC A 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2675 chr2 142797765 . CA C 0 PASS DP=36;GPV=1;SPV=0.024846;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:8,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2676 chr2 145635002 . C CTT 0 PASS DP=22;GPV=1;SPV=0.20979;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2677 chr2 145687047 . A AT 0 PASS DP=62;GPV=1;SPV=0.0016822;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:11,5:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2678 chr2 146937086 . AATGGATGGATGG A 0 PASS DP=32;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2679 chr2 147673537 . C CT 0 PASS DP=38;GPV=1;SPV=0.032095;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:13,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2680 chr2 148176304 . GT G 0 PASS DP=38;GPV=1;SPV=0.11076;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:14,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2681 chr2 148270393 . A ATT 0 PASS DP=49;GPV=1;SPV=0.022676;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:14,8:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2682 chr2 149156621 . G A 0 PASS DP=50;GPV=1;SPV=0.001804;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:9,9:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2683 chr2 149674983 . CTA C 0 PASS DP=55;GPV=1;SPV=0.055991;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:15,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2684 chr2 149675019 . CTA C 0 PASS DP=50;GPV=1;SPV=0.0083039;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:13,6:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2685 chr2 149705978 . A G 0 PASS DP=31;GPV=1;SPV=0.17217;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:4,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2686 chr2 150658979 . CT C 0 PASS DP=30;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,9:3,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2687 chr2 153246512 . C T 0 PASS DP=65;GPV=1;SPV=0.0022088;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,6:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2688 chr2 153719837 . G T 0 PASS DP=86;GPV=1;SPV=1.6328e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:20,12:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2689 chr2 154620975 . TCCTTTCTC T 0 PASS DP=44;GPV=1;SPV=0.10935;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:3,2:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2690 chr2 155334085 . A G 0 PASS DP=38;GPV=1;SPV=0.042555;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:11,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2691 chr2 155334086 . AG A 0 PASS DP=36;GPV=1;SPV=0.016761;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,6:9,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2692 chr2 155671369 . GA G 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2693 chr2 158216386 . CTTTTTT C 0 PASS DP=25;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:3,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2694 chr2 158750164 . AGT A 0 PASS DP=41;GPV=1;SPV=0.0079095;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,11:4,7:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2695 chr2 159874069 . TAA T 0 PASS DP=57;GPV=1;SPV=0.1174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2696 chr2 159874084 . G GTA 0 PASS DP=52;GPV=1;SPV=0.023496;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:8,5:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2697 chr2 160191662 . A T 0 PASS DP=64;GPV=1;SPV=0.030011;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:17,5:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2698 chr2 160681459 . C CTGTGTGTGTGTG 0 PASS DP=21;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:2,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2699 chr2 161109807 . G A 0 PASS DP=71;GPV=1;SPV=0.029557;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:20,5:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2700 chr2 162820033 . CT C 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2701 chr2 163102493 . CA C 0 PASS DP=37;GPV=1;SPV=0.011899;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,8:4,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2702 chr2 163758054 . C A 0 PASS DP=67;GPV=1;SPV=3.7651e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:8,8:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2703 chr2 165147294 . GGT G 0 PASS DP=43;GPV=1;SPV=0.021659;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:10,9:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2704 chr2 166154444 . G C 0 PASS DP=50;GPV=1;SPV=0.031046;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2705 chr2 168752279 . A ATGTGTGTG 0 PASS DP=24;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:3,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2706 chr2 169656413 . A G 0 PASS DP=46;GPV=1;SPV=0.16794;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2707 chr2 169838387 . TTG T 0 PASS DP=44;GPV=1;SPV=0.011312;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,6:2,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2708 chr2 170160245 . C CTT 0 PASS DP=41;GPV=1;SPV=0.045738;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:6,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2709 chr2 170866189 . A C 0 PASS DP=68;GPV=1;SPV=0.0040937;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:19,2:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2710 chr2 170921192 . GTT G 0 PASS DP=36;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:4,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2711 chr2 171272618 . AT A 0 PASS DP=30;GPV=1;SPV=0.049667;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:6,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2712 chr2 172709045 . TC T 0 PASS DP=66;GPV=1;SPV=0.042184;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:16,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2713 chr2 172911758 . CTT C 0 PASS DP=28;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,7:7,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2714 chr2 173939765 . A C 0 PASS DP=37;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,2:4,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2715 chr2 174347609 . CTT C 0 PASS DP=32;GPV=1;SPV=0.21107;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:14,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2716 chr2 174409249 . G A 0 PASS DP=39;GPV=1;SPV=0.058443;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2717 chr2 175000137 . AT A 0 PASS DP=48;GPV=1;SPV=0.0055138;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,6:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2718 chr2 175777946 . C T 0 PASS DP=68;GPV=1;SPV=0.00025893;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:9,4:17,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2719 chr2 177044292 . GACACAC G 0 PASS DP=55;GPV=1;SPV=0.0086042;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:13,7:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2720 chr2 177414897 . C CGTGTGTGTGTGTGT 0 PASS DP=40;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:9,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2721 chr2 177453190 . C T 0 PASS DP=47;GPV=1;SPV=9.674e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:8,8:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2722 chr2 178016408 . C A 0 PASS DP=63;GPV=1;SPV=0.046186;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:12,3:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2723 chr2 179332330 . AAAAAGG A 0 PASS DP=55;GPV=1;SPV=0.060034;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2724 chr2 179395127 . A T 0 PASS DP=48;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:12,3:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2725 chr2 179427024 . A T 0 PASS DP=66;GPV=1;SPV=4.5381e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:11,5:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2726 chr2 181301902 . T A 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2727 chr2 181301903 . G T 0 PASS DP=55;GPV=1;SPV=0.11998;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:11,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2728 chr2 182169922 . G A 0 PASS DP=42;GPV=1;SPV=0.0066141;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,6:2,4:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2729 chr2 182437546 . A T 0 PASS DP=66;GPV=1;SPV=0.0057252;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:14,5:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2730 chr2 183278919 . T C 0 PASS DP=59;GPV=1;SPV=0.00031881;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:6,4:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2731 chr2 184271914 . C T 0 PASS DP=78;GPV=1;SPV=1.7586e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:17,8:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2732 chr2 185865597 . A C 0 PASS DP=73;GPV=1;SPV=0.033768;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:21,2:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2733 chr2 185933382 . CAATA C 0 PASS DP=50;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,7:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2734 chr2 186007102 . T TTCTCTCTC 0 PASS DP=47;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:12,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2735 chr2 186213505 . TACAC T 0 PASS DP=34;GPV=1;SPV=0.020174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:10,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2736 chr2 186961457 . CTT C 0 PASS DP=23;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,8:3,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2737 chr2 187944437 . CTTT C 0 PASS DP=34;GPV=1;SPV=0.0089783;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,11:1,7:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2738 chr2 188424486 . T C 0 PASS DP=64;GPV=1;SPV=0.0031368;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:10,7:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2739 chr2 188466445 . T A 0 PASS DP=47;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,2:5,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2740 chr2 188773787 . T A 0 PASS DP=56;GPV=1;SPV=0.072845;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2741 chr2 189019131 . T A 0 PASS DP=62;GPV=1;SPV=0.00021002;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:11,8:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2742 chr2 190373244 . T G 0 PASS DP=47;GPV=1;SPV=0.020223;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,4:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2743 chr2 190953950 . A ATGTG 0 PASS DP=23;GPV=1;SPV=0.23366;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:4,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2744 chr2 191723162 . G GGTGTGT 0 PASS DP=38;GPV=1;SPV=0.065471;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,7:9,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2745 chr2 191743433 . AAC A 0 PASS DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2746 chr2 192037614 . GAAAGAGAGAGAGGAGAGAAAGAGAGAGAA G 0 PASS DP=37;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2747 chr2 192532343 . G A 0 PASS DP=48;GPV=1;SPV=0.0057103;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:10,2:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2748 chr2 193202938 . T A 0 PASS DP=51;GPV=1;SPV=0.00014249;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:9,5:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2749 chr2 195195545 . C A 0 PASS DP=53;GPV=1;SPV=0.0015408;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:5,4:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2750 chr2 195567625 . T C 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:2,0:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2751 chr2 196051520 . C A 0 PASS DP=69;GPV=1;SPV=0.01728;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:14,3:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2752 chr2 196248599 . C CACAA 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2753 chr2 196362318 . TACACAC T 0 PASS DP=34;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:9,5:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2754 chr2 198043881 . C T 0 PASS DP=20;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:1,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2755 chr2 198114672 . T G 0 PASS DP=57;GPV=1;SPV=0.0035421;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:7,1:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2756 chr2 198668815 . T C 0 PASS DP=46;GPV=1;SPV=0.00034628;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:8,12:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2757 chr2 199256010 . T A 0 PASS DP=65;GPV=1;SPV=1.5662e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:14,7:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2758 chr2 199409072 . C T 0 PASS DP=78;GPV=1;SPV=0.0013049;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:17,4:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2759 chr2 200027694 . C CA 0 PASS DP=35;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2760 chr2 200657167 . T A 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2761 chr2 201247190 . CAA C 0 PASS DP=24;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,7:1,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2762 chr2 202029033 . CAA C 0 PASS DP=37;GPV=1;SPV=0.033431;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:8,5:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2763 chr2 202767157 . CTT C 0 PASS DP=43;GPV=1;SPV=0.14804;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:18,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2764 chr2 205920262 . G A 0 PASS DP=57;GPV=1;SPV=0.048094;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:20,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2765 chr2 208834439 . T A 0 PASS DP=44;GPV=1;SPV=0.06057;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2766 chr2 210361142 . G C 0 PASS DP=74;GPV=1;SPV=3.8667e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:14,9:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2767 chr2 210388024 . C T 0 PASS DP=59;GPV=1;SPV=0.0039305;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2768 chr2 213994049 . A T 0 PASS DP=49;GPV=1;SPV=0.0068919;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:4,6:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2769 chr2 215538054 . TC T 0 PASS DP=40;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:10,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2770 chr2 215538058 . T A 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2771 chr2 217528407 . A ATTTT 0 PASS DP=25;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:4,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2772 chr2 217566745 . A G 0 PASS DP=62;GPV=1;SPV=0.0032397;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:16,7:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2773 chr2 217980506 . C G 0 PASS DP=44;GPV=1;SPV=0.050612;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,4:6,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2774 chr2 218561652 . GA G 0 PASS DP=28;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2775 chr2 222407553 . C CT 0 PASS DP=31;GPV=1;SPV=0.19804;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:13,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2776 chr2 223266827 . G A 0 PASS DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2777 chr2 224535001 . AAAATAAATAAATAAATAAATAAAT A 0 PASS DP=52;GPV=1;SPV=0.13236;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,7:5,2:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2778 chr2 225878815 . C T 0 PASS DP=38;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,5:1,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2779 chr2 226242491 . G C 0 PASS DP=62;GPV=1;SPV=0.00085757;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:17,8:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2780 chr2 226706767 . C A 0 PASS DP=44;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,5:6,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2781 chr2 226981435 . C CA 0 PASS DP=61;GPV=1;SPV=0.0035718;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:12,5:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2782 chr2 227569414 . CAT C 0 PASS DP=26;GPV=1;SPV=0.03733;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:3,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2783 chr2 227660450 . T G 0 PASS DP=49;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2784 chr2 228203825 . T A 0 PASS DP=71;GPV=1;SPV=0.00051786;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:7,4:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2785 chr2 229308673 . CA C 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:5,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2786 chr2 230645163 . G C 0 PASS DP=71;GPV=1;SPV=0.0016474;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:14,5:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2787 chr2 230834879 . C CA 0 PASS DP=42;GPV=1;SPV=0.0066905;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,13:8,9:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2788 chr2 231017939 . C T 0 PASS DP=57;GPV=1;SPV=0.065325;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,5:6,1:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2789 chr2 231628970 . GA G 0 PASS DP=25;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2790 chr2 231837173 . C A 0 PASS DP=40;GPV=1;SPV=0.17925;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:13,2:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2791 chr2 232180329 . A G 0 PASS DP=35;GPV=1;SPV=0.13093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2792 chr2 232673907 . C CT 0 PASS DP=31;GPV=1;SPV=0.010538;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,10:4,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2793 chr2 233494920 . A T 0 PASS DP=23;GPV=1;SPV=0.00024999;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:3,6:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2794 chr2 233567321 . T G 0 PASS DP=59;GPV=1;SPV=0.089909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2795 chr2 233852579 . C T 0 PASS DP=46;GPV=1;SPV=0.023915;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2796 chr2 234170428 . T TTTTTTTTG 0 PASS DP=26;GPV=1;SPV=0.0091533;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:0,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2797 chr2 235090896 . CTTCT C 0 PASS DP=40;GPV=1;SPV=0.082337;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,6:5,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2798 chr2 236160238 . AGTGT A 0 PASS DP=50;GPV=1;SPV=0.0055603;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,15:3,3:12,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2799 chr2 236358897 . G T 0 PASS DP=61;GPV=1;SPV=0.00054254;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:11,6:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2800 chr2 236736477 . C T 0 PASS DP=62;GPV=1;SPV=0.0032397;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:10,5:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2801 chr2 236893471 . C T 0 PASS DP=60;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:7,2:6,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2802 chr2 238780120 . C CTT 0 PASS DP=41;GPV=1;SPV=0.020642;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:8,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2803 chr2 238783555 . C T 0 PASS DP=48;GPV=1;SPV=0.059999;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:9,5:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2804 chr2 240479065 . C T 0 PASS DP=71;GPV=1;SPV=0.0012641;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:11,5:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2805 chr2 240516151 . T G 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2806 chr2 240976023 . G A 0 PASS DP=82;GPV=1;SPV=5.7383e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:10,11:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2807 chr2 242138000 . T C 0 PASS DP=33;GPV=1;SPV=0.024789;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2808 chr20 348484 . C CGTGTGTGTGTGTGT 0 PASS DP=27;GPV=1;SPV=0.19369;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:3,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2809 chr20 850094 . T TACACACACAC 0 PASS DP=37;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:10,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2810 chr20 2842821 . GATAGACAT G 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2811 chr20 3998574 . CAA C 0 PASS DP=19;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2812 chr20 4168883 . CTATTTTATTT C 0 PASS DP=57;GPV=1;SPV=0.025866;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:10,3:13,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2813 chr20 4971299 . A AAC 0 PASS DP=45;GPV=1;SPV=0.01398;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:10,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2814 chr20 5583225 . CA C 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:3,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2815 chr20 6188805 . G A 0 PASS DP=73;GPV=1;SPV=0.00060177;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:14,6:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2816 chr20 6368317 . A G 0 PASS DP=79;GPV=1;SPV=0.011069;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:18,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2817 chr20 7051087 . A C 0 PASS DP=44;GPV=1;SPV=0.067292;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:9,2:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2818 chr20 8031594 . G GT 0 PASS DP=56;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:10,12:2,2:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2819 chr20 8031779 . GATGT G 0 PASS DP=43;GPV=1;SPV=0.045366;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:13,9:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2820 chr20 10498679 . CTTTTCT C 0 PASS DP=39;GPV=1;SPV=0.097509;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:11,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2821 chr20 10558363 . C A 0 PASS DP=38;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,4:5,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2822 chr20 11519528 . C CATATATATAT 0 PASS DP=33;GPV=1;SPV=0.039737;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2823 chr20 11945540 . C CAA 0 PASS DP=40;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,4:10,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2824 chr20 12188094 . C A 0 PASS DP=58;GPV=1;SPV=0.0072434;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:12,3:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2825 chr20 12506579 . TACACACACACACAC T 0 PASS DP=20;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:3,3:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2826 chr20 13347841 . C CA 0 PASS DP=46;GPV=1;SPV=0.0088148;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,8:11,7:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2827 chr20 13655841 . G T 0 PASS DP=51;GPV=1;SPV=0.00072644;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:11,6:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2828 chr20 14854463 . T G 0 PASS DP=48;GPV=1;SPV=0.0033296;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:12,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2829 chr20 15713995 . A G 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:16,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2830 chr20 16847421 . CT C 0 PASS DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2831 chr20 17164720 . A T 0 PASS DP=43;GPV=1;SPV=0.02905;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:9,5:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2832 chr20 19758209 . TTCCTCCTCTTCCTCC T 0 PASS DP=35;GPV=1;SPV=0.030792;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2833 chr20 19844713 . T C 0 PASS DP=35;GPV=1;SPV=0.038406;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:3,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2834 chr20 20054014 . T G 0 PASS DP=43;GPV=1;SPV=0.00062341;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,14:4,9:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2835 chr20 20098607 . C CAAA 0 PASS DP=35;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:5,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2836 chr20 20594728 . C CT 0 PASS DP=27;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2837 chr20 21215901 . T C 0 PASS DP=53;GPV=1;SPV=5.8478e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:5,4:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2838 chr20 22082830 . A ATC 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2839 chr20 22145884 . G C 0 PASS DP=49;GPV=1;SPV=0.046659;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:9,5:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2840 chr20 22907106 . A AT 0 PASS DP=39;GPV=1;SPV=0.023323;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:6,6:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2841 chr20 23648220 . A C 0 PASS DP=33;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,2:2,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2842 chr20 23794248 . T C 0 PASS DP=45;GPV=1;SPV=0.028266;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,1:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2843 chr20 24543152 . G T 0 PASS DP=60;GPV=1;SPV=0.00058827;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:11,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2844 chr20 26553908 . G A 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2845 chr20 26553909 . A G 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:1,0:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2846 chr20 26558541 . G A 0 PASS DP=72;GPV=1;SPV=0.034074;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:27,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2847 chr20 26558545 . A G 0 PASS DP=72;GPV=1;SPV=0.046841;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:26,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2848 chr20 26755238 . T A 0 PASS DP=45;GPV=1;SPV=0.013832;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:16,8:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2849 chr20 27161441 . G T 0 PASS DP=48;GPV=1;SPV=0.083817;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:9,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2850 chr20 27571425 . G A 0 PASS DP=24;GPV=1;SPV=0.27668;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:13,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2851 chr20 28498801 . GA G 0 PASS DP=81;GPV=1;SPV=0.047062;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:26,8:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2852 chr20 28513354 . T C 0 PASS DP=294;GPV=1;SPV=0.018002;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:133,17:89,10:44,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2853 chr20 28513906 . A G 0 PASS DP=179;GPV=1;SPV=0.024244;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:89,17:11,1:78,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2854 chr20 28525782 . C A 0 PASS DP=74;GPV=1;SPV=0.045506;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:10,3:21,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2855 chr20 28530574 . A T 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2856 chr20 28764397 . A T 0 PASS DP=55;GPV=1;SPV=0.0060655;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:12,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2857 chr20 28841135 . A T 0 PASS DP=489;GPV=1;SPV=0.012388;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:274:235,39:145,24:90,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2858 chr20 29048293 . G A 0 PASS DP=133;GPV=1;SPV=0.030284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:59,14:27,10:32,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2859 chr20 29053060 . T G 0 PASS DP=163;GPV=1;SPV=0.01669;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:87,11:32,3:55,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2860 chr20 29074228 . C T 0 PASS DP=330;GPV=1;SPV=0.011905;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:160,18:78,6:82,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2861 chr20 29092153 . T A 0 PASS DP=174;GPV=1;SPV=0.0081632;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:76,16:49,7:27,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2862 chr20 29484239 . C T 0 PASS DP=157;GPV=1;SPV=0.0056503;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:59,20:33,4:26,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2863 chr20 29484262 . T C 0 PASS DP=140;GPV=1;SPV=0.0027154;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:53,16:28,4:25,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2864 chr20 29513191 . C T 0 PASS DP=269;GPV=1;SPV=0.015832;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:126,29:59,9:67,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2865 chr20 29518883 . T A 0 PASS DP=139;GPV=1;SPV=0.044612;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:74,12:38,6:36,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2866 chr20 29764762 . A T 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:5,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2867 chr20 29775827 . A G 0 PASS DP=86;GPV=1;SPV=0.031184;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:17,4:22,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2868 chr20 29813639 . A G 0 PASS DP=128;GPV=1;SPV=0.036467;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:59,12:35,2:24,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2869 chr20 29938136 . C A 0 PASS DP=91;GPV=1;SPV=0.044012;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:32,11:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2870 chr20 29993826 . C T 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2871 chr20 30019959 . C G 0 PASS DP=19;GPV=1;SPV=0.040043;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,5:0,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2872 chr20 30177373 . T C 0 PASS DP=68;GPV=1;SPV=0.0069365;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:20,6:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2873 chr20 30218923 . GGT G 0 PASS DP=131;GPV=1;SPV=0.038382;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:61,12:33,5:28,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2874 chr20 30319291 . T C 0 PASS DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2875 chr20 30756889 . T G 0 PASS DP=141;GPV=1;SPV=0.019521;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:71,13:23,3:48,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2876 chr20 31055141 . T A 0 PASS DP=190;GPV=1;SPV=0.022857;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:80,18:44,10:36,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2877 chr20 31064593 . T TGGAAA 0 PASS DP=330;GPV=1;SPV=0.0271;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:129,22:58,5:71,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2878 chr20 31072067 . G GTGGAATGGAA 0 PASS DP=453;GPV=1;SPV=0.0097515;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:266:150,27:81,19:69,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2879 chr20 31832757 . C T 0 PASS DP=57;GPV=1;SPV=0.003828;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:13,6:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2880 chr20 32094705 . AAAAGAAAGAAAG A 0 PASS DP=39;GPV=1;SPV=0.076981;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:11,6:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2881 chr20 32176929 . C G 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:12,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2882 chr20 32683247 . C A 0 PASS DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2883 chr20 32964005 . C CCTTCTT 0 PASS DP=46;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:14,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2884 chr20 33087753 . C CACACACACACAA 0 PASS DP=64;GPV=1;SPV=0.017877;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,12:12,6:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2885 chr20 33128672 . T C 0 PASS DP=67;GPV=1;SPV=0.035909;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,6:18,3:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2886 chr20 33486424 . TTG T 0 PASS DP=58;GPV=1;SPV=0.10954;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2887 chr20 34659444 . G C 0 PASS DP=50;GPV=1;SPV=0.11202;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:17,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2888 chr20 34659445 . G A 0 PASS DP=60;GPV=1;SPV=0.18741;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:17,3:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2889 chr20 35644636 . CTGAGAA C 0 PASS DP=59;GPV=1;SPV=0.0029127;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:12,7:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2890 chr20 35722427 . A AAT 0 PASS DP=34;GPV=1;SPV=0.019548;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2891 chr20 35756444 . CAAA C 0 PASS DP=35;GPV=1;SPV=0.00096242;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,15:6,13:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2892 chr20 37067781 . A C 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2893 chr20 37677407 . T TGAGAGAGAGAGAGA 0 PASS DP=29;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:4,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2894 chr20 38122424 . TATATATATATATACACAC T 0 PASS DP=26;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,2:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2895 chr20 38124075 . TTA T 0 PASS DP=28;GPV=1;SPV=0.0096618;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2896 chr20 39546333 . G T 0 PASS DP=70;GPV=1;SPV=0.0011917;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:11,7:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2897 chr20 39944581 . C CGTGT 0 PASS DP=44;GPV=1;SPV=0.018762;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:10,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2898 chr20 40435661 . C T 0 PASS DP=68;GPV=1;SPV=0.071891;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:23,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2899 chr20 40799508 . G A 0 PASS DP=67;GPV=1;SPV=0.0017052;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:15,9:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2900 chr20 42794816 . T C 0 PASS DP=26;GPV=1;SPV=0.028284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:2,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2901 chr20 43761217 . T G 0 PASS DP=48;GPV=1;SPV=0.069354;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:7,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2902 chr20 44352966 . C CA 0 PASS DP=30;GPV=1;SPV=0.10927;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,6:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2903 chr20 44722467 . T C 0 PASS DP=27;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:4,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2904 chr20 47191415 . GTGGATGGATGGATGGA G 0 PASS DP=46;GPV=1;SPV=0.0016586;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:3,7:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2905 chr20 47510432 . C CAAAAAAAAAA 0 PASS DP=18;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2906 chr20 47890678 . G A 0 PASS DP=57;GPV=1;SPV=0.023472;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2907 chr20 48250829 . A C 0 PASS DP=33;GPV=1;SPV=0.046816;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2908 chr20 48573458 . AGTTCTCATCACCAACTGCCTCATCCTGGTTTGAAGACAG A 0 PASS DP=29;GPV=1;SPV=0.0073297;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2909 chr20 49022432 . A C 0 PASS DP=38;GPV=1;SPV=0.036566;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,3:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2910 chr20 49254660 . G C 0 PASS DP=43;GPV=1;SPV=0.0013432;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,17:9,11:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2911 chr20 49323619 . TAA T 0 PASS DP=26;GPV=1;SPV=0.0032734;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,7:2,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2912 chr20 49401268 . T C 0 PASS DP=22;GPV=1;SPV=0.0047847;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2913 chr20 50094038 . T A 0 PASS DP=25;GPV=1;SPV=0.18447;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:4,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2914 chr20 50681241 . AAG A 0 PASS DP=29;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2915 chr20 50782593 . A T 0 PASS DP=56;GPV=1;SPV=0.022677;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:13,5:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2916 chr20 51540658 . G T 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2917 chr20 52733811 . A C 0 PASS DP=38;GPV=1;SPV=0.04287;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:5,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2918 chr20 52986401 . C CA 0 PASS DP=35;GPV=1;SPV=0.01441;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:6,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2919 chr20 53595046 . C CA 0 PASS DP=17;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,3:3,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2920 chr20 53670953 . A AG 0 PASS DP=34;GPV=1;SPV=0.0031242;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:4,6:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2921 chr20 53853717 . GGAAGGAAGGAAAGAAA G 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2922 chr20 54058593 . C CTT 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2923 chr20 55688941 . A T 0 PASS DP=48;GPV=1;SPV=0.010968;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2924 chr20 55977899 . T C 0 PASS DP=29;GPV=1;SPV=0.11424;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:3,4:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2925 chr20 56735857 . G A 0 PASS DP=33;GPV=1;SPV=0.0004781;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,13:0,2:6,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2926 chr20 56888307 . A T 0 PASS DP=65;GPV=1;SPV=0.00051706;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:7,2:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2927 chr20 57031886 . TG T 0 PASS DP=30;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:1,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2928 chr20 57550651 . A G 0 PASS DP=55;GPV=1;SPV=0.0016175;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:7,8:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2929 chr20 57850478 . G A 0 PASS DP=59;GPV=1;SPV=0.0020871;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:6,7:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2930 chr20 57931378 . A G 0 PASS DP=63;GPV=1;SPV=0.014582;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:16,6:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2931 chr20 58974064 . GGAGGAGGAAGAGGAAGAA G 0 PASS DP=44;GPV=1;SPV=0.011329;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2932 chr20 59050022 . C CTCTTTCTTTCTT 0 PASS DP=66;GPV=1;SPV=0.0096894;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,6:2,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2933 chr20 60298262 . G A 0 PASS DP=64;GPV=1;SPV=0.00038112;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:14,8:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2934 chr20 60356443 . CATATATATATAT C 0 PASS DP=21;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2935 chr20 60937919 . TAGTC T 0 PASS DP=23;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:3,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2936 chr20 60992639 . G T 0 PASS DP=46;GPV=1;SPV=0.34103;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,4:6,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2937 chr20 61242949 . G A 0 PASS DP=47;GPV=1;SPV=0.0095364;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2938 chr20 63113757 . C CA 0 PASS DP=47;GPV=1;SPV=0.02916;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,7:17,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2939 chr20 63550977 . G T 0 PASS DP=72;GPV=1;SPV=0.00012058;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:16,7:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2940 chr20 64201999 . CCGCGTGTCGGGAACCCCT C 0 PASS DP=67;GPV=1;SPV=0.025141;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:12,6:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2941 chr21 5221111 . C T 0 PASS DP=309;GPV=1;SPV=0.041809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:147,24:90,12:57,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2942 chr21 5233816 . G T 0 PASS DP=368;GPV=1;SPV=0.037938;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:196,25:133,17:63,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2943 chr21 5336009 . C T 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2944 chr21 6439083 . C T 0 PASS DP=17;GPV=1;SPV=0.013369;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,1:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2945 chr21 7259334 . A AGGAAT 0 PASS DP=130;GPV=1;SPV=0.010542;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:66,8:31,5:35,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2946 chr21 7272733 . G A 0 PASS DP=127;GPV=1;SPV=0.026258;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:53,13:32,6:21,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2947 chr21 7318241 . G C 0 PASS DP=173;GPV=1;SPV=0.016977;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:76,22:38,5:38,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2948 chr21 7923952 . C T 0 PASS DP=160;GPV=1;SPV=0.002962;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:67,18:32,10:35,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2949 chr21 7925632 . G A 0 PASS DP=153;GPV=1;SPV=0.018535;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:73,22:36,12:37,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2950 chr21 7930930 . G A 0 PASS DP=220;GPV=1;SPV=0.046012;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:102,23:47,14:55,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2951 chr21 7947527 . CCCATT C 0 PASS DP=166;GPV=1;SPV=0.021582;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:67,17:30,6:37,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2952 chr21 7954799 . G A 0 PASS DP=208;GPV=1;SPV=0.024987;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:95,23:46,11:49,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2953 chr21 7956049 . A C 0 PASS DP=192;GPV=1;SPV=0.041181;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:85,20:38,11:47,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2954 chr21 7957932 . T A 0 PASS DP=165;GPV=1;SPV=0.011693;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:63,20:32,11:31,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2955 chr21 7958822 . T A 0 PASS DP=387;GPV=1;SPV=0.048533;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:183,34:90,15:93,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2956 chr21 8233759 . GTCTC G 0 PASS DP=93;GPV=1;SPV=0.010825;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:28,7:16,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2957 chr21 8441992 . GGGC G 0 PASS DP=2900;GPV=1;SPV=0.042171;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1670:1429,170:517,60:912,110
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2958 chr21 8529040 . T C 0 PASS DP=235;GPV=1;SPV=0.0075541;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:119,17:60,12:59,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2959 chr21 8563236 . AC A 0 PASS DP=120;GPV=1;SPV=0.0071452;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:50,9:19,2:31,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2960 chr21 8591154 . A T 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2961 chr21 8664871 . GAAATGATGAGACA G 0 PASS DP=97;GPV=1;SPV=0.038552;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:26,3:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2962 chr21 8683354 . C T 0 PASS DP=161;GPV=1;SPV=0.0040996;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:66,19:39,11:27,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2963 chr21 8700048 . G A 0 PASS DP=138;GPV=1;SPV=0.017086;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:57,16:29,10:28,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2964 chr21 8770206 . T C 0 PASS DP=211;GPV=1;SPV=0.038583;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:92,21:42,13:50,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2965 chr21 8783441 . G GT 0 PASS DP=237;GPV=1;SPV=0.030156;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:94,21:44,10:50,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2966 chr21 8786423 . TTCC T 0 PASS DP=266;GPV=1;SPV=0.047543;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:124,22:79,15:45,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2967 chr21 8798435 . C T 0 PASS DP=173;GPV=1;SPV=0.026255;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:77,18:50,8:27,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2968 chr21 8806432 . A G 0 PASS DP=43;GPV=1;SPV=0.0024099;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:4,3:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2969 chr21 8819260 . C CT 0 PASS DP=73;GPV=1;SPV=0.0059286;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:12,8:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2970 chr21 8824094 . T TA 0 PASS DP=27;GPV=1;SPV=0.11785;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:4,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2971 chr21 8832187 . A C 0 PASS DP=129;GPV=1;SPV=0.0024352;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:45,17:22,8:23,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2972 chr21 8850324 . C T 0 PASS DP=502;GPV=1;SPV=0.01289;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:250,28:132,16:118,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2973 chr21 8853786 . C T 0 PASS DP=530;GPV=1;SPV=0.035337;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:287:257,30:129,11:128,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2974 chr21 8855438 . T A 0 PASS DP=325;GPV=1;SPV=0.041858;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:130,17:93,15:37,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2975 chr21 8857169 . C T 0 PASS DP=287;GPV=1;SPV=0.0012623;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:150,19:77,10:73,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2976 chr21 8858565 . G C 0 PASS DP=575;GPV=1;SPV=0.031343;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:329:295,34:187,16:108,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2977 chr21 8864192 . G A 0 PASS DP=447;GPV=1;SPV=0.043599;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:248:219,29:95,9:124,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2978 chr21 8882912 . C G 0 PASS DP=234;GPV=1;SPV=0.031042;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:107,26:61,16:46,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2979 chr21 8997035 . C T 0 PASS DP=267;GPV=1;SPV=0.00075409;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:119,26:47,13:72,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2980 chr21 9020577 . G C 0 PASS DP=286;GPV=1;SPV=0.035284;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:135,25:61,15:74,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2981 chr21 9061147 . G A 0 PASS DP=269;GPV=1;SPV=0.023936;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:123,19:54,9:69,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2982 chr21 9063715 . C T 0 PASS DP=309;GPV=1;SPV=0.017066;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:144,20:68,11:76,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2983 chr21 9079810 . A G 0 PASS DP=158;GPV=1;SPV=0.0018708;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:76,18:34,5:42,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2984 chr21 9084776 . C T 0 PASS DP=164;GPV=1;SPV=0.036095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:70,18:33,8:37,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2985 chr21 9088617 . G A 0 PASS DP=303;GPV=1;SPV=0.0283;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:179:156,23:46,8:110,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2986 chr21 9093909 . T A 0 PASS DP=234;GPV=1;SPV=0.032151;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:100,20:33,8:67,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2987 chr21 9095993 . C G 0 PASS DP=201;GPV=1;SPV=0.01759;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:90,14:37,11:53,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2988 chr21 9100763 . G A 0 PASS DP=493;GPV=1;SPV=0.011475;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:264:228,36:111,13:117,23
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2989 chr21 9107269 . G C 0 PASS DP=240;GPV=1;SPV=0.018499;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:108,22:55,15:53,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2990 chr21 9127820 . T C 0 PASS DP=480;GPV=1;SPV=0.039051;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:264:223,41:121,16:102,25
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2991 chr21 9133399 . A G 0 PASS DP=273;GPV=1;SPV=0.032516;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:140,23:71,8:69,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2992 chr21 9134566 . G T 0 PASS DP=405;GPV=1;SPV=0.02972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:234:196,38:84,15:112,23
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2993 chr21 9134738 . T TC 0 PASS DP=351;GPV=1;SPV=0.0034009;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:157,23:90,18:67,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2994 chr21 9177783 . G A 0 PASS DP=401;GPV=1;SPV=0.035694;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:205:173,32:83,15:90,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2995 chr21 9183977 . G T 0 PASS DP=396;GPV=1;SPV=0.0064327;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:206:169,37:85,16:84,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2996 chr21 9249156 . T A 0 PASS DP=418;GPV=1;SPV=0.0014397;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:169,27:88,16:81,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2997 chr21 9250971 . G A 0 PASS DP=449;GPV=1;SPV=0.049173;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:251:222,29:111,21:111,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2998 chr21 9253375 . C A 0 PASS DP=569;GPV=1;SPV=0.014473;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:310:275,35:165,22:110,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
2999 chr21 9255185 . T A 0 PASS DP=539;GPV=1;SPV=0.012857;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:301:269,32:134,21:135,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3000 chr21 9255403 . C T 0 PASS DP=512;GPV=1;SPV=0.046245;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:282:252,30:125,17:127,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3001 chr21 9257802 . A T 0 PASS DP=488;GPV=1;SPV=0.047707;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:260:232,28:111,9:121,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3002 chr21 9257908 . G T 0 PASS DP=608;GPV=1;SPV=0.011602;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:323:280,43:133,19:147,24
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3003 chr21 9259952 . C A 0 PASS DP=521;GPV=1;SPV=0.010574;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:257:213,26:118,12:95,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3004 chr21 9269934 . C G 0 PASS DP=81;GPV=1;SPV=0.032349;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,8:17,6:29,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3005 chr21 9271680 . G T 0 PASS DP=56;GPV=1;SPV=0.12627;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:29,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3006 chr21 9274079 . G GA 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3007 chr21 9281724 . T C 0 PASS DP=242;GPV=1;SPV=0.014968;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:121,23:79,15:42,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3008 chr21 9281917 . C A 0 PASS DP=241;GPV=1;SPV=0.022598;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:119,18:52,10:67,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3009 chr21 9290140 . T C 0 PASS DP=350;GPV=1;SPV=0.037032;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:159,18:74,7:85,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3010 chr21 9296068 . T A 0 PASS DP=278;GPV=1;SPV=0.02408;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:138,25:52,6:86,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3011 chr21 9296372 . A AG 0 PASS DP=353;GPV=1;SPV=0.013408;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:182,25:96,17:86,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3012 chr21 9298276 . G A 0 PASS DP=340;GPV=1;SPV=0.036769;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:151,30:55,13:96,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3013 chr21 9302284 . TG T 0 PASS DP=423;GPV=1;SPV=0.036025;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:199,24:95,11:104,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3014 chr21 9302286 . T TAA 0 PASS DP=419;GPV=1;SPV=0.043678;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:219:182,24:86,9:96,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3015 chr21 9302543 . G A 0 PASS DP=307;GPV=1;SPV=0.047274;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:160,24:82,7:78,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3016 chr21 9305569 . A T 0 PASS DP=312;GPV=1;SPV=0.004428;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:155,25:73,11:82,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3017 chr21 9307181 . T G 0 PASS DP=374;GPV=1;SPV=0.033666;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:215:190,25:82,11:108,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3018 chr21 9309745 . C T 0 PASS DP=334;GPV=1;SPV=0.0012439;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:174,30:92,20:82,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3019 chr21 9312447 . C T 0 PASS DP=423;GPV=1;SPV=0.047154;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:236:207,29:109,17:98,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3020 chr21 9314168 . C G 0 PASS DP=483;GPV=1;SPV=8.5725e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:273:215,58:104,32:111,26
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3021 chr21 9317020 . G C 0 PASS DP=263;GPV=1;SPV=0.01741;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:111,19:64,14:47,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3022 chr21 9320170 . G A 0 PASS DP=407;GPV=1;SPV=0.0012808;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:180,47:65,33:115,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3023 chr21 9321156 . G C 0 PASS DP=358;GPV=1;SPV=0.0034652;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:199:175,24:77,13:98,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3024 chr21 9324923 . C T 0 PASS DP=345;GPV=1;SPV=0.033353;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:171,29:98,14:73,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3025 chr21 9325560 . C T 0 PASS DP=516;GPV=1;SPV=0.022753;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:296:266,30:148,16:118,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3026 chr21 9327769 . G A 0 PASS DP=361;GPV=1;SPV=0.0017408;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:194:168,26:90,16:78,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3027 chr21 9327799 . G A 0 PASS DP=405;GPV=1;SPV=8.6454e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:220:189,31:92,20:97,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3028 chr21 9329414 . G C 0 PASS DP=377;GPV=1;SPV=0.019855;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:198:171,27:76,14:95,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3029 chr21 9331000 . C T 0 PASS DP=284;GPV=1;SPV=0.0013678;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:125,31:63,18:62,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3030 chr21 9331071 . C T 0 PASS DP=305;GPV=1;SPV=9.4138e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:170:134,36:68,21:66,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3031 chr21 9331208 . T C 0 PASS DP=326;GPV=1;SPV=0.0090971;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:199:162,37:82,17:80,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3032 chr21 9333403 . A T 0 PASS DP=329;GPV=1;SPV=0.0066175;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:190:158,32:76,18:82,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3033 chr21 9333753 . G A 0 PASS DP=265;GPV=1;SPV=0.0015494;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:120,34:50,17:70,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3034 chr21 9335609 . T G 0 PASS DP=259;GPV=1;SPV=0.035129;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:121,23:70,9:51,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3035 chr21 9337270 . A T 0 PASS DP=282;GPV=1;SPV=0.0053293;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:120,29:54,14:66,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3036 chr21 9338092 . T C 0 PASS DP=290;GPV=1;SPV=0.00086025;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:127,32:53,15:74,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3037 chr21 9340700 . G C 0 PASS DP=297;GPV=1;SPV=0.0068861;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:138,28:66,15:72,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3038 chr21 9342509 . G A 0 PASS DP=342;GPV=1;SPV=0.021826;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:160,25:61,11:99,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3039 chr21 9346496 . A T 0 PASS DP=353;GPV=1;SPV=0.036759;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:160,25:82,14:78,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3040 chr21 9346571 . T C 0 PASS DP=392;GPV=1;SPV=0.02125;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:173,20:89,5:84,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3041 chr21 9349138 . G GC 0 PASS DP=307;GPV=1;SPV=0.049995;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:149,20:79,10:70,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3042 chr21 9350854 . C T 0 PASS DP=387;GPV=1;SPV=0.0078513;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:190,31:95,17:95,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3043 chr21 9353047 . G T 0 PASS DP=341;GPV=1;SPV=0.0063786;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:148,34:85,19:63,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3044 chr21 9354467 . C T 0 PASS DP=332;GPV=1;SPV=0.0098387;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:188:162,26:49,11:113,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3045 chr21 9354918 . T G 0 PASS DP=353;GPV=1;SPV=0.046627;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:192:166,26:90,11:76,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3046 chr21 9356868 . C T 0 PASS DP=464;GPV=1;SPV=0.021887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:265:237,28:132,13:105,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3047 chr21 9358898 . T C 0 PASS DP=352;GPV=1;SPV=0.020415;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:173:144,29:69,16:75,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3048 chr21 9363273 . C T 0 PASS DP=321;GPV=1;SPV=0.012606;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:192:168,24:97,16:71,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3049 chr21 9363641 . C T 0 PASS DP=241;GPV=1;SPV=0.045542;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:100,21:41,10:59,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3050 chr21 9367042 . A G 0 PASS DP=642;GPV=1;SPV=0.0028539;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:356:318,38:167,21:151,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3051 chr21 9368429 . C T 0 PASS DP=683;GPV=1;SPV=0.046887;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:380:340,40:158,21:182,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3052 chr21 9369655 . G A 0 PASS DP=525;GPV=1;SPV=0.036189;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:275:240,35:130,21:110,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3053 chr21 9370242 . G A 0 PASS DP=444;GPV=1;SPV=0.0022937;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:194,33:85,16:109,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3054 chr21 9373504 . G GAGAT 0 PASS DP=347;GPV=1;SPV=0.019397;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:194:162,32:72,14:90,18
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3055 chr21 9568769 . C A 0 PASS DP=153;GPV=1;SPV=0.0005032;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:60,29:34,16:26,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3056 chr21 9569908 . C T 0 PASS DP=200;GPV=1;SPV=0.036987;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:82,19:46,9:36,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3057 chr21 9573354 . C T 0 PASS DP=140;GPV=1;SPV=0.018604;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:56,17:29,10:27,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3058 chr21 9575796 . C T 0 PASS DP=234;GPV=1;SPV=0.039889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:115,21:57,10:58,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3059 chr21 9579060 . A G 0 PASS DP=161;GPV=1;SPV=0.02489;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:48,14:32,6:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3060 chr21 9585984 . C G 0 PASS DP=249;GPV=1;SPV=0.0098747;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:98,24:49,12:49,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3061 chr21 9593820 . C T 0 PASS DP=165;GPV=1;SPV=0.016174;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:76,16:24,8:52,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3062 chr21 9595670 . C T 0 PASS DP=161;GPV=1;SPV=0.025548;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:62,14:36,6:26,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3063 chr21 9604294 . C T 0 PASS DP=144;GPV=1;SPV=0.036297;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:61,14:28,6:33,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3064 chr21 9611369 . C CT 0 PASS DP=85;GPV=1;SPV=0.03177;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,12:24,8:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3065 chr21 9622929 . C T 0 PASS DP=135;GPV=1;SPV=0.026582;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:58,16:38,6:20,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3066 chr21 9644497 . G T 0 PASS DP=146;GPV=1;SPV=0.019348;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:57,18:40,8:17,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3067 chr21 9653120 . A G 0 PASS DP=141;GPV=1;SPV=0.0013323;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:54,25:27,13:27,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3068 chr21 9691585 . C T 0 PASS DP=160;GPV=1;SPV=0.014408;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:74,24:35,13:39,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3069 chr21 9700317 . G T 0 PASS DP=120;GPV=1;SPV=0.035691;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:47,13:29,4:18,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3070 chr21 9717066 . A G 0 PASS DP=165;GPV=1;SPV=0.03647;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:79,12:45,7:34,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3071 chr21 9722947 . A G 0 PASS DP=162;GPV=1;SPV=0.022057;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:71,16:33,10:38,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3072 chr21 9765078 . GTATATATATA G 0 PASS DP=72;GPV=1;SPV=0.0027332;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:14,10:10,8:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3073 chr21 9806006 . G A 0 PASS DP=155;GPV=1;SPV=0.0014147;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:69,24:29,11:40,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3074 chr21 9820500 . C G 0 PASS DP=414;GPV=1;SPV=0.0030957;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:186,28:100,18:86,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3075 chr21 9820892 . C G 0 PASS DP=427;GPV=1;SPV=0.047126;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:225:181,33:92,18:89,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3076 chr21 9821495 . G C 0 PASS DP=541;GPV=1;SPV=0.035867;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:316:269,47:113,25:156,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3077 chr21 9824116 . C T 0 PASS DP=420;GPV=1;SPV=0.013515;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:247:210,37:131,25:79,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3078 chr21 9827822 . G A 0 PASS DP=75;GPV=1;SPV=0.047138;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:19,6:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3079 chr21 9874259 . A T 0 PASS DP=164;GPV=1;SPV=0.032088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:76,14:39,3:37,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3080 chr21 9885332 . CT C 0 PASS DP=156;GPV=1;SPV=0.013025;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:68,21:36,15:32,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3081 chr21 9907282 . AT A 0 PASS DP=154;GPV=1;SPV=0.018567;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:70,8:35,3:35,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3082 chr21 9922536 . A T 0 PASS DP=136;GPV=1;SPV=0.00058342;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:57,10:25,7:32,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3083 chr21 9983152 . A G 0 PASS DP=150;GPV=1;SPV=0.022997;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:53,16:26,8:27,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3084 chr21 10002648 . C G 0 PASS DP=117;GPV=1;SPV=0.015345;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:47,17:20,11:27,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3085 chr21 10334729 . C T 0 PASS DP=320;GPV=1;SPV=0.035482;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:195:167,28:88,20:79,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3086 chr21 10360392 . G A 0 PASS DP=443;GPV=1;SPV=0.03335;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:238:204,34:109,15:95,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3087 chr21 10369115 . C T 0 PASS DP=161;GPV=1;SPV=0.032698;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:66,17:22,3:44,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3088 chr21 10393398 . A C 0 PASS DP=239;GPV=1;SPV=0.049025;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:116,17:75,11:41,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3089 chr21 10401605 . T C 0 PASS DP=251;GPV=1;SPV=0.016593;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:114,18:73,15:41,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3090 chr21 10421129 . C T 0 PASS DP=199;GPV=1;SPV=0.0065045;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:87,21:39,9:48,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3091 chr21 10427641 . A G 0 PASS DP=380;GPV=1;SPV=0.0011008;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:213:176,37:88,18:88,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3092 chr21 10434766 . G A 0 PASS DP=158;GPV=1;SPV=0.043736;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:70,10:32,6:38,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3093 chr21 10442800 . G T 0 PASS DP=230;GPV=1;SPV=0.0040681;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:106,27:58,13:48,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3094 chr21 10443821 . C A 0 PASS DP=163;GPV=1;SPV=0.020561;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:89,11:44,6:45,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3095 chr21 10446922 . G T 0 PASS DP=310;GPV=1;SPV=0.031393;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:162,18:96,12:66,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3096 chr21 10468490 . T TGTGTGC 0 PASS DP=306;GPV=1;SPV=0.0029326;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:136,38:73,14:63,24
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3097 chr21 10480037 . C G 0 PASS DP=351;GPV=1;SPV=0.03139;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:160,26:83,16:77,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3098 chr21 10581802 . G A 0 PASS DP=160;GPV=1;SPV=0.023901;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:81,19:36,8:45,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3099 chr21 10656340 . A C 0 PASS DP=126;GPV=1;SPV=0.0083471;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:32,5:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3100 chr21 10685060 . C G 0 PASS DP=151;GPV=1;SPV=0.006956;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:70,25:30,12:40,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3101 chr21 10805196 . CA C 0 PASS DP=239;GPV=1;SPV=0.010772;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:105,28:60,18:45,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3102 chr21 12979753 . G T 0 PASS DP=161;GPV=1;SPV=0.035953;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:71,17:38,6:33,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3103 chr21 13069293 . G T 0 PASS DP=67;GPV=1;SPV=0.076851;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3104 chr21 13485129 . T C 0 PASS DP=82;GPV=1;SPV=0.012989;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:19,11:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3105 chr21 13885151 . A C 0 PASS DP=18;GPV=1;SPV=0.022967;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:1,1:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3106 chr21 13942417 . A G 0 PASS DP=50;GPV=1;SPV=0.00094846;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:6,9:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3107 chr21 14017766 . T C 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3108 chr21 16256630 . T G 0 PASS DP=57;GPV=1;SPV=0.00045891;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,5:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3109 chr21 16284658 . T TTG 0 PASS DP=45;GPV=1;SPV=0.049827;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:10,6:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3110 chr21 17365348 . G A 0 PASS DP=61;GPV=1;SPV=0.0013438;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3111 chr21 17703814 . A G 0 PASS DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,8:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3112 chr21 18369973 . C CAAAA 0 PASS DP=28;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:1,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3113 chr21 18387612 . TACACACACACAC T 0 PASS DP=39;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,12:4,5:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3114 chr21 18705237 . A C 0 PASS DP=59;GPV=1;SPV=3.7005e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:10,8:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3115 chr21 19154405 . A G 0 PASS DP=46;GPV=1;SPV=0.0062692;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3116 chr21 19345908 . A ATGTC 0 PASS DP=62;GPV=1;SPV=0.040844;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,6:16,1:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3117 chr21 19729409 . A AT 0 PASS DP=27;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,6:4,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3118 chr21 20488919 . A T 0 PASS DP=62;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:1,3:0,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3119 chr21 20969566 . T TTACAATGAAAAATTCAG 0 PASS DP=51;GPV=1;SPV=0.025865;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3120 chr21 21343352 . T TACACACACAC 0 PASS DP=31;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:3,4:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3121 chr21 21742582 . A AT 0 PASS DP=27;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,7:1,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3122 chr21 24243452 . T A 0 PASS DP=49;GPV=1;SPV=0.05154;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3123 chr21 25220910 . AT A 0 PASS DP=54;GPV=1;SPV=0.01828;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:13,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3124 chr21 27131296 . C A 0 PASS DP=71;GPV=1;SPV=0.0016717;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:12,7:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3125 chr21 27298943 . TA T 0 PASS DP=56;GPV=1;SPV=0.038795;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,5:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3126 chr21 27448654 . T A 0 PASS DP=61;GPV=1;SPV=0.001437;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:10,4:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3127 chr21 27502369 . A G 0 PASS DP=51;GPV=1;SPV=0.0015405;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:9,6:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3128 chr21 27531878 . C CT 0 PASS DP=28;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:4,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3129 chr21 27904417 . A AAAG 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3130 chr21 27951396 . A AT 0 PASS DP=50;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:14,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3131 chr21 28179992 . C CTA 0 PASS DP=63;GPV=1;SPV=0.15237;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,6:18,5:22,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3132 chr21 28864900 . T TAG 0 PASS DP=45;GPV=1;SPV=0.043206;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:7,6:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3133 chr21 29296049 . CAA C 0 PASS DP=33;GPV=1;SPV=0.025586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:10,11:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3134 chr21 29519883 . T A 0 PASS DP=30;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,5:3,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3135 chr21 29860020 . T C 0 PASS DP=65;GPV=1;SPV=0.0085539;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:17,8:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3136 chr21 29905619 . ATTTT A 0 PASS DP=29;GPV=1;SPV=0.0219;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3137 chr21 30153223 . A G 0 PASS DP=53;GPV=1;SPV=0.048244;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:12,1:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3138 chr21 30558081 . CT C 0 PASS DP=25;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,9:0,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3139 chr21 30826651 . T TA 0 PASS DP=35;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:5,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3140 chr21 30866484 . G GTA 0 PASS DP=31;GPV=1;SPV=0.0018511;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,8:2,4:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3141 chr21 31584399 . C CTTT 0 PASS DP=25;GPV=1;SPV=0.20553;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:8,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3142 chr21 32652938 . G T 0 PASS DP=75;GPV=1;SPV=6.9826e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:12,12:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3143 chr21 32892695 . CTT C 0 PASS DP=33;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:0,0:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3144 chr21 35554234 . C CT 0 PASS DP=20;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:2,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3145 chr21 35851420 . T A 0 PASS DP=48;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,3:1,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3146 chr21 35865916 . G C 0 PASS DP=66;GPV=1;SPV=0.019153;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:22,4:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3147 chr21 36644650 . ATATATG A 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3148 chr21 38329455 . T C 0 PASS DP=68;GPV=1;SPV=0.015866;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:14,5:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3149 chr21 38799741 . G C 0 PASS DP=77;GPV=1;SPV=0.022806;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:26,5:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3150 chr21 38905139 . T TAGATAGATAGATAGATAGATAGACAGAC 0 PASS DP=44;GPV=1;SPV=0.18048;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,5:12,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3151 chr21 38915434 . C T 0 PASS DP=48;GPV=1;SPV=0.038416;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3152 chr21 39917573 . A G 0 PASS DP=68;GPV=1;SPV=4.1799e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:16,24:8,14:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3153 chr21 39974524 . C T 0 PASS DP=36;GPV=1;SPV=0.038306;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3154 chr21 40151130 . G A 0 PASS DP=75;GPV=1;SPV=0.019542;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:23,5:20,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3155 chr21 40266635 . T TTATATATATATA 0 PASS DP=26;GPV=1;SPV=0.29464;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3156 chr21 40453040 . T TTGTGTG 0 PASS DP=36;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:7,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3157 chr21 40765100 . A G 0 PASS DP=82;GPV=1;SPV=0.038274;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:15,4:9,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3158 chr21 40856357 . T A 0 PASS DP=85;GPV=1;SPV=0.009884;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:20,8:5,3:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3159 chr21 41041897 . AAG A 0 PASS DP=48;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,4:8,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3160 chr21 41179498 . C G 0 PASS DP=28;GPV=1;SPV=0.036089;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:6,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3161 chr21 41518516 . AC A 0 PASS DP=59;GPV=1;SPV=0.022054;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:19,7:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3162 chr21 41604381 . CTTTCTTTCTCTTTCTTTCTTTCT C 0 PASS DP=63;GPV=1;SPV=0.011513;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:4,3:28,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3163 chr21 42401381 . A T 0 PASS DP=41;GPV=1;SPV=0.051203;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:14,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3164 chr21 43736629 . GTT G 0 PASS DP=40;GPV=1;SPV=0.0054348;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,13:4,11:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3165 chr21 43965613 . G T 0 PASS DP=76;GPV=1;SPV=0.045689;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:29,1:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3166 chr21 44676286 . C T 0 PASS DP=81;GPV=1;SPV=0.0034821;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:20,7:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3167 chr21 44925418 . GGGAGGGAAGGAA G 0 PASS DP=44;GPV=1;SPV=0.013474;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:12,6:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3168 chr21 45511088 . C T 0 PASS DP=32;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:7,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3169 chr21 45987789 . CG C 0 PASS DP=33;GPV=1;SPV=0.0031242;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:2,7:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3170 chr21 46134707 . C CAGGGTGAGGGTG 0 PASS DP=34;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,11:6,7:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3171 chr21 46135340 . CAATGTCCCCTCA C 0 PASS DP=39;GPV=1;SPV=0.019042;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:4,3:10,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3172 chr21 46201032 . T C 0 PASS DP=50;GPV=1;SPV=0.19313;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,4:4,2:25,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3173 chr21 46503681 . CTTTT C 0 PASS DP=36;GPV=1;SPV=0.041461;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:4,4:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3174 chr21 46506724 . T TTTC 0 PASS DP=53;GPV=1;SPV=0.1356;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:5,2:27,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3175 chr21 46523393 . AT A 0 PASS DP=53;GPV=1;SPV=0.018157;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:16,13:10,8:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3176 chr22 10519159 . A G 0 PASS DP=77;GPV=1;SPV=0.016106;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:31,10:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3177 chr22 10540138 . T C 0 PASS DP=65;GPV=1;SPV=0.053114;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:21,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3178 chr22 10692797 . C A 0 PASS DP=249;GPV=1;SPV=0.0086306;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:108,25:61,8:47,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3179 chr22 10711502 . G A 0 PASS DP=202;GPV=1;SPV=0.012888;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:84,19:42,10:42,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3180 chr22 10718972 . C A 0 PASS DP=97;GPV=1;SPV=0.012144;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:19,3:23,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3181 chr22 10719050 . C CTCCAT 0 PASS DP=64;GPV=1;SPV=0.041973;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,7:13,2:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3182 chr22 10730754 . CTTG C 0 PASS DP=214;GPV=1;SPV=0.030973;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:100,23:57,10:43,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3183 chr22 10737681 . T A 0 PASS DP=330;GPV=1;SPV=0.047801;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:154,21:71,7:83,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3184 chr22 10747004 . G T 0 PASS DP=343;GPV=1;SPV=0.016617;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:149,28:95,11:54,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3185 chr22 11038491 . T C 0 PASS DP=287;GPV=1;SPV=0.015677;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:139,20:75,11:64,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3186 chr22 11039319 . ATT A 0 PASS DP=222;GPV=1;SPV=0.018223;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:93,17:43,11:50,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3187 chr22 11043051 . C T 0 PASS DP=111;GPV=1;SPV=0.021519;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:48,10:27,7:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3188 chr22 11048550 . T A 0 PASS DP=222;GPV=1;SPV=0.001035;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:114,16:52,4:62,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3189 chr22 11048836 . T C 0 PASS DP=172;GPV=1;SPV=0.0070553;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:77,12:30,3:47,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3190 chr22 11050709 . G A 0 PASS DP=225;GPV=1;SPV=0.00091932;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:112,23:68,9:44,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3191 chr22 11056810 . A G 0 PASS DP=292;GPV=1;SPV=4.9242e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:138,30:78,14:60,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3192 chr22 11058156 . A T 0 PASS DP=111;GPV=1;SPV=0.0096308;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:55,12:21,5:34,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3193 chr22 11284131 . A C 0 PASS DP=42;GPV=1;SPV=0.034481;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3194 chr22 11284214 . C T 0 PASS DP=69;GPV=1;SPV=5.846e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:11,4:7,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3195 chr22 11315794 . G A 0 PASS DP=265;GPV=1;SPV=0.017106;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:119,26:67,13:52,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3196 chr22 11617036 . C A 0 PASS DP=77;GPV=1;SPV=0.000638;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:15,6:20,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3197 chr22 11617229 . T C 0 PASS DP=96;GPV=1;SPV=0.043506;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:41,14:24,3:17,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3198 chr22 11691473 . A G 0 PASS DP=83;GPV=1;SPV=0.026654;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:19,2:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3199 chr22 11789412 . A C 0 PASS DP=236;GPV=1;SPV=0.02995;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:109,17:50,8:59,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3200 chr22 11831534 . T C 0 PASS DP=130;GPV=1;SPV=0.038796;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:59,9:13,2:46,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3201 chr22 11834556 . T C 0 PASS DP=345;GPV=1;SPV=0.029507;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:159,25:63,3:96,22
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3202 chr22 11850005 . G A 0 PASS DP=69;GPV=1;SPV=0.0068281;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:13,6:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3203 chr22 11855791 . A G 0 PASS DP=440;GPV=1;SPV=0.045175;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:252:213,39:85,4:128,35
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3204 chr22 11859488 . C T 0 PASS DP=191;GPV=1;SPV=0.030041;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:86,13:36,2:50,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3205 chr22 11865928 . G A 0 PASS DP=232;GPV=1;SPV=0.0098825;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:113,15:71,12:42,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3206 chr22 11866660 . T C 0 PASS DP=377;GPV=1;SPV=0.015796;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:192:159,33:89,12:70,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3207 chr22 11869587 . T C 0 PASS DP=309;GPV=1;SPV=0.029408;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:147,17:65,10:82,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3208 chr22 11869839 . G A 0 PASS DP=182;GPV=1;SPV=0.047269;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:92,15:23,4:69,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3209 chr22 11890253 . A G 0 PASS DP=52;GPV=1;SPV=0.032708;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3210 chr22 11890558 . T A 0 PASS DP=151;GPV=1;SPV=0.046989;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:67,12:45,10:22,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3211 chr22 11890603 . A T 0 PASS DP=104;GPV=1;SPV=0.0044489;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:27,5:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3212 chr22 11892130 . C T 0 PASS DP=296;GPV=1;SPV=0.016442;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:170:143,27:87,14:56,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3213 chr22 11900144 . T C 0 PASS DP=299;GPV=1;SPV=0.028786;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:137,26:95,10:42,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3214 chr22 11902251 . C A 0 PASS DP=677;GPV=1;SPV=0.022691;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:378:333,45:181,21:152,24
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3215 chr22 11902252 . A T 0 PASS DP=667;GPV=1;SPV=0.015515;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:375:328,47:166,21:162,26
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3216 chr22 11911908 . G T 0 PASS DP=46;GPV=1;SPV=0.066379;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,8:8,6:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3217 chr22 11928081 . A G 0 PASS DP=655;GPV=1;SPV=0.048726;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:375:336,39:183,20:153,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3218 chr22 11936070 . A T 0 PASS DP=418;GPV=1;SPV=0.00059618;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:167,42:88,25:79,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3219 chr22 11942334 . C G 0 PASS DP=347;GPV=1;SPV=0.021383;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:198:165,33:44,21:121,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3220 chr22 11947623 . C A 0 PASS DP=158;GPV=1;SPV=0.0050579;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:85,10:45,3:40,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3221 chr22 11950047 . A G 0 PASS DP=160;GPV=1;SPV=0.044156;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:80,10:40,6:40,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3222 chr22 11950699 . TATAC T 0 PASS DP=108;GPV=1;SPV=0.012602;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:10,2:28,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3223 chr22 11958784 . C A 0 PASS DP=154;GPV=1;SPV=0.0042434;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:64,17:36,10:28,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3224 chr22 12043389 . CT C 0 PASS DP=170;GPV=1;SPV=0.013846;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:77,13:42,6:35,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3225 chr22 12047416 . A G 0 PASS DP=130;GPV=1;SPV=0.038584;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:21,4:31,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3226 chr22 12071725 . T A 0 PASS DP=209;GPV=1;SPV=0.018587;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:110,13:59,10:51,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3227 chr22 12073053 . A G 0 PASS DP=172;GPV=1;SPV=0.04415;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:82,19:39,9:43,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3228 chr22 12078216 . T A 0 PASS DP=178;GPV=1;SPV=0.044888;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:85,19:40,8:45,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3229 chr22 12088780 . CTT C 0 PASS DP=163;GPV=1;SPV=0.0010345;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:61,17:25,12:36,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3230 chr22 12088800 . A T 0 PASS DP=171;GPV=1;SPV=0.0065432;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:73,16:27,10:46,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3231 chr22 12093764 . T C 0 PASS DP=224;GPV=1;SPV=0.0048439;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:92,23:51,11:41,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3232 chr22 12096985 . ATTTG A 0 PASS DP=162;GPV=1;SPV=0.0042836;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:76,18:47,7:29,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3233 chr22 12138075 . A G 0 PASS DP=426;GPV=1;SPV=0.007091;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:231:206,25:101,16:105,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3234 chr22 12156723 . A C 0 PASS DP=127;GPV=1;SPV=0.041292;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:58,9:13,2:45,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3235 chr22 12200447 . C T 0 PASS DP=337;GPV=1;SPV=0.041512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:156,24:63,8:93,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3236 chr22 12208541 . C T 0 PASS DP=179;GPV=1;SPV=0.029756;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:70,17:27,7:43,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3237 chr22 12213734 . G A 0 PASS DP=231;GPV=1;SPV=0.0092587;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:128,21:52,9:76,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3238 chr22 12277008 . G A 0 PASS DP=36;GPV=1;SPV=0.00093163;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,3:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3239 chr22 12284638 . A G 0 PASS DP=230;GPV=1;SPV=0.020841;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:108,19:68,13:40,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3240 chr22 12305907 . A G 0 PASS DP=205;GPV=1;SPV=0.047813;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:100,21:78,18:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3241 chr22 12349893 . T G 0 PASS DP=223;GPV=1;SPV=0.044175;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:118,16:63,5:55,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3242 chr22 12504173 . G A 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3243 chr22 12592601 . G A 0 PASS DP=183;GPV=1;SPV=0.0059851;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:92,19:40,4:52,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3244 chr22 12617705 . C A 0 PASS DP=150;GPV=1;SPV=0.034319;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:69,14:32,8:37,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3245 chr22 12697095 . G C 0 PASS DP=205;GPV=1;SPV=0.014095;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:79,18:40,10:39,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3246 chr22 12700082 . A T 0 PASS DP=183;GPV=1;SPV=0.025064;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:91,20:55,11:36,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3247 chr22 12721756 . T C 0 PASS DP=220;GPV=1;SPV=0.0062308;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:94,27:37,17:57,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3248 chr22 12723439 . C T 0 PASS DP=95;GPV=1;SPV=0.044668;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:14,5:28,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3249 chr22 12789806 . C CAA 0 PASS DP=28;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3250 chr22 12807011 . G C 0 PASS DP=141;GPV=1;SPV=0.022184;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:74,14:40,5:34,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3251 chr22 12810751 . G A 0 PASS DP=92;GPV=1;SPV=0.0027702;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:45,11:31,4:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3252 chr22 12810923 . G GTAAC 0 PASS DP=70;GPV=1;SPV=0.15236;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,5:29,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3253 chr22 12817696 . C A 0 PASS DP=113;GPV=1;SPV=0.040334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:22,5:30,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3254 chr22 12869391 . T C 0 PASS DP=402;GPV=1;SPV=0.0010087;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:219:193,26:72,9:121,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3255 chr22 12877926 . A T 0 PASS DP=281;GPV=1;SPV=0.037111;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:136,24:77,12:59,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3256 chr22 12883528 . C T 0 PASS DP=68;GPV=1;SPV=0.012287;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:22,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3257 chr22 12895438 . G C 0 PASS DP=279;GPV=1;SPV=0.017536;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:134,27:85,13:49,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3258 chr22 12897751 . C A 0 PASS DP=285;GPV=1;SPV=0.00022687;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:127,32:82,21:45,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3259 chr22 12901664 . C A 0 PASS DP=223;GPV=1;SPV=0.011487;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:106,22:47,11:59,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3260 chr22 12903574 . T C 0 PASS DP=74;GPV=1;SPV=0.0063397;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:33,4:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3261 chr22 12903902 . C A 0 PASS DP=328;GPV=1;SPV=0.0083562;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:161,36:75,24:86,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3262 chr22 15412353 . G A 0 PASS DP=89;GPV=1;SPV=0.03885;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:22,9:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3263 chr22 15548844 . C T 0 PASS DP=95;GPV=1;SPV=0.028064;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:34,8:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3264 chr22 15659861 . T TA 0 PASS DP=58;GPV=1;SPV=0.036709;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:0,2:22,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3265 chr22 15680325 . T C 0 PASS DP=34;GPV=1;SPV=0.019548;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:1,1:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3266 chr22 15708540 . A G 0 PASS DP=29;GPV=1;SPV=0.036782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3267 chr22 15731112 . G C 0 PASS DP=127;GPV=1;SPV=0.038977;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:61,13:40,11:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3268 chr22 15794011 . TA T 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3269 chr22 15797061 . C T 0 PASS DP=67;GPV=1;SPV=0.068133;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:14,3:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3270 chr22 15837366 . T C 0 PASS DP=46;GPV=1;SPV=0.14691;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3271 chr22 15855606 . A G 0 PASS DP=37;GPV=1;SPV=0.19154;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3272 chr22 16421475 . T G 0 PASS DP=93;GPV=1;SPV=0.010599;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:16,9:23,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3273 chr22 16477420 . TAA T 0 PASS DP=98;GPV=1;SPV=0.0076984;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:34,16:10,12:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3274 chr22 16883577 . G C 0 PASS DP=69;GPV=1;SPV=0.066681;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:17,4:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3275 chr22 17886804 . CAA C 0 PASS DP=34;GPV=1;SPV=0.0040786;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:6,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3276 chr22 18084239 . T C 0 PASS DP=32;GPV=1;SPV=0.045694;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:8,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3277 chr22 18197351 . G C 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3278 chr22 18204790 . T TATATA 0 PASS DP=60;GPV=1;SPV=0.019827;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:16,6:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3279 chr22 18204837 . CATATATT C 0 PASS DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3280 chr22 18394806 . G T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3281 chr22 18508963 . CTTT C 0 PASS DP=82;GPV=1;SPV=0.040005;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,10:22,9:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3282 chr22 18817078 . G A 0 PASS DP=74;GPV=1;SPV=0.1063;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:20,3:23,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3283 chr22 18850435 . C T 0 PASS DP=171;GPV=1;SPV=0.0015486;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:71,22:38,18:33,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3284 chr22 18864613 . C T 0 PASS DP=61;GPV=1;SPV=0.063369;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:18,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3285 chr22 18945973 . T G 0 PASS DP=91;GPV=1;SPV=0.020498;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:19,2:16,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3286 chr22 19761611 . G C 0 PASS DP=84;GPV=1;SPV=0.0020111;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:17,6:22,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3287 chr22 20336043 . TA T 0 PASS DP=67;GPV=1;SPV=0.045135;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:13,2:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3288 chr22 20695805 . A G 0 PASS DP=75;GPV=1;SPV=0.04045;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:14,4:25,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3289 chr22 21085828 . C T 0 PASS DP=38;GPV=1;SPV=0.039018;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,5:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3290 chr22 21178758 . C G 0 PASS DP=113;GPV=1;SPV=0.019424;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:46,14:19,5:27,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3291 chr22 21184688 . G T 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3292 chr22 21218520 . G T 0 PASS DP=123;GPV=1;SPV=0.010965;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:59,7:36,6:23,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3293 chr22 21223209 . C CT 0 PASS DP=48;GPV=1;SPV=0.045809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:4,5:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3294 chr22 21224952 . G A 0 PASS DP=164;GPV=1;SPV=0.015733;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:73,15:37,9:36,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3295 chr22 21256883 . C T 0 PASS DP=141;GPV=1;SPV=0.022731;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:56,16:31,6:25,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3296 chr22 21306870 . G T 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3297 chr22 22393137 . GA G 0 PASS DP=54;GPV=1;SPV=0.17909;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,5:9,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3298 chr22 22485355 . C T 0 PASS DP=58;GPV=1;SPV=0.0012565;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:11,5:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3299 chr22 22501019 . CA C 0 PASS DP=36;GPV=1;SPV=0.011299;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3300 chr22 23953122 . A G 0 PASS DP=73;GPV=1;SPV=0.020062;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:10,5:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3301 chr22 24251077 . A C 0 PASS DP=57;GPV=1;SPV=0.077531;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:10,4:20,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3302 chr22 24611773 . TTG T 0 PASS DP=31;GPV=1;SPV=0.0081121;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3303 chr22 24647131 . G C 0 PASS DP=87;GPV=1;SPV=0.026665;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:14,6:25,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3304 chr22 24649431 . G T 0 PASS DP=79;GPV=1;SPV=0.047266;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,12:15,5:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3305 chr22 25499786 . TCC T 0 PASS DP=18;GPV=1;SPV=0.060606;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,3:2,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3306 chr22 25867619 . A ATTTCTTTC 0 PASS DP=43;GPV=1;SPV=0.013499;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:4,5:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3307 chr22 25913947 . G T 0 PASS DP=75;GPV=1;SPV=0.0021771;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:12,8:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3308 chr22 26116686 . A T 0 PASS DP=70;GPV=1;SPV=0.064244;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:13,2:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3309 chr22 26316871 . GGAAA G 0 PASS DP=49;GPV=1;SPV=0.012566;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:14,4:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3310 chr22 26371066 . A C 0 PASS DP=59;GPV=1;SPV=0.00070453;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:3,3:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3311 chr22 26661959 . TATAC T 0 PASS DP=29;GPV=1;SPV=0.31818;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3312 chr22 26720774 . G GAA 0 PASS DP=34;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,7:6,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3313 chr22 27053565 . CTCTATATATA C 0 PASS DP=19;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3314 chr22 28243174 . CAAAAAAAAAAAAAAAAAAA C 0 PASS DP=34;GPV=1;SPV=0.0055997;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,9:4,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3315 chr22 29412875 . C T 0 PASS DP=55;GPV=1;SPV=0.00051119;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,20:7,10:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3316 chr22 29704228 . C T 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3317 chr22 33559379 . G A 0 PASS DP=70;GPV=1;SPV=0.0081203;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3318 chr22 33597278 . GAA G 0 PASS DP=41;GPV=1;SPV=0.0019281;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:10,9:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3319 chr22 34151456 . C CAAA 0 PASS DP=30;GPV=1;SPV=0.012882;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:8,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3320 chr22 34300459 . C CTTTG 0 PASS DP=48;GPV=1;SPV=0.029051;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:5,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3321 chr22 35013180 . T TA 0 PASS DP=24;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:2,1:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3322 chr22 35117748 . C T 0 PASS DP=46;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:7,1:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3323 chr22 35709064 . G C 0 PASS DP=67;GPV=1;SPV=0.0012095;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:15,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3324 chr22 36214791 . CTG C 0 PASS DP=35;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,7:4,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3325 chr22 36227315 . CAAAAA C 0 PASS DP=46;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:10,13:6,11:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3326 chr22 37079017 . G GAA 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:20,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3327 chr22 39050030 . C G 0 PASS DP=50;GPV=1;SPV=0.041061;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,2:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3328 chr22 40149679 . CA C 0 PASS DP=34;GPV=1;SPV=0.0046348;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3329 chr22 40722477 . C CA 0 PASS DP=36;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,8:11,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3330 chr22 41312439 . G A 0 PASS DP=49;GPV=1;SPV=0.091143;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,6:10,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3331 chr22 42024930 . A G 0 PASS DP=68;GPV=1;SPV=0.0003718;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:15,6:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3332 chr22 42055525 . G T 0 PASS DP=82;GPV=1;SPV=5.3881e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,22:11,9:15,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3333 chr22 42424414 . C CA 0 PASS DP=48;GPV=1;SPV=0.020223;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,11:7,8:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3334 chr22 43032297 . C CT 0 PASS DP=27;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:8,1:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3335 chr22 43417447 . C CT 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:2,4:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3336 chr22 43705251 . G C 0 PASS DP=64;GPV=1;SPV=0.02165;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:14,5:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3337 chr22 43863195 . A C 0 PASS DP=37;GPV=1;SPV=0.0056305;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,5:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3338 chr22 44347793 . G T 0 PASS DP=87;GPV=1;SPV=0.00023745;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:38,15:18,3:20,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3339 chr22 44408281 . G A 0 PASS DP=68;GPV=1;SPV=0.0029154;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:14,7:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3340 chr22 44637661 . A G 0 PASS DP=86;GPV=1;SPV=8.388e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:16,2:16,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3341 chr22 44854024 . CAAAAAAAA C 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3342 chr22 44940388 . C A 0 PASS DP=72;GPV=1;SPV=0.024567;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:14,1:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3343 chr22 45028914 . GGTTTTGCTCCCTCTACCTC G 0 PASS DP=54;GPV=1;SPV=0.008813;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,3:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3344 chr22 45031952 . GTCAGGCATTCTAATGGAATTCAGGTATTCTAATGGAT G 0 PASS DP=45;GPV=1;SPV=0.11126;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:17,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3345 chr22 46224970 . CT C 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:18,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3346 chr22 46941418 . A AATAT 0 PASS DP=57;GPV=1;SPV=0.041497;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,8:7,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3347 chr22 48729291 . A T 0 PASS DP=36;GPV=1;SPV=0.053977;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3348 chr22 49017619 . T C 0 PASS DP=60;GPV=1;SPV=0.038146;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:17,7:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3349 chr22 49017662 . T TC 0 PASS DP=59;GPV=1;SPV=0.024998;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:12,11:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3350 chr22 49031662 . C T 0 PASS DP=59;GPV=1;SPV=0.00070453;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:14,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3351 chr22 49149250 . G A 0 PASS DP=43;GPV=1;SPV=0.025733;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:4,7:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3352 chr22 49700961 . C CT 0 PASS DP=63;GPV=1;SPV=0.0099688;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:20,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3353 chr3 811946 . G GCACCA 0 PASS DP=38;GPV=1;SPV=0.039018;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,5:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3354 chr3 2658965 . GACAC G 0 PASS DP=42;GPV=1;SPV=0.045366;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:13,8:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3355 chr3 2677449 . T TAGAG 0 PASS DP=40;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3356 chr3 2937137 . T C 0 PASS DP=69;GPV=1;SPV=3.2852e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:12,9:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3357 chr3 3282501 . C T 0 PASS DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:1,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3358 chr3 3284839 . T TTTCTTCTTCTTC 0 PASS DP=43;GPV=1;SPV=0.053471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3359 chr3 3763961 . GT G 0 PASS DP=37;GPV=1;SPV=0.0017181;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,10:1,7:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3360 chr3 3790537 . A G 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3361 chr3 4255552 . CAAG C 0 PASS DP=44;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,5:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3362 chr3 5827030 . T A 0 PASS DP=73;GPV=1;SPV=0.0030859;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:14,5:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3363 chr3 6338735 . C T 0 PASS DP=60;GPV=1;SPV=0.026658;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:17,6:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3364 chr3 6802586 . C CT 0 PASS DP=27;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:2,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3365 chr3 7939348 . C G 0 PASS DP=46;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,5:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3366 chr3 8149448 . A C 0 PASS DP=35;GPV=1;SPV=0.16484;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3367 chr3 9218606 . T A 0 PASS DP=61;GPV=1;SPV=0.001437;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3368 chr3 9323802 . C T 0 PASS DP=62;GPV=1;SPV=0.02826;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:15,5:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3369 chr3 10410412 . C G 0 PASS DP=73;GPV=1;SPV=0.00021271;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:15,7:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3370 chr3 12108899 . G A 0 PASS DP=55;GPV=1;SPV=0.0043761;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:8,3:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3371 chr3 13009209 . G T 0 PASS DP=52;GPV=1;SPV=0.015217;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:11,3:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3372 chr3 15272630 . CAT C 0 PASS DP=54;GPV=1;SPV=0.049315;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:16,3:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3373 chr3 16761247 . T TTC 0 PASS DP=38;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3374 chr3 16761248 . C T 0 PASS DP=22;GPV=1;SPV=0.026224;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:1,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3375 chr3 18084532 . T A 0 PASS DP=25;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:4,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3376 chr3 18097749 . CTCA C 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3377 chr3 18097755 . CTGA C 0 PASS DP=46;GPV=1;SPV=0.12547;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3378 chr3 18097762 . A T 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3379 chr3 18097763 . T C 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3380 chr3 18097765 . T TA 0 PASS DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3381 chr3 18362860 . C CAAAAA 0 PASS DP=25;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3382 chr3 19434174 . C G 0 PASS DP=58;GPV=1;SPV=0.0062647;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:11,5:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3383 chr3 19562991 . AACACAC A 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3384 chr3 20061990 . A T 0 PASS DP=41;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3385 chr3 21229506 . A T 0 PASS DP=60;GPV=1;SPV=0.00059631;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:9,3:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3386 chr3 21681698 . G GA 0 PASS DP=29;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3387 chr3 21838694 . A T 0 PASS DP=59;GPV=1;SPV=0.00088019;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:15,6:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3388 chr3 21881627 . A G 0 PASS DP=53;GPV=1;SPV=4.5681e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,19:7,12:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3389 chr3 22697698 . G GAAAAGAAA 0 PASS DP=16;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,3:1,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3390 chr3 23102581 . C G 0 PASS DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:8,5:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3391 chr3 23420498 . G T 0 PASS DP=59;GPV=1;SPV=7.6729e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:12,7:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3392 chr3 23579384 . CA C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3393 chr3 23716050 . C T 0 PASS DP=33;GPV=1;SPV=0.0029924;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:5,5:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3394 chr3 23883904 . C CAA 0 PASS DP=29;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:9,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3395 chr3 23950902 . CTT C 0 PASS DP=31;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,3:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3396 chr3 24375396 . G T 0 PASS DP=60;GPV=1;SPV=0.067038;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,5:10,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3397 chr3 26821412 . G T 0 PASS DP=55;GPV=1;SPV=0.021052;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:9,3:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3398 chr3 27282571 . T TTATATATA 0 PASS DP=51;GPV=1;SPV=0.10815;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:16,4:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3399 chr3 28563427 . A G 0 PASS DP=36;GPV=1;SPV=0.026091;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:7,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3400 chr3 29109615 . C T 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:4,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3401 chr3 29162145 . C CTT 0 PASS DP=41;GPV=1;SPV=0.016632;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:9,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3402 chr3 29281114 . G GT 0 PASS DP=28;GPV=1;SPV=0.008413;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,11:3,2:1,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3403 chr3 30297039 . G GCACACA 0 PASS DP=36;GPV=1;SPV=0.020174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:11,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3404 chr3 31489183 . T A 0 PASS DP=40;GPV=1;SPV=0.077118;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:18,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3405 chr3 31738855 . T G 0 PASS DP=60;GPV=1;SPV=0.0033714;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:15,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3406 chr3 31856069 . T TAC 0 PASS DP=51;GPV=1;SPV=0.025986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,10:7,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3407 chr3 33166012 . C CAA 0 PASS DP=43;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,14:5,12:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3408 chr3 33433365 . TA T 0 PASS DP=44;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:8,12:4,6:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3409 chr3 33433367 . A T 0 PASS DP=34;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,10:3,5:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3410 chr3 33715847 . TAA T 0 PASS DP=27;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:4,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3411 chr3 33852925 . C CTT 0 PASS DP=30;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,8:2,6:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3412 chr3 34676329 . A ATTGCACACTTGCAAATACCAGCAAGTGTGGTAT 0 PASS DP=51;GPV=1;SPV=0.17768;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3413 chr3 35057370 . T C 0 PASS DP=65;GPV=1;SPV=6.1031e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,8:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3414 chr3 35671582 . T A 0 PASS DP=44;GPV=1;SPV=0.0090318;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:6,1:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3415 chr3 36300868 . A ATACG 0 PASS DP=31;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3416 chr3 36533475 . GTTT G 0 PASS DP=32;GPV=1;SPV=0.046664;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,7:6,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3417 chr3 38621506 . T C 0 PASS DP=59;GPV=1;SPV=0.0056191;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:16,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3418 chr3 39571649 . C T 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3419 chr3 40426107 . C CT 0 PASS DP=31;GPV=1;SPV=0.0043505;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3420 chr3 42416008 . C T 0 PASS DP=28;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,3:3,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3421 chr3 43903722 . C CA 0 PASS DP=38;GPV=1;SPV=0.01463;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3422 chr3 44126691 . G C 0 PASS DP=59;GPV=1;SPV=0.00014161;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:11,10:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3423 chr3 45068384 . C T 0 PASS DP=62;GPV=1;SPV=0.00057944;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:14,7:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3424 chr3 45415809 . T C 0 PASS DP=36;GPV=1;SPV=0.0063539;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,3:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3425 chr3 46207649 . T A 0 PASS DP=53;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3426 chr3 46488434 . G C 0 PASS DP=50;GPV=1;SPV=0.015626;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,1:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3427 chr3 46759472 . G C 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3428 chr3 47241799 . G GTA 0 PASS DP=33;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,5:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3429 chr3 47897378 . C G 0 PASS DP=64;GPV=1;SPV=0.00061829;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:11,4:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3430 chr3 48509583 . CA C 0 PASS DP=38;GPV=1;SPV=0.02835;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3431 chr3 48554407 . C T 0 PASS DP=74;GPV=1;SPV=6.1955e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:21,10:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3432 chr3 48665989 . CT C 0 PASS DP=29;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3433 chr3 49295716 . A G 0 PASS DP=51;GPV=1;SPV=0.12591;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:18,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3434 chr3 49849845 . T C 0 PASS DP=23;GPV=1;SPV=0.035523;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:1,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3435 chr3 49881334 . C A 0 PASS DP=79;GPV=1;SPV=0.00090214;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:17,3:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3436 chr3 50850218 . G A 0 PASS DP=48;GPV=1;SPV=0.0018631;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3437 chr3 50948033 . T C 0 PASS DP=37;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:2,7:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3438 chr3 51193800 . T TA 0 PASS DP=52;GPV=1;SPV=0.1713;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:18,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3439 chr3 51249008 . C A 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3440 chr3 52283819 . TAA T 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:4,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3441 chr3 54141061 . C CTGTGTGTGTGTGTGTG 0 PASS DP=23;GPV=1;SPV=0.013369;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,6:0,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3442 chr3 54910793 . A C 0 PASS DP=56;GPV=1;SPV=0.013909;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3443 chr3 55549477 . C CT 0 PASS DP=21;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,6:0,2:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3444 chr3 55842076 . G C 0 PASS DP=69;GPV=1;SPV=0.028886;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:14,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3445 chr3 56032975 . A G 0 PASS DP=48;GPV=1;SPV=0.038416;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3446 chr3 56906975 . A ATT 0 PASS DP=33;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:8,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3447 chr3 58033635 . C T 0 PASS DP=89;GPV=1;SPV=0.0039417;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:18,4:23,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3448 chr3 58328961 . A G 0 PASS DP=56;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:1,2:0,0:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3449 chr3 59215302 . ATATAT A 0 PASS DP=42;GPV=1;SPV=0.094902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3450 chr3 59797192 . T A 0 PASS DP=61;GPV=1;SPV=0.0054287;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:18,6:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3451 chr3 60038012 . C T 0 PASS DP=67;GPV=1;SPV=0.0074978;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:19,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3452 chr3 60614820 . G T 0 PASS DP=25;GPV=1;SPV=0.12913;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:6,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3453 chr3 61600173 . AAT A 0 PASS DP=36;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,5:2,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3454 chr3 65122609 . G A 0 PASS DP=45;GPV=1;SPV=0.00064998;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,19:5,9:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3455 chr3 67947115 . T TTTTATTTATTTATTTATTTATTTA 0 PASS DP=38;GPV=1;SPV=0.077195;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:10,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3456 chr3 68262307 . GTATATATATATATATATA G 0 PASS DP=18;GPV=1;SPV=0.29371;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3457 chr3 68461282 . A AAAAC 0 PASS DP=32;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3458 chr3 69225519 . C CA 0 PASS DP=32;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,11:6,9:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3459 chr3 69242478 . ATTTTTTTTTTTT A 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3460 chr3 69418822 . A ATGTG 0 PASS DP=39;GPV=1;SPV=0.029963;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:5,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3461 chr3 71937988 . C CTGTG 0 PASS DP=56;GPV=1;SPV=0.015417;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,5:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3462 chr3 72633690 . G T 0 PASS DP=58;GPV=1;SPV=0.0034744;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:17,6:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3463 chr3 73347437 . T C 0 PASS DP=40;GPV=1;SPV=0.16358;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3464 chr3 73534019 . C A 0 PASS DP=74;GPV=1;SPV=0.0064143;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:19,5:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3465 chr3 74269048 . G GA 0 PASS DP=44;GPV=1;SPV=0.0043101;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:9,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3466 chr3 75096062 . C T 0 PASS DP=35;GPV=1;SPV=0.040085;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3467 chr3 75643476 . C T 0 PASS DP=142;GPV=1;SPV=0.046603;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:61,16:36,8:25,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3468 chr3 75785855 . G GA 0 PASS DP=163;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:76,19:36,10:40,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3469 chr3 75811514 . G A 0 PASS DP=138;GPV=1;SPV=0.037707;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:72,12:30,5:42,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3470 chr3 76425510 . G C 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3471 chr3 76719798 . C T 0 PASS DP=67;GPV=1;SPV=0.020851;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:10,4:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3472 chr3 76811818 . CTTCCTTCCTTCCTTCCTTCT C 0 PASS DP=37;GPV=1;SPV=0.016673;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3473 chr3 76834013 . C T 0 PASS DP=43;GPV=1;SPV=0.036896;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,10:2,3:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3474 chr3 77077386 . C T 0 PASS DP=67;GPV=1;SPV=0.0004715;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,5:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3475 chr3 77323024 . ATATAT A 0 PASS DP=76;GPV=1;SPV=0.038499;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,8:19,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3476 chr3 78310768 . GAAGA G 0 PASS DP=43;GPV=1;SPV=0.014912;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,5:6,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3477 chr3 78388527 . C CATCTGCCTGTTACCCAGTTCCAAA 0 PASS DP=42;GPV=1;SPV=0.0090305;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:2,2:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3478 chr3 78407100 . C CAA 0 PASS DP=44;GPV=1;SPV=0.054402;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,7:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3479 chr3 78711440 . T C 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3480 chr3 79221172 . G A 0 PASS DP=69;GPV=1;SPV=0.014256;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:17,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3481 chr3 79411983 . G T 0 PASS DP=53;GPV=1;SPV=0.070174;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,3:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3482 chr3 80015600 . C A 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:2,10:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3483 chr3 80976113 . A AT 0 PASS DP=51;GPV=1;SPV=0.03148;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:8,2:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3484 chr3 80976130 . A AT 0 PASS DP=51;GPV=1;SPV=0.020128;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:6,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3485 chr3 83176263 . T G 0 PASS DP=68;GPV=1;SPV=0.0003718;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:12,8:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3486 chr3 86335842 . TTTTA T 0 PASS DP=64;GPV=1;SPV=0.024474;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:7,3:21,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3487 chr3 86995549 . A T 0 PASS DP=20;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:4,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3488 chr3 86995551 . T TAC 0 PASS DP=19;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,3:2,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3489 chr3 87249132 . C G 0 PASS DP=65;GPV=1;SPV=0.0027508;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:18,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3490 chr3 88009796 . CA C 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:9,6:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3491 chr3 88324586 . T C 0 PASS DP=63;GPV=1;SPV=0.0016295;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:13,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3492 chr3 90140539 . ATT A 0 PASS DP=21;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3493 chr3 90792691 . T C 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:0,1:24,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3494 chr3 90793168 . G A 0 PASS DP=47;GPV=1;SPV=0.044239;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:19,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3495 chr3 90794556 . G A 0 PASS DP=172;GPV=1;SPV=0.03166;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:74,12:39,9:35,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3496 chr3 90795159 . G C 0 PASS DP=145;GPV=1;SPV=0.028927;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:70,8:62,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3497 chr3 90802407 . G T 0 PASS DP=41;GPV=1;SPV=0.070897;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:6,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3498 chr3 90806554 . C A 0 PASS DP=161;GPV=1;SPV=0.014168;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:80,13:48,11:32,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3499 chr3 90807066 . G A 0 PASS DP=61;GPV=1;SPV=0.11288;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:0,0:32,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3500 chr3 90819164 . A G 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3501 chr3 90868586 . C G 0 PASS DP=445;GPV=1;SPV=0.018445;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:186,34:130,24:56,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3502 chr3 90869777 . A T 0 PASS DP=78;GPV=1;SPV=0.0071078;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:2,9:26,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3503 chr3 90889577 . C T 0 PASS DP=147;GPV=1;SPV=0.018335;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:65,20:12,9:53,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3504 chr3 90900435 . G A 0 PASS DP=170;GPV=1;SPV=0.044262;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:81,9:15,2:66,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3505 chr3 90904126 . A T 0 PASS DP=62;GPV=1;SPV=0.026131;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:4,2:25,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3506 chr3 90939861 . C G 0 PASS DP=72;GPV=1;SPV=0.017899;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:24,7:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3507 chr3 90948616 . G A 0 PASS DP=68;GPV=1;SPV=0.044393;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:6,2:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3508 chr3 90988846 . C T 0 PASS DP=758;GPV=1;SPV=0.02669;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:431:385,46:385,45:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3509 chr3 90999996 . A T 0 PASS DP=99;GPV=1;SPV=0.046078;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:15,3:28,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3510 chr3 91019218 . C G 0 PASS DP=78;GPV=1;SPV=0.043528;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:30,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3511 chr3 91063898 . C G 0 PASS DP=24;GPV=1;SPV=0.012749;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3512 chr3 91082603 . GT G 0 PASS DP=112;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:54,11:24,9:30,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3513 chr3 91082660 . C G 0 PASS DP=92;GPV=1;SPV=0.0061213;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:15,7:30,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3514 chr3 91128600 . G C 0 PASS DP=60;GPV=1;SPV=0.0031056;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:1,8:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3515 chr3 91141548 . A C 0 PASS DP=155;GPV=1;SPV=0.03166;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:85,10:12,4:73,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3516 chr3 91179559 . A G 0 PASS DP=51;GPV=1;SPV=0.26429;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:31,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3517 chr3 91187298 . A T 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3518 chr3 91222727 . C T 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:1,0:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3519 chr3 91229920 . G T 0 PASS DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:14,3:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3520 chr3 94740829 . G T 0 PASS DP=60;GPV=1;SPV=0.00085567;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,2:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3521 chr3 95832587 . T C 0 PASS DP=25;GPV=1;SPV=0.0074891;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3522 chr3 96005104 . A T 0 PASS DP=64;GPV=1;SPV=0.046272;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,8:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3523 chr3 96317750 . G GTTT 0 PASS DP=39;GPV=1;SPV=0.016795;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:7,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3524 chr3 97319442 . C T 0 PASS DP=60;GPV=1;SPV=0.00059631;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:12,5:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3525 chr3 98538904 . CTT C 0 PASS DP=24;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3526 chr3 98838390 . G A 0 PASS DP=41;GPV=1;SPV=0.021576;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:5,4:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3527 chr3 99691705 . A T 0 PASS DP=29;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,12:4,6:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3528 chr3 103044860 . T C 0 PASS DP=62;GPV=1;SPV=0.0048152;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:7,2:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3529 chr3 105280352 . C T 0 PASS DP=44;GPV=1;SPV=0.06057;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3530 chr3 105470134 . C T 0 PASS DP=53;GPV=1;SPV=0.020691;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:15,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3531 chr3 106707358 . A AT 0 PASS DP=37;GPV=1;SPV=0.050426;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:5,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3532 chr3 106707369 . T TA 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3533 chr3 106875480 . A C 0 PASS DP=67;GPV=1;SPV=0.014512;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:18,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3534 chr3 108720876 . C A 0 PASS DP=60;GPV=1;SPV=0.00089447;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:12,6:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3535 chr3 109317351 . A C 0 PASS DP=37;GPV=1;SPV=0.22636;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3536 chr3 111807946 . GT G 0 PASS DP=41;GPV=1;SPV=0.013238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:9,4:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3537 chr3 114544406 . CTTCT C 0 PASS DP=27;GPV=1;SPV=0.079329;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:3,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3538 chr3 116618234 . C T 0 PASS DP=53;GPV=1;SPV=0.0015408;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,6:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3539 chr3 116760286 . CAA C 0 PASS DP=26;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:3,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3540 chr3 117050840 . G A 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3541 chr3 117634731 . C CTT 0 PASS DP=35;GPV=1;SPV=0.016617;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:6,5:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3542 chr3 118647946 . A G 0 PASS DP=63;GPV=1;SPV=0.020447;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:15,12:4,7:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3543 chr3 120151071 . ATT A 0 PASS DP=51;GPV=1;SPV=0.078283;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:9,4:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3544 chr3 121253810 . C T 0 PASS DP=20;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3545 chr3 121764195 . A AACACACACAC 0 PASS DP=52;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,10:13,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3546 chr3 122009324 . A AACACACACACAC 0 PASS DP=30;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:0,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3547 chr3 122145747 . G C 0 PASS DP=55;GPV=1;SPV=0.00044867;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,6:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3548 chr3 124044897 . C CT 0 PASS DP=43;GPV=1;SPV=0.011574;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,9:3,2:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3549 chr3 124495729 . T TAAA 0 PASS DP=26;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:0,4:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3550 chr3 124668043 . G GAC 0 PASS DP=37;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,11:3,4:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3551 chr3 125813770 . A T 0 PASS DP=62;GPV=1;SPV=0.00041251;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:13,7:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3552 chr3 126336272 . A C 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3553 chr3 127184619 . C A 0 PASS DP=63;GPV=1;SPV=0.0089538;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:16,4:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3554 chr3 127947372 . G A 0 PASS DP=55;GPV=1;SPV=0.0058348;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:8,5:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3555 chr3 131586850 . G T 0 PASS DP=77;GPV=1;SPV=0.00065864;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:36,17:20,5:16,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3556 chr3 133003397 . A ATG 0 PASS DP=40;GPV=1;SPV=0.033935;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:9,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3557 chr3 133044974 . T TTC 0 PASS DP=61;GPV=1;SPV=0.029233;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:15,1:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3558 chr3 133091223 . C A 0 PASS DP=62;GPV=1;SPV=0.00041251;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,7:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3559 chr3 133158465 . TA T 0 PASS DP=36;GPV=1;SPV=0.0079864;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:9,19:6,13:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3560 chr3 133425913 . G GGGCAAGGGAA 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3561 chr3 134321577 . CT C 0 PASS DP=27;GPV=1;SPV=0.0057971;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3562 chr3 134401573 . C T 0 PASS DP=60;GPV=1;SPV=0.18741;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:17,3:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3563 chr3 134858009 . C A 0 PASS DP=82;GPV=1;SPV=0.00021937;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:16,6:18,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3564 chr3 135253682 . A C 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,2:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3565 chr3 135390016 . C CA 0 PASS DP=54;GPV=1;SPV=0.058582;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,6:13,4:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3566 chr3 136439389 . GAC G 0 PASS DP=43;GPV=1;SPV=0.010741;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:14,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3567 chr3 137135157 . G C 0 PASS DP=77;GPV=1;SPV=0.030261;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:43,8:18,2:25,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3568 chr3 140079750 . C CAAAAAAAAAAAA 0 PASS DP=46;GPV=1;SPV=0.14691;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:17,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3569 chr3 140513583 . C CT 0 PASS DP=21;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:2,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3570 chr3 140654957 . G C 0 PASS DP=70;GPV=1;SPV=0.0036574;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:17,5:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3571 chr3 143284404 . A AT 0 PASS DP=56;GPV=1;SPV=0.00073094;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,23:8,10:10,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3572 chr3 144954711 . T TTTTTTTG 0 PASS DP=50;GPV=1;SPV=0.013096;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,11:8,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3573 chr3 144955970 . G C 0 PASS DP=55;GPV=1;SPV=0.0060655;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:8,3:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3574 chr3 147159575 . G GTT 0 PASS DP=35;GPV=1;SPV=0.027219;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:6,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3575 chr3 147859108 . G T 0 PASS DP=70;GPV=1;SPV=0.0010857;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,3:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3576 chr3 148642510 . C CAAA 0 PASS DP=51;GPV=1;SPV=0.040129;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,15:10,13:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3577 chr3 148822292 . CA C 0 PASS DP=52;GPV=1;SPV=0.074323;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:23,7:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3578 chr3 149184023 . TA T 0 PASS DP=20;GPV=1;SPV=0.27273;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3579 chr3 149853455 . GGAGAGAGAGA G 0 PASS DP=37;GPV=1;SPV=0.0061246;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,9:4,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3580 chr3 150028648 . C T 0 PASS DP=54;GPV=1;SPV=0.17909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,5:11,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3581 chr3 150211910 . A T 0 PASS DP=52;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3582 chr3 151031259 . GAT G 0 PASS DP=32;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:14,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3583 chr3 151072525 . C CT 0 PASS DP=43;GPV=1;SPV=0.0073228;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:9,5:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3584 chr3 151547425 . T TAC 0 PASS DP=52;GPV=1;SPV=0.031932;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:9,4:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3585 chr3 151547427 . T C 0 PASS DP=49;GPV=1;SPV=0.031946;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,8:7,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3586 chr3 151850080 . GT G 0 PASS DP=65;GPV=1;SPV=0.00066677;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:11,12:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3587 chr3 152104773 . TAAAAAAAAAAAAAAAAAAAAAAAAAAA T 0 PASS DP=36;GPV=1;SPV=0.021839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,6:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3588 chr3 153009169 . A AAT 0 PASS DP=45;GPV=1;SPV=0.020164;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,10:11,5:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3589 chr3 153520081 . CT C 0 PASS DP=47;GPV=1;SPV=0.084394;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3590 chr3 154618292 . G GAGAA 0 PASS DP=53;GPV=1;SPV=0.0085378;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,13:9,11:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3591 chr3 158758484 . G A 0 PASS DP=66;GPV=1;SPV=0.0073874;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:13,4:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3592 chr3 158891833 . G GTGTGTATGTA 0 PASS DP=22;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,4:2,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3593 chr3 158923448 . A T 0 PASS DP=86;GPV=1;SPV=0.0021714;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:22,5:21,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3594 chr3 159818570 . G T 0 PASS DP=86;GPV=1;SPV=0.015987;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:22,1:20,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3595 chr3 160906602 . T TAAAGAAAAAAAAGAAAAGA 0 PASS DP=60;GPV=1;SPV=0.046809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,10:10,6:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3596 chr3 161840354 . G T 0 PASS DP=61;GPV=1;SPV=0.02204;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:11,5:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3597 chr3 162199912 . T C 0 PASS DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3598 chr3 162590763 . TATACAC T 0 PASS DP=48;GPV=1;SPV=0.083225;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,1:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3599 chr3 163402299 . GTT G 0 PASS DP=40;GPV=1;SPV=0.17207;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,6:16,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3600 chr3 163502562 . A G 0 PASS DP=68;GPV=1;SPV=0.0090481;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:11,3:22,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3601 chr3 163604681 . A ATAT 0 PASS DP=50;GPV=1;SPV=0.023188;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,14:4,8:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3602 chr3 164207930 . T G 0 PASS DP=42;GPV=1;SPV=0.16752;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3603 chr3 164363535 . C A 0 PASS DP=60;GPV=1;SPV=0.027191;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:9,6:4,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3604 chr3 164386069 . G A 0 PASS DP=60;GPV=1;SPV=0.042571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:14,8:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3605 chr3 164537163 . C T 0 PASS DP=34;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,4:2,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3606 chr3 164604251 . C T 0 PASS DP=77;GPV=1;SPV=0.0052479;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:20,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3607 chr3 165771059 . A T 0 PASS DP=63;GPV=1;SPV=0.066176;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:17,2:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3608 chr3 165883390 . T A 0 PASS DP=64;GPV=1;SPV=5.8703e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:13,7:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3609 chr3 166073224 . C G 0 PASS DP=66;GPV=1;SPV=0.0030133;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:12,7:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3610 chr3 166106743 . CTTTT C 0 PASS DP=31;GPV=1;SPV=0.0018733;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,15:4,11:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3611 chr3 167488145 . A AAC 0 PASS DP=39;GPV=1;SPV=0.0052134;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,12:7,9:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3612 chr3 168370031 . C CA 0 PASS DP=33;GPV=1;SPV=0.033902;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3613 chr3 168578212 . CATTT C 0 PASS DP=60;GPV=1;SPV=0.00014877;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,21:8,10:8,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3614 chr3 168830673 . T A 0 PASS DP=66;GPV=1;SPV=0.12152;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:22,3:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3615 chr3 169378591 . T A 0 PASS DP=40;GPV=1;SPV=0.0041535;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,8:8,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3616 chr3 170140627 . C T 0 PASS DP=42;GPV=1;SPV=0.032608;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:10,6:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3617 chr3 170336573 . TC T 0 PASS DP=43;GPV=1;SPV=0.15679;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:16,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3618 chr3 170382413 . A AT 0 PASS DP=46;GPV=1;SPV=0.001414;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,14:8,8:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3619 chr3 170577624 . CA C 0 PASS DP=36;GPV=1;SPV=0.013014;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3620 chr3 171301124 . A C 0 PASS DP=56;GPV=1;SPV=0.00053399;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:9,9:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3621 chr3 171310223 . G A 0 PASS DP=52;GPV=1;SPV=0.035434;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3622 chr3 171310226 . A ATATGACTCACAG 0 PASS DP=48;GPV=1;SPV=0.041011;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:8,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3623 chr3 171310228 . G T 0 PASS DP=52;GPV=1;SPV=0.042521;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:9,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3624 chr3 172504674 . CT C 0 PASS DP=51;GPV=1;SPV=0.0086143;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:7,9:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3625 chr3 172701449 . C CTTTT 0 PASS DP=35;GPV=1;SPV=0.010683;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3626 chr3 172797018 . C CTGTGTGTGTGTG 0 PASS DP=53;GPV=1;SPV=0.0095255;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,11:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3627 chr3 173392472 . C CA 0 PASS DP=51;GPV=1;SPV=0.016244;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,10:8,9:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3628 chr3 174090019 . C A 0 PASS DP=61;GPV=1;SPV=0.020202;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:13,5:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3629 chr3 174625059 . T C 0 PASS DP=31;GPV=1;SPV=0.091248;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:12,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3630 chr3 174698931 . T TTA 0 PASS DP=42;GPV=1;SPV=0.032608;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:4,4:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3631 chr3 174698967 . G GTATATA 0 PASS DP=41;GPV=1;SPV=0.032529;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:6,4:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3632 chr3 175061728 . A AATATATAT 0 PASS DP=47;GPV=1;SPV=0.0085423;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:10,7:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3633 chr3 175849410 . C CATATAT 0 PASS DP=20;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3634 chr3 176233797 . T C 0 PASS DP=34;GPV=1;SPV=0.0070885;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:7,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3635 chr3 177312931 . CT C 0 PASS DP=28;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:2,8:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3636 chr3 177819193 . C CT 0 PASS DP=37;GPV=1;SPV=0.0074752;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,9:3,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3637 chr3 177939576 . A AAG 0 PASS DP=84;GPV=1;SPV=0.039093;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:28,2:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3638 chr3 178163969 . T TA 0 PASS DP=53;GPV=1;SPV=0.038251;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:15,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3639 chr3 178517187 . CTGTG C 0 PASS DP=56;GPV=1;SPV=0.0023791;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:13,16:7,11:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3640 chr3 178568854 . T TA 0 PASS DP=54;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,4:10,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3641 chr3 178757829 . C A 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3642 chr3 178757830 . C T 0 PASS DP=23;GPV=1;SPV=0.12422;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:9,3:6,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3643 chr3 178838570 . CA C 0 PASS DP=45;GPV=1;SPV=0.034981;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:10,9:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3644 chr3 180248085 . CTTCTT C 0 PASS DP=35;GPV=1;SPV=0.012898;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:6,6:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3645 chr3 180333476 . T C 0 PASS DP=70;GPV=1;SPV=0.041472;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:19,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3646 chr3 180873483 . T G 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:17,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3647 chr3 181121602 . G T 0 PASS DP=76;GPV=1;SPV=0.00022269;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:33,18:12,13:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3648 chr3 181950827 . C G 0 PASS DP=76;GPV=1;SPV=0.11468;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:18,1:27,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3649 chr3 182590903 . T A 0 PASS DP=65;GPV=1;SPV=0.06044;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3650 chr3 183164314 . G GTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.007971;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3651 chr3 183321454 . G A 0 PASS DP=50;GPV=1;SPV=0.22736;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:10,1:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3652 chr3 183519895 . CAA C 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3653 chr3 183622530 . A AAAGG 0 PASS DP=47;GPV=1;SPV=0.2649;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,4:19,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3654 chr3 183957716 . A G 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3655 chr3 184500646 . A G 0 PASS DP=86;GPV=1;SPV=0.0046257;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:17,7:28,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3656 chr3 185875280 . G GTA 0 PASS DP=50;GPV=1;SPV=0.015957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,7:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3657 chr3 185912906 . C CA 0 PASS DP=46;GPV=1;SPV=0.00034897;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,14:10,8:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3658 chr3 186995505 . C CA 0 PASS DP=27;GPV=1;SPV=0.01971;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:8,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3659 chr3 187268547 . AAT A 0 PASS DP=38;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3660 chr3 187573591 . G A 0 PASS DP=79;GPV=1;SPV=0.008152;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:20,6:24,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3661 chr3 188182772 . T C 0 PASS DP=47;GPV=1;SPV=0.046124;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,13:8,11:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3662 chr3 189483916 . G T 0 PASS DP=84;GPV=1;SPV=0.00034436;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:11,7:23,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3663 chr3 189697231 . C CA 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:10,5:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3664 chr3 189942884 . G A 0 PASS DP=71;GPV=1;SPV=0.0030392;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:15,7:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3665 chr3 190489200 . TCTTCCTTCCTTCCTTCCTCTCTTC T 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:2,1:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3666 chr3 191216854 . T C 0 PASS DP=64;GPV=1;SPV=0.017938;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,2:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3667 chr3 191619293 . A G 0 PASS DP=46;GPV=1;SPV=0.040043;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:1,5:1,3:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3668 chr3 192158675 . T TCC 0 PASS DP=18;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,4:0,1:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3669 chr3 193418065 . T G 0 PASS DP=37;GPV=1;SPV=0.0070131;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:5,6:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3670 chr3 194143191 . CAAAA C 0 PASS DP=36;GPV=1;SPV=0.016203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,7:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3671 chr3 194324950 . T C 0 PASS DP=35;GPV=1;SPV=0.22386;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,5:7,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3672 chr3 194526987 . A G 0 PASS DP=39;GPV=1;SPV=0.090728;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:18,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3673 chr3 194846551 . TGAA T 0 PASS DP=71;GPV=1;SPV=0.055365;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:30,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3674 chr3 195067358 . A ACCTC 0 PASS DP=42;GPV=1;SPV=0.0088119;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:5,8:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3675 chr3 195483671 . C T 0 PASS DP=230;GPV=1;SPV=0.0063764;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:128,28:60,12:68,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3676 chr3 195491737 . C A 0 PASS DP=55;GPV=1;SPV=0.067189;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:11,3:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3677 chr3 195502702 . C A 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3678 chr3 195502739 . G C 0 PASS DP=60;GPV=1;SPV=0.095104;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3679 chr3 195661457 . T C 0 PASS DP=46;GPV=1;SPV=0.25076;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:19,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3680 chr3 195667466 . A G 0 PASS DP=44;GPV=1;SPV=0.10935;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3681 chr3 195750391 . AGGCCT A 0 PASS DP=43;GPV=1;SPV=0.0069124;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:9,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3682 chr3 195786809 . A T 0 PASS DP=42;GPV=1;SPV=9.7816e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:7,7:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3683 chr3 195812455 . C CTCAGTG 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3684 chr3 195866336 . G A 0 PASS DP=66;GPV=1;SPV=0.00086166;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:15,8:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3685 chr3 196462980 . T C 0 PASS DP=28;GPV=1;SPV=0.0070913;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:4,3:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3686 chr3 196973207 . T G 0 PASS DP=66;GPV=1;SPV=0.13598;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,6:15,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3687 chr3 197513494 . A C 0 PASS DP=67;GPV=1;SPV=0.045056;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:17,4:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3688 chr3 197617964 . G A 0 PASS DP=80;GPV=1;SPV=0.076398;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:47,6:13,1:34,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3689 chr3 197630964 . G T 0 PASS DP=83;GPV=1;SPV=0.072974;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:25,3:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3690 chr3 198099324 . C A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3691 chr4 1641147 . C T 0 PASS DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3692 chr4 1690259 . T A 0 PASS DP=49;GPV=1;SPV=0.1056;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:16,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3693 chr4 3522099 . C T 0 PASS DP=82;GPV=1;SPV=7.9857e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:14,9:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3694 chr4 4065631 . G T 0 PASS DP=47;GPV=1;SPV=0.0094013;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3695 chr4 4891540 . G GGT 0 PASS DP=45;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,12:4,3:1,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3696 chr4 5762728 . T C 0 PASS DP=23;GPV=1;SPV=0.04958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3697 chr4 6012995 . G A 0 PASS DP=83;GPV=1;SPV=0.0003546;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:19,7:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3698 chr4 7895852 . G GTT 0 PASS DP=27;GPV=1;SPV=0.0058007;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,9:1,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3699 chr4 8919107 . TC T 0 PASS DP=42;GPV=1;SPV=0.071818;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:13,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3700 chr4 9245168 . G C 0 PASS DP=54;GPV=1;SPV=0.14664;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:0,0:30,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3701 chr4 9253009 . T A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3702 chr4 10096558 . CACTACGA C 0 PASS DP=64;GPV=1;SPV=0.0068367;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:9,5:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3703 chr4 10380072 . C T 0 PASS DP=55;GPV=1;SPV=0.04522;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:16,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3704 chr4 10894438 . A ATGTGTGTG 0 PASS DP=35;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:6,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3705 chr4 16303360 . A G 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3706 chr4 17459743 . C A 0 PASS DP=65;GPV=1;SPV=0.0094928;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:12,5:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3707 chr4 18140794 . T C 0 PASS DP=57;GPV=1;SPV=0.00034731;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:6,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3708 chr4 18384018 . A G 0 PASS DP=59;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:36:1,4:1,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3709 chr4 18837294 . C G 0 PASS DP=40;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:2,3:0,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3710 chr4 18851445 . G T 0 PASS DP=58;GPV=1;SPV=0.0030535;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:7,1:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3711 chr4 19416219 . T A 0 PASS DP=76;GPV=1;SPV=0.0076904;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:19,6:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3712 chr4 21534948 . C T 0 PASS DP=59;GPV=1;SPV=0.013492;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:18,5:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3713 chr4 23721457 . T TG 0 PASS DP=30;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,1:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3714 chr4 23859780 . CAAAATAAAATAAAATAAAAT C 0 PASS DP=30;GPV=1;SPV=0.20158;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:5,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3715 chr4 24387746 . AAGAG A 0 PASS DP=36;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:5,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3716 chr4 24416559 . G C 0 PASS DP=72;GPV=1;SPV=0.00073216;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:14,3:17,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3717 chr4 24503955 . A C 0 PASS DP=93;GPV=1;SPV=0.016099;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:16,3:26,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3718 chr4 25612012 . C CA 0 PASS DP=16;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3719 chr4 26028535 . C T 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:1,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3720 chr4 26153944 . T A 0 PASS DP=54;GPV=1;SPV=0.00088132;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3721 chr4 26244403 . ATG A 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:11,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3722 chr4 27930275 . A ATTTTTTT 0 PASS DP=33;GPV=1;SPV=0.018404;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3723 chr4 29338563 . T G 0 PASS DP=68;GPV=1;SPV=0.0020609;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:18,7:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3724 chr4 29990623 . A C 0 PASS DP=49;GPV=1;SPV=0.0049228;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:8,5:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3725 chr4 30265706 . T A 0 PASS DP=68;GPV=1;SPV=0.00014298;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:16,7:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3726 chr4 30545108 . ATT A 0 PASS DP=41;GPV=1;SPV=0.014318;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:11,4:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3727 chr4 30969410 . C T 0 PASS DP=49;GPV=1;SPV=4.5431e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,21:5,10:6,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3728 chr4 32619397 . TTA T 0 PASS DP=58;GPV=1;SPV=0.00064391;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:10,9:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3729 chr4 32868624 . A AT 0 PASS DP=34;GPV=1;SPV=0.009581;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:6,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3730 chr4 32870349 . C T 0 PASS DP=79;GPV=1;SPV=0.0064316;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:18,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3731 chr4 33477438 . C CT 0 PASS DP=67;GPV=1;SPV=0.11157;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,5:12,2:25,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3732 chr4 36484889 . AATATATATTAGTTTATATATATAAT A 0 PASS DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3733 chr4 37667875 . C G 0 PASS DP=48;GPV=1;SPV=0.00037684;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,17:5,7:6,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3734 chr4 37717454 . G GA 0 PASS DP=37;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:0,4:0,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3735 chr4 37846536 . C G 0 PASS DP=75;GPV=1;SPV=0.00041007;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:17,8:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3736 chr4 40440334 . G A 0 PASS DP=56;GPV=1;SPV=0.0051054;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,3:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3737 chr4 40536472 . G T 0 PASS DP=61;GPV=1;SPV=0.008555;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:16,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3738 chr4 41688196 . C A 0 PASS DP=57;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3739 chr4 42269487 . AT A 0 PASS DP=16;GPV=1;SPV=0.060606;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,3:2,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3740 chr4 44068258 . C T 0 PASS DP=68;GPV=1;SPV=0.0050026;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:17,6:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3741 chr4 45463386 . G C 0 PASS DP=61;GPV=1;SPV=0.0007185;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:9,8:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3742 chr4 46482995 . G A 0 PASS DP=53;GPV=1;SPV=0.0010272;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:11,8:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3743 chr4 46880412 . CT C 0 PASS DP=23;GPV=1;SPV=0.016783;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:1,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3744 chr4 47607316 . G T 0 PASS DP=61;GPV=1;SPV=0.010694;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:13,3:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3745 chr4 48206777 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3746 chr4 48663336 . AT A 0 PASS DP=43;GPV=1;SPV=0.16591;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3747 chr4 49106475 . T A 0 PASS DP=82;GPV=1;SPV=0.06273;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:18,3:28,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3748 chr4 49143684 . A C 0 PASS DP=51;GPV=1;SPV=0.021804;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:14,4:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3749 chr4 49146153 . T A 0 PASS DP=48;GPV=1;SPV=0.037765;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,6:8,1:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3750 chr4 49154652 . ATTCCATTCCATTCCG A 0 PASS DP=128;GPV=1;SPV=0.0046134;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:51,12:22,4:29,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3751 chr4 49176935 . C T 0 PASS DP=127;GPV=1;SPV=0.0016415;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:57,23:28,9:29,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3752 chr4 49189440 . A G 0 PASS DP=164;GPV=1;SPV=0.04566;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:79,14:43,5:36,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3753 chr4 49189600 . T A 0 PASS DP=131;GPV=1;SPV=0.043504;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:62,7:21,3:41,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3754 chr4 49191971 . T C 0 PASS DP=170;GPV=1;SPV=0.011176;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:76,11:41,8:35,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3755 chr4 49247362 . A C 0 PASS DP=436;GPV=1;SPV=0.015707;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:213,27:110,14:103,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3756 chr4 49247728 . G T 0 PASS DP=283;GPV=1;SPV=0.044397;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:130,27:43,7:87,20
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3757 chr4 49251622 . G T 0 PASS DP=431;GPV=1;SPV=0.043034;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:201,32:106,16:95,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3758 chr4 49258258 . G C 0 PASS DP=139;GPV=1;SPV=0.045994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:61,8:35,3:26,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3759 chr4 49262059 . G T 0 PASS DP=127;GPV=1;SPV=0.046309;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:59,9:37,1:22,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3760 chr4 49262142 . C G 0 PASS DP=130;GPV=1;SPV=0.037371;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:62,10:35,2:27,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3761 chr4 49266887 . A T 0 PASS DP=165;GPV=1;SPV=0.036057;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:69,9:31,7:38,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3762 chr4 49271516 . C A 0 PASS DP=514;GPV=1;SPV=0.04954;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:299:264,35:103,19:161,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3763 chr4 49272320 . CAG C 0 PASS DP=318;GPV=1;SPV=0.020118;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:175:149,26:92,18:57,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3764 chr4 49273776 . A C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3765 chr4 49499983 . T A 0 PASS DP=151;GPV=1;SPV=0.024194;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:76,9:34,2:42,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3766 chr4 49528367 . C G 0 PASS DP=167;GPV=1;SPV=0.008798;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:75,20:42,11:33,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3767 chr4 49528580 . C T 0 PASS DP=152;GPV=1;SPV=0.016846;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:71,17:38,8:33,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3768 chr4 49536801 . C A 0 PASS DP=75;GPV=1;SPV=0.079421;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:25,3:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3769 chr4 49537004 . A T 0 PASS DP=69;GPV=1;SPV=0.044663;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:27,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3770 chr4 49539589 . G T 0 PASS DP=253;GPV=1;SPV=0.012202;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:108,25:32,6:76,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3771 chr4 49542594 . T A 0 PASS DP=341;GPV=1;SPV=0.028817;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:148,19:111,14:37,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3772 chr4 49556231 . G T 0 PASS DP=96;GPV=1;SPV=0.023936;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:21,6:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3773 chr4 49564230 . C T 0 PASS DP=97;GPV=1;SPV=0.023277;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:17,6:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3774 chr4 49577931 . G A 0 PASS DP=483;GPV=1;SPV=0.016158;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:271:243,28:118,13:125,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3775 chr4 49623865 . T G 0 PASS DP=74;GPV=1;SPV=0.01036;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:18,5:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3776 chr4 49623899 . A G 0 PASS DP=77;GPV=1;SPV=0.040811;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,4:16,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3777 chr4 49769446 . A T 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:17,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3778 chr4 49792161 . T C 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3779 chr4 49811692 . A G 0 PASS DP=140;GPV=1;SPV=0.007853;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:70,8:16,4:54,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3780 chr4 49851853 . A G 0 PASS DP=51;GPV=1;SPV=0.059824;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3781 chr4 50070268 . G A 0 PASS DP=36;GPV=1;SPV=0.053977;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:3,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3782 chr4 50396563 . A T 0 PASS DP=64;GPV=1;SPV=0.049522;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:2,0:25,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3783 chr4 50500851 . C G 0 PASS DP=32;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:6,5:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3784 chr4 51168884 . AT A 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3785 chr4 51168890 . A T 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3786 chr4 51299531 . C G 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:25,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3787 chr4 51800205 . C T 0 PASS DP=78;GPV=1;SPV=0.027526;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,9:21,1:21,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3788 chr4 51805358 . T A 0 PASS DP=66;GPV=1;SPV=0.091638;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:31,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3789 chr4 51869177 . T TA 0 PASS DP=33;GPV=1;SPV=0.0065088;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:4,7:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3790 chr4 52529341 . G A 0 PASS DP=72;GPV=1;SPV=5.4898e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:12,11:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3791 chr4 52805823 . G A 0 PASS DP=57;GPV=1;SPV=0.00037903;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:9,6:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3792 chr4 54390724 . C T 0 PASS DP=68;GPV=1;SPV=0.0025244;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:11,2:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3793 chr4 54896152 . G A 0 PASS DP=65;GPV=1;SPV=0.0022419;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:7,6:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3794 chr4 55535739 . C CTT 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3795 chr4 57299586 . T C 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3796 chr4 57299587 . G A 0 PASS DP=44;GPV=1;SPV=0.15645;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:18,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3797 chr4 58068918 . C CTT 0 PASS DP=33;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,9:0,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3798 chr4 58641958 . A ATTTTT 0 PASS DP=28;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,11:4,5:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3799 chr4 58875435 . A G 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3800 chr4 60180653 . T G 0 PASS DP=53;GPV=1;SPV=0.021244;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:19,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3801 chr4 61040718 . A AAG 0 PASS DP=24;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:4,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3802 chr4 62942582 . G A 0 PASS DP=59;GPV=1;SPV=0.0083613;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,4:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3803 chr4 63780494 . C T 0 PASS DP=78;GPV=1;SPV=0.00051624;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:10,4:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3804 chr4 64291817 . A C 0 PASS DP=61;GPV=1;SPV=0.0046664;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,2:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3805 chr4 64834601 . A G 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3806 chr4 65170525 . A T 0 PASS DP=71;GPV=1;SPV=0.0031867;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:17,3:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3807 chr4 65536762 . AT A 0 PASS DP=61;GPV=1;SPV=0.01326;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:13,2:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3808 chr4 65867467 . C G 0 PASS DP=21;GPV=1;SPV=0.017857;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:0,5:0,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3809 chr4 66225901 . G C 0 PASS DP=60;GPV=1;SPV=0.0022875;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:7,7:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3810 chr4 66922720 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:7,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3811 chr4 66954819 . G T 0 PASS DP=60;GPV=1;SPV=2.0129e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:7,9:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3812 chr4 67112889 . T A 0 PASS DP=48;GPV=1;SPV=0.02659;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:10,4:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3813 chr4 68374231 . A AT 0 PASS DP=41;GPV=1;SPV=0.00061425;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:5,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3814 chr4 68708239 . C A 0 PASS DP=58;GPV=1;SPV=0.0072434;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:10,1:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3815 chr4 69762151 . C G 0 PASS DP=61;GPV=1;SPV=0.051532;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:13,6:21,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3816 chr4 69762168 . AC A 0 PASS DP=42;GPV=1;SPV=0.16752;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,4:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3817 chr4 72935056 . A C 0 PASS DP=50;GPV=1;SPV=0.011854;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:11,4:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3818 chr4 73199221 . CTG C 0 PASS DP=43;GPV=1;SPV=0.0022326;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:7,9:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3819 chr4 74778829 . G A 0 PASS DP=46;GPV=1;SPV=0.0089809;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:4,3:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3820 chr4 74866501 . T TTG 0 PASS DP=31;GPV=1;SPV=0.0065359;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,10:1,5:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3821 chr4 74876177 . C T 0 PASS DP=59;GPV=1;SPV=0.0051097;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:8,5:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3822 chr4 75444380 . A C 0 PASS DP=63;GPV=1;SPV=0.012154;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:9,4:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3823 chr4 76667972 . A C 0 PASS DP=29;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3824 chr4 79035584 . G T 0 PASS DP=59;GPV=1;SPV=0.010612;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:13,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3825 chr4 79919865 . TTA T 0 PASS DP=19;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3826 chr4 80390934 . T C 0 PASS DP=46;GPV=1;SPV=0.040221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,3:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3827 chr4 80390952 . CATGTAT C 0 PASS DP=37;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:3,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3828 chr4 80725111 . AT A 0 PASS DP=28;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:3,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3829 chr4 80847514 . G T 0 PASS DP=74;GPV=1;SPV=0.0023811;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:16,4:19,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3830 chr4 81944595 . A T 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:4,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3831 chr4 84413977 . C T 0 PASS DP=62;GPV=1;SPV=7.9781e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,8:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3832 chr4 84695509 . T TAG 0 PASS DP=27;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,4:1,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3833 chr4 84909029 . T TAC 0 PASS DP=61;GPV=1;SPV=0.0044537;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:9,10:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3834 chr4 85227114 . GAA G 0 PASS DP=26;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:4,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3835 chr4 85839849 . T C 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3836 chr4 86191591 . T C 0 PASS DP=21;GPV=1;SPV=0.0021672;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:2,11:1,2:1,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3837 chr4 87354111 . C A 0 PASS DP=51;GPV=1;SPV=0.0002635;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,17:7,13:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3838 chr4 87602062 . G C 0 PASS DP=62;GPV=1;SPV=0.00017769;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:13,8:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3839 chr4 88325476 . A AACACACACACACACAC 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3840 chr4 90548727 . G GAT 0 PASS DP=45;GPV=1;SPV=0.0065711;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:8,8:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3841 chr4 92874787 . C G 0 PASS DP=64;GPV=1;SPV=0.01289;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3842 chr4 93398129 . G GTGTGTGTGTGTGTA 0 PASS DP=36;GPV=1;SPV=0.0070449;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:4,4:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3843 chr4 94516508 . GTCTCTC G 0 PASS DP=43;GPV=1;SPV=0.0042182;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:9,6:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3844 chr4 94659494 . ATG A 0 PASS DP=38;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:4,10:2,7:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3845 chr4 94686504 . TGA T 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3846 chr4 95617505 . T C 0 PASS DP=67;GPV=1;SPV=0.033048;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:9,6:28,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3847 chr4 96073939 . G A 0 PASS DP=85;GPV=1;SPV=0.00062529;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:16,6:19,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3848 chr4 96169856 . TTA T 0 PASS DP=50;GPV=1;SPV=0.024399;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:4,4:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3849 chr4 96173079 . C G 0 PASS DP=67;GPV=1;SPV=0.0010058;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:17,7:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3850 chr4 96870642 . G A 0 PASS DP=49;GPV=1;SPV=0.0055489;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:8,10:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3851 chr4 96871087 . A G 0 PASS DP=30;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3852 chr4 97246408 . C T 0 PASS DP=29;GPV=1;SPV=0.002981;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:5,8:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3853 chr4 97722964 . ATT A 0 PASS DP=40;GPV=1;SPV=0.0018191;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3854 chr4 97738044 . G A 0 PASS DP=68;GPV=1;SPV=0.0050026;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:21,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3855 chr4 98485803 . A G 0 PASS DP=23;GPV=1;SPV=0.035523;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:4,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3856 chr4 101958464 . CT C 0 PASS DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:3,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3857 chr4 102539236 . C CA 0 PASS DP=30;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:5,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3858 chr4 103577197 . CTCTT C 0 PASS DP=47;GPV=1;SPV=0.009884;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:4,1:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3859 chr4 104085363 . A G 0 PASS DP=39;GPV=1;SPV=0.072765;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3860 chr4 104689672 . C T 0 PASS DP=46;GPV=1;SPV=0.016449;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:13,5:5,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3861 chr4 106340393 . G T 0 PASS DP=76;GPV=1;SPV=0.010547;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:41,11:21,4:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3862 chr4 106340394 . A G 0 PASS DP=77;GPV=1;SPV=0.0090402;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:41,11:23,4:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3863 chr4 108099550 . GTGTGTA G 0 PASS DP=33;GPV=1;SPV=0.018146;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:5,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3864 chr4 108099560 . G A 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3865 chr4 108807819 . T C 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3866 chr4 109489638 . TA T 0 PASS DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,1:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3867 chr4 109569497 . C CT 0 PASS DP=35;GPV=1;SPV=0.040508;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:7,3:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3868 chr4 109656379 . TTTTTTTTTTTTTTG T 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3869 chr4 109947819 . G T 0 PASS DP=80;GPV=1;SPV=0.00040854;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:9,5:22,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3870 chr4 109968707 . T C 0 PASS DP=51;GPV=1;SPV=0.18558;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3871 chr4 110127406 . C CAAA 0 PASS DP=40;GPV=1;SPV=0.01286;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,10:13,9:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3872 chr4 110621822 . A C 0 PASS DP=63;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:2,3:0,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3873 chr4 111054977 . C T 0 PASS DP=65;GPV=1;SPV=0.079663;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:19,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3874 chr4 111718414 . T G 0 PASS DP=82;GPV=1;SPV=0.00058795;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:11,10:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3875 chr4 111946369 . GA G 0 PASS DP=32;GPV=1;SPV=0.0094549;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:9,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3876 chr4 112874080 . C CT 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3877 chr4 113036251 . T TA 0 PASS DP=55;GPV=1;SPV=0.00035427;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:8,9:6,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3878 chr4 113490926 . G T 0 PASS DP=42;GPV=1;SPV=0.045213;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3879 chr4 114363005 . T A 0 PASS DP=74;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:39:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3880 chr4 114722013 . C T 0 PASS DP=48;GPV=1;SPV=0.073064;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:14,4:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3881 chr4 114914907 . C T 0 PASS DP=62;GPV=1;SPV=0.00097763;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:11,9:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3882 chr4 117280895 . A G 0 PASS DP=42;GPV=1;SPV=0.11319;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:15,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3883 chr4 118299794 . T TA 0 PASS DP=40;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3884 chr4 118299812 . T A 0 PASS DP=40;GPV=1;SPV=0.014137;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:9,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3885 chr4 118566690 . G A 0 PASS DP=70;GPV=1;SPV=0.14148;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:19,2:24,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3886 chr4 119065816 . A G 0 PASS DP=88;GPV=1;SPV=0.029631;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:19,3:22,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3887 chr4 119278889 . A G 0 PASS DP=33;GPV=1;SPV=0.024163;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3888 chr4 119380045 . ATGTGTG A 0 PASS DP=60;GPV=1;SPV=0.0016056;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,6:7,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3889 chr4 121241245 . GATATAT G 0 PASS DP=27;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:4,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3890 chr4 122262148 . T TTGTGTGTG 0 PASS DP=41;GPV=1;SPV=0.0031331;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,17:2,10:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3891 chr4 122659627 . C CT 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3892 chr4 123101433 . G C 0 PASS DP=69;GPV=1;SPV=0.002347;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:19,3:12,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3893 chr4 124860352 . G A 0 PASS DP=77;GPV=1;SPV=4.1153e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:27,25:12,13:15,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3894 chr4 125873987 . C G 0 PASS DP=76;GPV=1;SPV=3.4736e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:7,4:20,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3895 chr4 125977342 . GT G 0 PASS DP=29;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:10,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3896 chr4 127022288 . G A 0 PASS DP=44;GPV=1;SPV=0.0039729;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,2:10,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3897 chr4 127584099 . T G 0 PASS DP=71;GPV=1;SPV=0.097639;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:22,1:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3898 chr4 128391550 . TTCTCAGCATC T 0 PASS DP=37;GPV=1;SPV=0.0013772;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:6,7:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3899 chr4 129093245 . C G 0 PASS DP=91;GPV=1;SPV=0.0002415;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:42,17:21,7:21,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3900 chr4 129508436 . G C 0 PASS DP=71;GPV=1;SPV=3.2196e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:10,11:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3901 chr4 130548217 . G GA 0 PASS DP=40;GPV=1;SPV=0.19203;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:17,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3902 chr4 130999757 . CT C 0 PASS DP=30;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,5:7,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3903 chr4 131382119 . G A 0 PASS DP=58;GPV=1;SPV=0.057437;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:14,4:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3904 chr4 131601676 . CT C 0 PASS DP=38;GPV=1;SPV=0.0011236;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:10,8:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3905 chr4 131739922 . G A 0 PASS DP=68;GPV=1;SPV=0.07595;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:18,6:23,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3906 chr4 132254108 . G T 0 PASS DP=90;GPV=1;SPV=0.0011222;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:22,3:22,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3907 chr4 133188665 . G GT 0 PASS DP=39;GPV=1;SPV=0.20626;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:15,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3908 chr4 133465011 . G T 0 PASS DP=58;GPV=1;SPV=0.003755;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:8,7:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3909 chr4 133709434 . CTT C 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3910 chr4 134314408 . CAAAAAAAAAAAAAAA C 0 PASS DP=22;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:4,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3911 chr4 134476372 . CT C 0 PASS DP=53;GPV=1;SPV=0.0018803;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,9:8,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3912 chr4 135175844 . C G 0 PASS DP=66;GPV=1;SPV=4.2369e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:24,21:16,12:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3913 chr4 135338205 . T A 0 PASS DP=88;GPV=1;SPV=0.00090248;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,14:27,7:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3914 chr4 135389840 . A T 0 PASS DP=55;GPV=1;SPV=0.0042224;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:16,8:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3915 chr4 136581756 . C T 0 PASS DP=41;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,4:2,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3916 chr4 137476829 . A T 0 PASS DP=56;GPV=1;SPV=0.00030915;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:9,5:12,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3917 chr4 137988192 . G C 0 PASS DP=45;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,4:2,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3918 chr4 138691868 . ATGTT A 0 PASS DP=39;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,4:1,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3919 chr4 139294019 . G A 0 PASS DP=44;GPV=1;SPV=9.5813e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:9,22:2,12:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3920 chr4 140482716 . T C 0 PASS DP=61;GPV=1;SPV=1.1051e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,20:14,10:5,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3921 chr4 140509727 . G A 0 PASS DP=73;GPV=1;SPV=8.8502e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:15,11:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3922 chr4 141195113 . C T 0 PASS DP=64;GPV=1;SPV=0.0074013;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:21,8:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3923 chr4 141365380 . G A 0 PASS DP=57;GPV=1;SPV=0.23136;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:26,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3924 chr4 141367006 . A G 0 PASS DP=40;GPV=1;SPV=0.055478;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,6:9,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3925 chr4 141447702 . C T 0 PASS DP=69;GPV=1;SPV=0.085652;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:22,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3926 chr4 141531350 . ATTTT A 0 PASS DP=52;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,16:12,8:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3927 chr4 142185400 . A G 0 PASS DP=49;GPV=1;SPV=0.26323;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:11,2:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3928 chr4 142270933 . T TTG 0 PASS DP=60;GPV=1;SPV=0.00060741;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,21:12,11:6,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3929 chr4 142658636 . C T 0 PASS DP=72;GPV=1;SPV=1.6244e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:26,25:14,12:12,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3930 chr4 143691301 . G C 0 PASS DP=61;GPV=1;SPV=0.015768;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:13,3:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3931 chr4 143792778 . GTTT G 0 PASS DP=33;GPV=1;SPV=0.012898;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:13,5:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3932 chr4 143884845 . T C 0 PASS DP=30;GPV=1;SPV=0.26692;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3933 chr4 144367898 . T A 0 PASS DP=65;GPV=1;SPV=0.063391;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,6:14,2:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3934 chr4 144396265 . GACTTCAAACTATACTACAAGACTA G 0 PASS DP=85;GPV=1;SPV=0.014917;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:22,5:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3935 chr4 145471093 . CATATAT C 0 PASS DP=23;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,2:3,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3936 chr4 145514483 . A G 0 PASS DP=74;GPV=1;SPV=0.043968;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:14,3:25,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3937 chr4 145693666 . A AC 0 PASS DP=21;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:0,1:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3938 chr4 146128392 . T A 0 PASS DP=64;GPV=1;SPV=0.016381;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:16,3:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3939 chr4 147095728 . C CGT 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3940 chr4 147378325 . G T 0 PASS DP=63;GPV=1;SPV=2.4608e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:10,6:6,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3941 chr4 149160054 . T C 0 PASS DP=72;GPV=1;SPV=0.03902;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,6:19,3:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3942 chr4 150112825 . G A 0 PASS DP=23;GPV=1;SPV=0.0005865;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:2,11:0,4:2,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3943 chr4 151435784 . CAAA C 0 PASS DP=46;GPV=1;SPV=0.024875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:11,4:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3944 chr4 152377598 . C CA 0 PASS DP=38;GPV=1;SPV=0.022117;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:10,11:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3945 chr4 152804089 . C CAT 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:2,2:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3946 chr4 153203103 . CAAAAAAAAA C 0 PASS DP=43;GPV=1;SPV=0.0050173;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,15:10,7:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3947 chr4 153387688 . C A 0 PASS DP=82;GPV=1;SPV=0.040545;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:20,1:26,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3948 chr4 153470210 . CTGCAAAGTCTGGGGAATTATGG C 0 PASS DP=66;GPV=1;SPV=0.030384;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:16,4:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3949 chr4 153480517 . C CA 0 PASS DP=33;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:11,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3950 chr4 154284194 . T G 0 PASS DP=70;GPV=1;SPV=0.00025351;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:12,9:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3951 chr4 154690631 . C T 0 PASS DP=62;GPV=1;SPV=0.026404;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:13,5:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3952 chr4 157780889 . G C 0 PASS DP=59;GPV=1;SPV=0.11642;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:21,3:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3953 chr4 158105035 . G A 0 PASS DP=44;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:8,5:3,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3954 chr4 158435477 . T C 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3955 chr4 159072451 . CTT C 0 PASS DP=26;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:5,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3956 chr4 160299963 . T G 0 PASS DP=77;GPV=1;SPV=0.026663;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,10:22,5:23,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3957 chr4 160619682 . C T 0 PASS DP=63;GPV=1;SPV=0.0087719;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,7:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3958 chr4 161036076 . TTTC T 0 PASS DP=51;GPV=1;SPV=0.12121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:3,3:2,1:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3959 chr4 162279281 . T A 0 PASS DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:12,1:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3960 chr4 162453398 . A ATATATATGC 0 PASS DP=84;GPV=1;SPV=0.049459;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:23,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3961 chr4 162571965 . A G 0 PASS DP=78;GPV=1;SPV=0.00019467;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:10,8:23,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3962 chr4 162594584 . A T 0 PASS DP=54;GPV=1;SPV=0.54715;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:16,4:4,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3963 chr4 163238160 . T C 0 PASS DP=81;GPV=1;SPV=0.00040665;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:10,8:23,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3964 chr4 163894907 . A ACACG 0 PASS DP=45;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:26:0,2:0,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3965 chr4 165238781 . A G 0 PASS DP=77;GPV=1;SPV=0.061837;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:22,1:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3966 chr4 165481016 . AT A 0 PASS DP=45;GPV=1;SPV=0.0014462;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,17:6,8:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3967 chr4 168113386 . G T 0 PASS DP=56;GPV=1;SPV=0.16157;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:24,5:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3968 chr4 168165391 . A C 0 PASS DP=54;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3969 chr4 168520347 . A G 0 PASS DP=44;GPV=1;SPV=0.043687;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:9,3:10,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3970 chr4 168680481 . CA C 0 PASS DP=36;GPV=1;SPV=0.028934;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:13,8:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3971 chr4 168704664 . CA C 0 PASS DP=31;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3972 chr4 168878682 . T TTG 0 PASS DP=27;GPV=1;SPV=0.0057971;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3973 chr4 169016051 . ATCTCTCTCTC A 0 PASS DP=35;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,8:1,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3974 chr4 169283846 . T A 0 PASS DP=63;GPV=1;SPV=0.011513;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:13,7:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3975 chr4 169337332 . G T 0 PASS DP=75;GPV=1;SPV=4.7151e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:26,24:14,9:12,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3976 chr4 169922477 . C CT 0 PASS DP=75;GPV=1;SPV=0.067671;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3977 chr4 170573022 . A G 0 PASS DP=59;GPV=1;SPV=0.10277;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:11,5:6,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3978 chr4 171410940 . G A 0 PASS DP=46;GPV=1;SPV=0.0076774;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,14:3,9:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3979 chr4 171423511 . G T 0 PASS DP=71;GPV=1;SPV=0.0057828;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:16,1:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3980 chr4 172085080 . A AATACAT 0 PASS DP=73;GPV=1;SPV=8.8502e-06;SS=2;SSC=50;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:10,12:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3981 chr4 172487367 . C CTTCTT 0 PASS DP=39;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,5:2,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3982 chr4 172887682 . G C 0 PASS DP=85;GPV=1;SPV=4.7666e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:28,24:14,11:14,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3983 chr4 173022078 . G A 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3984 chr4 173074876 . AG A 0 PASS DP=52;GPV=1;SPV=0.1713;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:11,2:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3985 chr4 173799232 . CTCTCTTTCTT C 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3986 chr4 174007990 . G T 0 PASS DP=88;GPV=1;SPV=8.4559e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:34,21:21,10:13,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3987 chr4 174544193 . G GAAGAAAGAAAGAAAGA 0 PASS DP=48;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:18,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3988 chr4 174788590 . T TAA 0 PASS DP=35;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,11:5,8:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3989 chr4 175564011 . T A 0 PASS DP=75;GPV=1;SPV=1.2509e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,24:13,15:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3990 chr4 177349034 . A ATT 0 PASS DP=32;GPV=1;SPV=0.008413;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,11:2,8:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3991 chr4 178395316 . A AAT 0 PASS DP=38;GPV=1;SPV=0.028014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:9,7:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3992 chr4 178395352 . A T 0 PASS DP=40;GPV=1;SPV=0.00048402;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,16:6,6:6,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3993 chr4 178691496 . CA C 0 PASS DP=39;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:11,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3994 chr4 179037015 . ATTGTTTTTTTT A 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3995 chr4 179924448 . C T 0 PASS DP=90;GPV=1;SPV=1.7081e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:26,26:17,15:9,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3996 chr4 180257232 . T C 0 PASS DP=73;GPV=1;SPV=0.023519;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:21,3:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3997 chr4 180278694 . G GA 0 PASS DP=39;GPV=1;SPV=0.0013083;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,16:9,16:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3998 chr4 180401541 . G T 0 PASS DP=34;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,5:3,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
3999 chr4 180639435 . C A 0 PASS DP=76;GPV=1;SPV=0.035616;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:14,3:21,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4000 chr4 180721638 . G A 0 PASS DP=43;GPV=1;SPV=0.014917;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:10,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4001 chr4 181641760 . A G 0 PASS DP=22;GPV=1;SPV=0.0037594;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:1,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4002 chr4 181746053 . G A 0 PASS DP=64;GPV=1;SPV=2.0181e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:8,7:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4003 chr4 182100646 . T TATACAC 0 PASS DP=52;GPV=1;SPV=0.047515;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:12,5:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4004 chr4 183487423 . CAAAAAAAAAAAAAAAAAAAAAGAA C 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4005 chr4 184132818 . TACAC T 0 PASS DP=66;GPV=1;SPV=0.1268;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:19,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4006 chr4 184372964 . T TTA 0 PASS DP=32;GPV=1;SPV=0.10283;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:11,1:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4007 chr4 184430283 . TGTCTGGCCCAGCCTTTTCCTTGTATGCCTCCTGCA T 0 PASS DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4008 chr4 184480460 . A C 0 PASS DP=54;GPV=1;SPV=0.055176;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,8:13,6:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4009 chr4 184546648 . CT C 0 PASS DP=32;GPV=1;SPV=0.10283;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:16,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4010 chr4 185124123 . T TTGTGTGTG 0 PASS DP=68;GPV=1;SPV=0.0056141;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,18:9,9:16,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4011 chr4 185157455 . CA C 0 PASS DP=38;GPV=1;SPV=0.023323;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:5,9:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4012 chr4 185433419 . G A 0 PASS DP=51;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,5:10,2:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4013 chr4 185487365 . GC G 0 PASS DP=58;GPV=1;SPV=0.00044052;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,21:9,9:10,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4014 chr4 185536811 . G GTTTT 0 PASS DP=41;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,7:7,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4015 chr4 185796509 . G T 0 PASS DP=56;GPV=1;SPV=0.19619;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:12,4:24,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4016 chr4 185926555 . G T 0 PASS DP=74;GPV=1;SPV=0.056428;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:21,6:11,2:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4017 chr4 186466671 . T A 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:20,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4018 chr4 187906580 . C CAA 0 PASS DP=38;GPV=1;SPV=0.028014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:14,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4019 chr4 188023604 . C T 0 PASS DP=41;GPV=1;SPV=0.030216;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4020 chr4 188325903 . G A 0 PASS DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4021 chr4 188411557 . TGA T 0 PASS DP=41;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:16,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4022 chr4 188604588 . AGAT A 0 PASS DP=58;GPV=1;SPV=0.0073681;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:11,6:10,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4023 chr4 189578190 . A T 0 PASS DP=69;GPV=1;SPV=0.0022098;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:13,9:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4024 chr4 189686266 . A G 0 PASS DP=33;GPV=1;SPV=0.14178;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:7,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4025 chr5 302652 . A G 0 PASS DP=37;GPV=1;SPV=0.00072987;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:10,7:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4026 chr5 426881 . G A 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4027 chr5 434455 . TGAAAACAGAGCCAGACTCTC T 0 PASS DP=83;GPV=1;SPV=0.0005395;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:15,6:20,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4028 chr5 434478 . C T 0 PASS DP=90;GPV=1;SPV=0.00075349;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:40,12:17,6:23,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4029 chr5 484383 . G A 0 PASS DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:1,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4030 chr5 658645 . ATTTTTTTTTTTTTTTTTTT A 0 PASS DP=24;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:9,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4031 chr5 1061521 . C T 0 PASS DP=47;GPV=1;SPV=0.027042;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4032 chr5 1379965 . A C 0 PASS DP=41;GPV=1;SPV=0.0053746;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:4,5:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4033 chr5 1867380 . T TG 0 PASS DP=20;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4034 chr5 3492742 . C T 0 PASS DP=57;GPV=1;SPV=0.0058302;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:14,3:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4035 chr5 3761401 . T C 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4036 chr5 4095577 . T TTC 0 PASS DP=36;GPV=1;SPV=0.030499;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4037 chr5 4095578 . C T 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:2,1:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4038 chr5 5385200 . C G 0 PASS DP=75;GPV=1;SPV=1.9475e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:11,10:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4039 chr5 5725921 . C T 0 PASS DP=61;GPV=1;SPV=0.00033318;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4040 chr5 6185027 . C CT 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:8,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4041 chr5 6367923 . TGA T 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4042 chr5 6816160 . C CTT 0 PASS DP=28;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4043 chr5 7143259 . G GTGTGTATATATA 0 PASS DP=41;GPV=1;SPV=0.13115;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,3:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4044 chr5 7589498 . G GAA 0 PASS DP=35;GPV=1;SPV=0.20553;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,4:11,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4045 chr5 8720398 . C CA 0 PASS DP=26;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4046 chr5 8746665 . A T 0 PASS DP=55;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4047 chr5 8972532 . T G 0 PASS DP=58;GPV=1;SPV=0.014208;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:16,5:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4048 chr5 9593951 . G GTATATATATATATATATATA 0 PASS DP=23;GPV=1;SPV=0.12238;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:2,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4049 chr5 9929839 . A T 0 PASS DP=65;GPV=1;SPV=0.0019458;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:14,4:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4050 chr5 9953576 . C CATATATATATAT 0 PASS DP=34;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,11:1,8:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4051 chr5 10418381 . C CA 0 PASS DP=46;GPV=1;SPV=0.026469;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,7:12,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4052 chr5 10638985 . G A 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4053 chr5 11771192 . C CTTTTTT 0 PASS DP=29;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,11:6,9:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4054 chr5 11776456 . G A 0 PASS DP=49;GPV=1;SPV=0.00039776;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4055 chr5 11864540 . G C 0 PASS DP=56;GPV=1;SPV=0.0070909;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:13,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4056 chr5 13798739 . A T 0 PASS DP=56;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:9,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4057 chr5 14812120 . A T 0 PASS DP=48;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4058 chr5 15309583 . GAA G 0 PASS DP=41;GPV=1;SPV=0.15847;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:20,1:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4059 chr5 15715489 . C CA 0 PASS DP=40;GPV=1;SPV=0.0028043;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,12:9,11:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4060 chr5 16662316 . A T 0 PASS DP=20;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,5:2,2:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4061 chr5 17965702 . CATATATATATAT C 0 PASS DP=25;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:3,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4062 chr5 18046470 . TTA T 0 PASS DP=45;GPV=1;SPV=0.10919;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,1:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4063 chr5 18444169 . CATGTATATATACACACATACACATAT C 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:4,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4064 chr5 19177693 . T TAAAA 0 PASS DP=27;GPV=1;SPV=0.0085139;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,10:3,4:2,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4065 chr5 19392403 . G A 0 PASS DP=55;GPV=1;SPV=2.5801e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:6,5:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4066 chr5 19917432 . T A 0 PASS DP=48;GPV=1;SPV=0.019651;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4067 chr5 20617230 . G GAA 0 PASS DP=30;GPV=1;SPV=0.0087567;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,8:5,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4068 chr5 20755141 . C T 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4069 chr5 20757924 . C A 0 PASS DP=79;GPV=1;SPV=0.030818;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:15,3:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4070 chr5 20865871 . A G 0 PASS DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:4,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4071 chr5 21211538 . T G 0 PASS DP=71;GPV=1;SPV=0.0136;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:12,2:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4072 chr5 22999419 . C A 0 PASS DP=48;GPV=1;SPV=0.0020064;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:8,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4073 chr5 23118340 . A T 0 PASS DP=47;GPV=1;SPV=0.049017;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,6:4,2:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4074 chr5 23671914 . ATT A 0 PASS DP=27;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:6,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4075 chr5 23988366 . A ATTCT 0 PASS DP=41;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:6,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4076 chr5 24459502 . A C 0 PASS DP=63;GPV=1;SPV=0.008739;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:9,2:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4077 chr5 24465506 . A G 0 PASS DP=78;GPV=1;SPV=2.2669e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:17,7:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4078 chr5 24560220 . G A 0 PASS DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4079 chr5 24626897 . T TAA 0 PASS DP=50;GPV=1;SPV=0.17768;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:11,3:18,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4080 chr5 24929831 . C T 0 PASS DP=63;GPV=1;SPV=0.0036796;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:7,4:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4081 chr5 26090026 . C A 0 PASS DP=67;GPV=1;SPV=0.0001506;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,8:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4082 chr5 26479675 . C G 0 PASS DP=68;GPV=1;SPV=0.081606;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:25,2:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4083 chr5 26564815 . C G 0 PASS DP=44;GPV=1;SPV=0.0018443;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:5,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4084 chr5 28107717 . TTATATATA T 0 PASS DP=23;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4085 chr5 28581865 . T A 0 PASS DP=72;GPV=1;SPV=0.0019152;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:17,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4086 chr5 28818454 . A AG 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4087 chr5 28929068 . A T 0 PASS DP=45;GPV=1;SPV=0.00014246;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:4,5:9,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4088 chr5 28975244 . T A 0 PASS DP=61;GPV=1;SPV=0.00024975;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:12,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4089 chr5 29032844 . G T 0 PASS DP=63;GPV=1;SPV=0.023889;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:17,5:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4090 chr5 29403167 . C A 0 PASS DP=69;GPV=1;SPV=9.4662e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:10,4:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4091 chr5 29837121 . T TCTCTCTCTCTTTC 0 PASS DP=19;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,2:0,0:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4092 chr5 29927548 . AGTGTGTGT A 0 PASS DP=46;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,14:7,9:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4093 chr5 30353234 . C T 0 PASS DP=45;GPV=1;SPV=0.11664;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,2:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4094 chr5 30490627 . G T 0 PASS DP=49;GPV=1;SPV=0.14851;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4095 chr5 31293367 . A T 0 PASS DP=59;GPV=1;SPV=0.12943;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4096 chr5 31578439 . G A 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4097 chr5 31776626 . T TTTTATTTA 0 PASS DP=52;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:8,5:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4098 chr5 33123422 . T C 0 PASS DP=34;GPV=1;SPV=0.0045179;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,8:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4099 chr5 34251894 . A C 0 PASS DP=32;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,3:1,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4100 chr5 36171226 . C G 0 PASS DP=72;GPV=1;SPV=0.0037034;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:18,7:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4101 chr5 36322184 . T TAAAA 0 PASS DP=32;GPV=1;SPV=0.015172;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4102 chr5 37373706 . A T 0 PASS DP=29;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4103 chr5 37874339 . A T 0 PASS DP=49;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:11,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4104 chr5 37964914 . G A 0 PASS DP=67;GPV=1;SPV=0.0022018;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:12,4:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4105 chr5 39619776 . TTTC T 0 PASS DP=45;GPV=1;SPV=0.21118;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4106 chr5 39967650 . CTTTTT C 0 PASS DP=27;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4107 chr5 40018312 . GTGGGACCTTTGGGACCAGATAGTAGAACAT G 0 PASS DP=53;GPV=1;SPV=0.013486;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:10,6:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4108 chr5 40968559 . ATATATATTT A 0 PASS DP=21;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4109 chr5 42962772 . T TGAGAGAGAGAGAGA 0 PASS DP=41;GPV=1;SPV=0.14971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:11,3:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4110 chr5 43273910 . GTGTTTATCTTTT G 0 PASS DP=69;GPV=1;SPV=0.00046879;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:12,5:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4111 chr5 44196047 . G GA 0 PASS DP=27;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,9:4,6:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4112 chr5 44377438 . C T 0 PASS DP=66;GPV=1;SPV=0.00021022;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,6:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4113 chr5 44852745 . C CAA 0 PASS DP=33;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4114 chr5 45031943 . CTTTGTAAT C 0 PASS DP=57;GPV=1;SPV=0.02029;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:9,4:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4115 chr5 46366052 . G A 0 PASS DP=62;GPV=1;SPV=0.0080354;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:13,7:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4116 chr5 46648697 . A T 0 PASS DP=58;GPV=1;SPV=0.19386;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:25,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4117 chr5 46708068 . T G 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4118 chr5 47074114 . A C 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4119 chr5 47100917 . T A 0 PASS DP=72;GPV=1;SPV=8.135e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:17,7:11,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4120 chr5 47129394 . A G 0 PASS DP=124;GPV=1;SPV=0.042795;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:66,9:11,1:55,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4121 chr5 47130262 . A T 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4122 chr5 47136617 . A G 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:0,0:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4123 chr5 47296981 . A T 0 PASS DP=83;GPV=1;SPV=0.027952;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:1,1:32,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4124 chr5 49622546 . A G 0 PASS DP=290;GPV=1;SPV=0.04415;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:127,24:50,18:77,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4125 chr5 49666505 . A G 0 PASS DP=514;GPV=1;SPV=0.033824;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:269:231,38:138,19:93,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4126 chr5 50114336 . A G 0 PASS DP=55;GPV=1;SPV=0.079987;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:28,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4127 chr5 50114341 . T C 0 PASS DP=52;GPV=1;SPV=0.045693;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:24,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4128 chr5 50137140 . G C 0 PASS DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4129 chr5 50140793 . A T 0 PASS DP=80;GPV=1;SPV=0.017008;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:28,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4130 chr5 51400213 . C T 0 PASS DP=47;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,4:2,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4131 chr5 51414171 . A T 0 PASS DP=52;GPV=1;SPV=0.044512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:16,1:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4132 chr5 52872566 . C T 0 PASS DP=36;GPV=1;SPV=0.038306;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:6,4:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4133 chr5 53458614 . G T 0 PASS DP=51;GPV=1;SPV=0.0048811;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,2:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4134 chr5 54474179 . T TTCTG 0 PASS DP=47;GPV=1;SPV=0.0012329;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:6,4:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4135 chr5 56115212 . AAT A 0 PASS DP=47;GPV=1;SPV=0.070922;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4136 chr5 58870530 . A C 0 PASS DP=65;GPV=1;SPV=0.0050994;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:14,7:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4137 chr5 59795974 . G A 0 PASS DP=74;GPV=1;SPV=0.00012605;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:13,7:16,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4138 chr5 60613826 . G A 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:8,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4139 chr5 62224050 . AGAGTGTGTGT A 0 PASS DP=25;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4140 chr5 62248035 . C T 0 PASS DP=67;GPV=1;SPV=0.045245;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:19,2:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4141 chr5 62441496 . CTTTTTTTTTTTTTTT C 0 PASS DP=30;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,7:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4142 chr5 62533215 . C T 0 PASS DP=49;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,4:6,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4143 chr5 64862369 . A AAAAC 0 PASS DP=55;GPV=1;SPV=0.00051119;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,18:5,14:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4144 chr5 65271376 . TA T 0 PASS DP=29;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:3,7:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4145 chr5 65898796 . TTTCTC T 0 PASS DP=48;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,1:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4146 chr5 67116208 . GT G 0 PASS DP=38;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4147 chr5 67958371 . AACACACACACACAC A 0 PASS DP=28;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4148 chr5 68303425 . C CA 0 PASS DP=39;GPV=1;SPV=0.0013501;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:9,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4149 chr5 69164026 . AATAT A 0 PASS DP=26;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4150 chr5 70219857 . G A 0 PASS DP=563;GPV=1;SPV=0.019992;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:305:273,32:178,21:95,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4151 chr5 70427617 . A G 0 PASS DP=34;GPV=1;SPV=0.12093;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4152 chr5 74925221 . TG T 0 PASS DP=40;GPV=1;SPV=0.012101;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,5:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4153 chr5 77816249 . G GA 0 PASS DP=29;GPV=1;SPV=0.0072464;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:7,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4154 chr5 78279850 . A AATAT 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4155 chr5 78279867 . AAT A 0 PASS DP=38;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4156 chr5 80035844 . T C 0 PASS DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4157 chr5 80505749 . A ATT 0 PASS DP=24;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:2,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4158 chr5 81116837 . G T 0 PASS DP=64;GPV=1;SPV=0.0045171;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,4:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4159 chr5 81737787 . C CA 0 PASS DP=43;GPV=1;SPV=0.052666;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:17,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4160 chr5 82370810 . G A 0 PASS DP=57;GPV=1;SPV=0.1672;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:22,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4161 chr5 84864162 . AT A 0 PASS DP=67;GPV=1;SPV=0.04073;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,7:9,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4162 chr5 85131821 . G A 0 PASS DP=71;GPV=1;SPV=0.00089348;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:14,8:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4163 chr5 85358431 . T C 0 PASS DP=41;GPV=1;SPV=0.015895;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,6:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4164 chr5 85677331 . A G 0 PASS DP=42;GPV=1;SPV=0.00034555;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:9,21:3,10:6,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4165 chr5 88191956 . CA C 0 PASS DP=20;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4166 chr5 89120537 . C T 0 PASS DP=51;GPV=1;SPV=0.01328;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:10,9:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4167 chr5 89311458 . A AAT 0 PASS DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4168 chr5 92880197 . C A 0 PASS DP=74;GPV=1;SPV=0.0011799;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:13,6:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4169 chr5 94564384 . T TTGTG 0 PASS DP=31;GPV=1;SPV=0.0030816;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4170 chr5 96313865 . A G 0 PASS DP=76;GPV=1;SPV=0.017586;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:14,6:27,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4171 chr5 97657022 . C A 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4172 chr5 99522765 . C G 0 PASS DP=120;GPV=1;SPV=0.041137;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:16,4:32,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4173 chr5 100066701 . T A 0 PASS DP=46;GPV=1;SPV=0.018907;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,2:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4174 chr5 100493719 . T C 0 PASS DP=24;GPV=1;SPV=0.013595;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:3,7:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4175 chr5 100593974 . A ATATC 0 PASS DP=35;GPV=1;SPV=0.098039;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,2:2,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4176 chr5 105296226 . G A 0 PASS DP=30;GPV=1;SPV=0.0090312;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4177 chr5 105610844 . A C 0 PASS DP=63;GPV=1;SPV=0.00013297;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:8,7:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4178 chr5 106604048 . A AAAATATAT 0 PASS DP=45;GPV=1;SPV=0.0045549;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,15:5,11:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4179 chr5 106755918 . A C 0 PASS DP=52;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,2:5,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4180 chr5 108772333 . C T 0 PASS DP=37;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4181 chr5 108819179 . C CT 0 PASS DP=28;GPV=1;SPV=0.023188;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4182 chr5 110770611 . A G 0 PASS DP=76;GPV=1;SPV=8.0653e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:24,25:10,11:14,14
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4183 chr5 111991173 . C G 0 PASS DP=73;GPV=1;SPV=0.00013948;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:14,7:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4184 chr5 112527856 . G A 0 PASS DP=74;GPV=1;SPV=0.00028322;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:18,6:14,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4185 chr5 112818834 . G T 0 PASS DP=41;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,4:9,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4186 chr5 113653297 . A G 0 PASS DP=49;GPV=1;SPV=0.1866;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:11,7:7,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4187 chr5 114664322 . C CA 0 PASS DP=35;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,6:4,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4188 chr5 115547919 . A ATATGTGTGTGTG 0 PASS DP=26;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:4,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4189 chr5 116333491 . CAA C 0 PASS DP=30;GPV=1;SPV=0.0072464;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:6,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4190 chr5 116879726 . A C 0 PASS DP=52;GPV=1;SPV=0.037129;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:14,1:5,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4191 chr5 117190472 . T TAGAGAGAGAGAGAGAGAGAGAGAGAG 0 PASS DP=38;GPV=1;SPV=0.20294;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:12,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4192 chr5 117284179 . T G 0 PASS DP=27;GPV=1;SPV=0.076651;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4193 chr5 117689652 . G T 0 PASS DP=71;GPV=1;SPV=0.067973;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:26,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4194 chr5 121657690 . T C 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4195 chr5 122513085 . A G 0 PASS DP=37;GPV=1;SPV=0.04669;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,5:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4196 chr5 122544822 . AAAAAAAAATATAT A 0 PASS DP=30;GPV=1;SPV=0.0017499;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,8:3,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4197 chr5 123023807 . A AACACACACACACAC 0 PASS DP=51;GPV=1;SPV=0.039556;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,5:9,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4198 chr5 123559703 . T G 0 PASS DP=45;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4199 chr5 124029932 . A AACACAC 0 PASS DP=60;GPV=1;SPV=0.0014872;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,14:16,10:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4200 chr5 124764014 . CTT C 0 PASS DP=23;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:7,4:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4201 chr5 124935723 . C CA 0 PASS DP=35;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4202 chr5 126576262 . C CA 0 PASS DP=41;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:3,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4203 chr5 126800951 . CTA C 0 PASS DP=25;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4204 chr5 126800956 . T C 0 PASS DP=27;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:7,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4205 chr5 127110306 . G A 0 PASS DP=68;GPV=1;SPV=0.0010933;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:13,3:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4206 chr5 127614711 . C T 0 PASS DP=24;GPV=1;SPV=0.017028;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:3,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4207 chr5 127676757 . G T 0 PASS DP=62;GPV=1;SPV=0.00049368;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:12,7:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4208 chr5 127974670 . AT A 0 PASS DP=42;GPV=1;SPV=0.014951;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,13:6,6:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4209 chr5 128759156 . A G 0 PASS DP=52;GPV=1;SPV=0.0040779;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:12,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4210 chr5 129389321 . TGTC T 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4211 chr5 131005742 . T C 0 PASS DP=59;GPV=1;SPV=0.034681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:15,5:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4212 chr5 131240280 . G T 0 PASS DP=61;GPV=1;SPV=0.00039828;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,3:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4213 chr5 131466384 . A C 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4214 chr5 132433778 . CT C 0 PASS DP=33;GPV=1;SPV=0.057386;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4215 chr5 132482663 . GT G 0 PASS DP=24;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,10:4,8:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4216 chr5 132726572 . C A 0 PASS DP=51;GPV=1;SPV=7.8617e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:8,4:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4217 chr5 132881827 . G A 0 PASS DP=43;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,4:9,1:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4218 chr5 132889001 . T C 0 PASS DP=64;GPV=1;SPV=0.0031368;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:10,5:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4219 chr5 133588185 . G C 0 PASS DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4220 chr5 135812312 . A C 0 PASS DP=71;GPV=1;SPV=0.014019;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:12,2:21,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4221 chr5 138777250 . T C 0 PASS DP=69;GPV=1;SPV=0.032019;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:9,4:25,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4222 chr5 139155448 . T TGAGAGAGAGAGAGAGAGAGAGAGAGA 0 PASS DP=39;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:7,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4223 chr5 139180058 . T TAA 0 PASS DP=38;GPV=1;SPV=0.014514;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:4,3:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4224 chr5 139381614 . CA C 0 PASS DP=30;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,6:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4225 chr5 144179804 . A G 0 PASS DP=58;GPV=1;SPV=0.00031474;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,9:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4226 chr5 145219813 . T C 0 PASS DP=62;GPV=1;SPV=0.00034047;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,2:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4227 chr5 145964307 . T C 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4228 chr5 146560118 . T C 0 PASS DP=34;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4229 chr5 146679477 . G C 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:1,0:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4230 chr5 147717784 . G A 0 PASS DP=50;GPV=1;SPV=0.0024544;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,5:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4231 chr5 148068578 . A G 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:8,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4232 chr5 148091756 . C T 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,2:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4233 chr5 148476969 . G A 0 PASS DP=65;GPV=1;SPV=0.0035514;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:15,4:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4234 chr5 148615692 . TAAAG T 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4235 chr5 149956178 . A C 0 PASS DP=56;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4236 chr5 151788570 . A ATGTG 0 PASS DP=35;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:9,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4237 chr5 153243557 . CA C 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4238 chr5 153577078 . A ATGGATGGATGGG 0 PASS DP=29;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4239 chr5 153577162 . A T 0 PASS DP=24;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4240 chr5 154586572 . G GA 0 PASS DP=30;GPV=1;SPV=0.037198;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:8,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4241 chr5 154646237 . GT G 0 PASS DP=31;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:2,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4242 chr5 155487913 . A T 0 PASS DP=53;GPV=1;SPV=0.0001844;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4243 chr5 155796806 . C CA 0 PASS DP=26;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:6,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4244 chr5 156416076 . A T 0 PASS DP=53;GPV=1;SPV=0.0017626;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4245 chr5 156957512 . C CAAAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.05132;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:7,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4246 chr5 156981148 . CTCTTTCTTTCTT C 0 PASS DP=43;GPV=1;SPV=0.0069996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,10:1,5:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4247 chr5 157280363 . A ATTTTTTT 0 PASS DP=36;GPV=1;SPV=0.0024977;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4248 chr5 158163405 . T G 0 PASS DP=26;GPV=1;SPV=0.28571;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,2:2,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4249 chr5 160202798 . CA C 0 PASS DP=34;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,6:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4250 chr5 160236016 . G GT 0 PASS DP=31;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4251 chr5 161571650 . CATAT C 0 PASS DP=27;GPV=1;SPV=0.18462;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:1,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4252 chr5 161839895 . C CTCTTTCTTTCTTTCTT 0 PASS DP=19;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:1,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4253 chr5 162242657 . GAT G 0 PASS DP=42;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:5,3:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4254 chr5 162978186 . A AACACACACACACAC 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4255 chr5 163001832 . T TA 0 PASS DP=30;GPV=1;SPV=0.0025641;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:3,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4256 chr5 163226988 . C T 0 PASS DP=36;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,3:0,0:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4257 chr5 163610852 . G C 0 PASS DP=47;GPV=1;SPV=0.0012326;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4258 chr5 164402989 . G A 0 PASS DP=25;GPV=1;SPV=0.00037022;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:0,8:0,3:0,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4259 chr5 166523934 . C A 0 PASS DP=43;GPV=1;SPV=0.00016765;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,2:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4260 chr5 167288558 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:4,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4261 chr5 170243365 . A G 0 PASS DP=33;GPV=1;SPV=0.0015313;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,6:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4262 chr5 172286885 . T TA 0 PASS DP=30;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:6,4:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4263 chr5 173106732 . C CTATTT 0 PASS DP=47;GPV=1;SPV=0.0014808;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:3,6:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4264 chr5 173221743 . A ATG 0 PASS DP=38;GPV=1;SPV=0.0021778;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,8:4,5:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4265 chr5 173338133 . GTATATATATATA G 0 PASS DP=28;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,9:6,6:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4266 chr5 173699017 . A ACGCGCGCG 0 PASS DP=32;GPV=1;SPV=0.0038904;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:5,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4267 chr5 173872574 . A C 0 PASS DP=28;GPV=1;SPV=0.023715;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:5,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4268 chr5 174689912 . C A 0 PASS DP=21;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:5,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4269 chr5 175122973 . A T 0 PASS DP=33;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4270 chr5 175930222 . T C 0 PASS DP=87;GPV=1;SPV=0.012785;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:16,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4271 chr5 175952831 . T G 0 PASS DP=33;GPV=1;SPV=0.0072303;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,1:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4272 chr5 175961219 . A C 0 PASS DP=28;GPV=1;SPV=0.0034188;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4273 chr5 176000359 . T C 0 PASS DP=40;GPV=1;SPV=0.031374;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,6:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4274 chr5 176576579 . CT C 0 PASS DP=28;GPV=1;SPV=0.0017828;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:3,9:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4275 chr5 177048787 . C CTT 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4276 chr5 177644622 . A G 0 PASS DP=22;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4277 chr5 177645886 . C CG 0 PASS DP=23;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4278 chr5 177812290 . A G 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4279 chr5 177871804 . CTTTT C 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4280 chr5 178002236 . T C 0 PASS DP=23;GPV=1;SPV=0.0069323;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4281 chr5 179384589 . C A 0 PASS DP=44;GPV=1;SPV=0.00042646;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4282 chr5 180954948 . C T 0 PASS DP=41;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,4:0,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4283 chr5 181306616 . C T 0 PASS DP=27;GPV=1;SPV=0.043255;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4284 chr6 371529 . CAGG C 0 PASS DP=50;GPV=1;SPV=0.091614;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,4:9,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4285 chr6 851213 . C CAA 0 PASS DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4286 chr6 911480 . TCTACAGACAGGTGAGGGGCCCC T 0 PASS DP=66;GPV=1;SPV=0.00040386;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:12,8:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4287 chr6 3181862 . A T 0 PASS DP=39;GPV=1;SPV=0.1538;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4288 chr6 4258452 . C T 0 PASS DP=42;GPV=1;SPV=0.20263;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,5:13,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4289 chr6 4674905 . G A 0 PASS DP=55;GPV=1;SPV=0.00028843;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:11,3:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4290 chr6 5444493 . AGAG A 0 PASS DP=26;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,4:1,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4291 chr6 7450593 . CTTTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4292 chr6 8044283 . C CAA 0 PASS DP=24;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,8:1,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4293 chr6 8628542 . C T 0 PASS DP=28;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:2,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4294 chr6 8628547 . TTC T 0 PASS DP=33;GPV=1;SPV=0.0026779;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4295 chr6 8978319 . C T 0 PASS DP=17;GPV=1;SPV=0.020362;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,1:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4296 chr6 9516350 . A C 0 PASS DP=67;GPV=1;SPV=0.0049562;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:16,5:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4297 chr6 9752208 . A G 0 PASS DP=55;GPV=1;SPV=6.9341e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:11,7:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4298 chr6 10563774 . A T 0 PASS DP=38;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,2:4,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4299 chr6 11052766 . CA C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4300 chr6 11083103 . C CTTTTTT 0 PASS DP=47;GPV=1;SPV=0.042541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:10,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4301 chr6 11319730 . ACT A 0 PASS DP=43;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:10,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4302 chr6 11319742 . A ACT 0 PASS DP=35;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:7,2:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4303 chr6 11636065 . CA C 0 PASS DP=26;GPV=1;SPV=0.0027473;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:0,11:0,8:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4304 chr6 11700420 . A AATATATATAT 0 PASS DP=18;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,4:2,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4305 chr6 11855203 . T TTGTGTG 0 PASS DP=36;GPV=1;SPV=0.015843;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:6,1:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4306 chr6 12065694 . T C 0 PASS DP=66;GPV=1;SPV=0.10478;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,6:14,2:22,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4307 chr6 12753779 . A T 0 PASS DP=47;GPV=1;SPV=0.016493;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4308 chr6 14031306 . TAACACACA T 0 PASS DP=42;GPV=1;SPV=0.0080824;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:12,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4309 chr6 14163457 . CT C 0 PASS DP=36;GPV=1;SPV=0.017499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,8:5,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4310 chr6 14353495 . G T 0 PASS DP=72;GPV=1;SPV=6.4422e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:15,12:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4311 chr6 14382908 . T TCTTC 0 PASS DP=50;GPV=1;SPV=0.16171;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:15,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4312 chr6 15094541 . A AC 0 PASS DP=31;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:6,2:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4313 chr6 15220872 . CGGGGGAGAGGAAAT C 0 PASS DP=44;GPV=1;SPV=0.010097;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,9:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4314 chr6 15620983 . T G 0 PASS DP=73;GPV=1;SPV=0.00060146;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:17,6:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4315 chr6 16121816 . G C 0 PASS DP=64;GPV=1;SPV=0.0011498;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:18,5:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4316 chr6 16289848 . ATTTTTTTTTTT A 0 PASS DP=21;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:2,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4317 chr6 17020444 . G A 0 PASS DP=31;GPV=1;SPV=0.0024472;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4318 chr6 20310118 . A T 0 PASS DP=60;GPV=1;SPV=0.2066;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:10,4:7,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4319 chr6 20992037 . T C 0 PASS DP=39;GPV=1;SPV=0.037203;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4320 chr6 21635083 . G T 0 PASS DP=36;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:9,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4321 chr6 22077805 . T TTAA 0 PASS DP=51;GPV=1;SPV=0.0070729;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:9,13:4,10:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4322 chr6 22481638 . A G 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4323 chr6 22868282 . CAA C 0 PASS DP=30;GPV=1;SPV=0.0021831;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,8:2,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4324 chr6 23276844 . C A 0 PASS DP=60;GPV=1;SPV=0.0009678;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,6:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4325 chr6 23827822 . C A 0 PASS DP=56;GPV=1;SPV=0.0025987;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:13,11:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4326 chr6 24378956 . G GA 0 PASS DP=20;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:5,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4327 chr6 24389373 . A C 0 PASS DP=36;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4328 chr6 26042796 . A ATT 0 PASS DP=35;GPV=1;SPV=0.13093;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,1:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4329 chr6 27045173 . G A 0 PASS DP=88;GPV=1;SPV=0.001551;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:19,5:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4330 chr6 27221394 . T G 0 PASS DP=62;GPV=1;SPV=0.093861;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4331 chr6 27803526 . TCACACA T 0 PASS DP=37;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,8:9,3:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4332 chr6 28080543 . A AT 0 PASS DP=31;GPV=1;SPV=0.036419;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4333 chr6 28891642 . C T 0 PASS DP=48;GPV=1;SPV=0.021198;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:13,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4334 chr6 29187357 . T C 0 PASS DP=68;GPV=1;SPV=7.3665e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,6:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4335 chr6 29707390 . T TACACAC 0 PASS DP=25;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:4,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4336 chr6 30415665 . C G 0 PASS DP=54;GPV=1;SPV=0.0014573;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,17:6,9:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4337 chr6 30515671 . CTAGA C 0 PASS DP=43;GPV=1;SPV=0.0010237;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:11,10:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4338 chr6 31409323 . A G 0 PASS DP=35;GPV=1;SPV=0.037466;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:6,2:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4339 chr6 31455864 . G A 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:19,3:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4340 chr6 31682815 . AG A 0 PASS DP=23;GPV=1;SPV=0.00054583;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,10:1,6:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4341 chr6 32010061 . G T 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4342 chr6 32215812 . CCTTT C 0 PASS DP=47;GPV=1;SPV=0.014575;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,1:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4343 chr6 32215827 . TC T 0 PASS DP=39;GPV=1;SPV=0.018966;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,1:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4344 chr6 32690111 . A G 0 PASS DP=37;GPV=1;SPV=0.11117;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,6:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4345 chr6 33230722 . G GGAA 0 PASS DP=50;GPV=1;SPV=0.0088608;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,7:4,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4346 chr6 33309720 . CT C 0 PASS DP=17;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,5:0,4:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4347 chr6 34136563 . GAC G 0 PASS DP=34;GPV=1;SPV=0.0079095;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,8:3,4:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4348 chr6 34397811 . C CT 0 PASS DP=39;GPV=1;SPV=0.12474;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:10,1:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4349 chr6 35182724 . TATATATATATA T 0 PASS DP=23;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,2:0,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4350 chr6 35383871 . G A 0 PASS DP=69;GPV=1;SPV=0.025813;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:16,6:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4351 chr6 36175391 . GA G 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4352 chr6 36549329 . CTCTTCT C 0 PASS DP=33;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:1,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4353 chr6 37044481 . T TA 0 PASS DP=35;GPV=1;SPV=0.045954;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:12,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4354 chr6 37121230 . C CAA 0 PASS DP=42;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,10:3,9:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4355 chr6 37959118 . C T 0 PASS DP=69;GPV=1;SPV=0.0010244;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:14,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4356 chr6 39724452 . CA C 0 PASS DP=31;GPV=1;SPV=0.0069323;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,8:3,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4357 chr6 40655197 . ATG A 0 PASS DP=39;GPV=1;SPV=0.28876;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4358 chr6 41283329 . C A 0 PASS DP=59;GPV=1;SPV=0.089909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:19,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4359 chr6 41565463 . A C 0 PASS DP=64;GPV=1;SPV=3.5464e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,11:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4360 chr6 42841075 . TA T 0 PASS DP=25;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,9:4,4:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4361 chr6 43398399 . CT C 0 PASS DP=38;GPV=1;SPV=0.017846;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,4:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4362 chr6 44508149 . A C 0 PASS DP=54;GPV=1;SPV=0.00088456;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:8,6:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4363 chr6 45150720 . G GTT 0 PASS DP=28;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:3,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4364 chr6 45318277 . A T 0 PASS DP=54;GPV=1;SPV=0.03797;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:15,4:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4365 chr6 45866424 . T C 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4366 chr6 47660260 . GACACACAC G 0 PASS DP=33;GPV=1;SPV=0.004644;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,10:3,8:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4367 chr6 49020323 . T C 0 PASS DP=38;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4368 chr6 49721139 . G GTTT 0 PASS DP=33;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:2,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4369 chr6 49769054 . A AACACACACACAC 0 PASS DP=51;GPV=1;SPV=0.030049;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:10,3:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4370 chr6 51202674 . G A 0 PASS DP=54;GPV=1;SPV=0.038803;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:8,7:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4371 chr6 51519797 . C T 0 PASS DP=44;GPV=1;SPV=0.030178;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:4,4:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4372 chr6 51671401 . G A 0 PASS DP=65;GPV=1;SPV=0.0007325;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,5:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4373 chr6 52363343 . C G 0 PASS DP=81;GPV=1;SPV=0.0013429;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:15,5:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4374 chr6 52945792 . A G 0 PASS DP=65;GPV=1;SPV=0.00051706;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,3:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4375 chr6 53253265 . ATC A 0 PASS DP=51;GPV=1;SPV=0.064915;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4376 chr6 54004937 . C CT 0 PASS DP=27;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,7:0,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4377 chr6 54305991 . T TATC 0 PASS DP=82;GPV=1;SPV=0.0012439;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:20,5:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4378 chr6 55055543 . C T 0 PASS DP=56;GPV=1;SPV=0.041422;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:20,4:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4379 chr6 56847002 . C CA 0 PASS DP=46;GPV=1;SPV=0.0084817;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,7:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4380 chr6 56900875 . C CA 0 PASS DP=36;GPV=1;SPV=0.013014;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:4,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4381 chr6 57256745 . T C 0 PASS DP=43;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:3,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4382 chr6 57941432 . CAAA C 0 PASS DP=28;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:3,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4383 chr6 58263125 . A G 0 PASS DP=57;GPV=1;SPV=0.001881;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,2:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4384 chr6 58392444 . A T 0 PASS DP=65;GPV=1;SPV=0.0077272;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:12,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4385 chr6 59562159 . G T 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4386 chr6 59562160 . A T 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4387 chr6 59828833 . C A 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:1,0:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4388 chr6 60656011 . C T 0 PASS DP=32;GPV=1;SPV=1.0579e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,11:1,4:3,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4389 chr6 60700140 . GTATA G 0 PASS DP=23;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:3,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4390 chr6 60807897 . A G 0 PASS DP=60;GPV=1;SPV=0.00044723;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,6:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4391 chr6 62166021 . C A 0 PASS DP=63;GPV=1;SPV=0.0001375;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:6,7:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4392 chr6 66768518 . C CA 0 PASS DP=28;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4393 chr6 67152335 . A G 0 PASS DP=73;GPV=1;SPV=0.02373;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:12,4:19,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4394 chr6 67662695 . C CT 0 PASS DP=21;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4395 chr6 68646475 . C CA 0 PASS DP=50;GPV=1;SPV=0.014937;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:11,7:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4396 chr6 69735444 . A T 0 PASS DP=64;GPV=1;SPV=0.28571;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:2,2:1,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4397 chr6 70227424 . T TAAA 0 PASS DP=39;GPV=1;SPV=0.037328;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4398 chr6 70938255 . GATAC G 0 PASS DP=46;GPV=1;SPV=0.035323;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,3:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4399 chr6 71355521 . G A 0 PASS DP=50;GPV=1;SPV=0.00013746;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,17:9,5:4,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4400 chr6 71382249 . A AAT 0 PASS DP=42;GPV=1;SPV=0.019243;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4401 chr6 71807875 . A AC 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:12,5:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4402 chr6 72196379 . C T 0 PASS DP=70;GPV=1;SPV=0.031815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,7:10,4:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4403 chr6 72275120 . GTATATATATATATATATATATATATATATATA G 0 PASS DP=19;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:2,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4404 chr6 72339150 . A G 0 PASS DP=56;GPV=1;SPV=0.040704;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4405 chr6 72500306 . AAG A 0 PASS DP=31;GPV=1;SPV=0.47431;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,2:10,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4406 chr6 72500330 . AAG A 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4407 chr6 72587312 . AAAAGAAAG A 0 PASS DP=58;GPV=1;SPV=0.041365;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4408 chr6 74165440 . C G 0 PASS DP=69;GPV=1;SPV=9.4662e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:9,5:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4409 chr6 74797476 . C CAT 0 PASS DP=21;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:1,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4410 chr6 74810977 . T C 0 PASS DP=45;GPV=1;SPV=0.0041136;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:6,6:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4411 chr6 75326112 . G T 0 PASS DP=61;GPV=1;SPV=0.041869;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:13,4:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4412 chr6 75370340 . T C 0 PASS DP=43;GPV=1;SPV=0.027357;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,1:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4413 chr6 75563329 . C CTGTGTGTG 0 PASS DP=31;GPV=1;SPV=0.0024526;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:1,5:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4414 chr6 76048137 . C A 0 PASS DP=59;GPV=1;SPV=0.020112;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:8,3:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4415 chr6 76687005 . A C 0 PASS DP=48;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,2:2,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4416 chr6 78186375 . CAAAA C 0 PASS DP=29;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,9:2,7:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4417 chr6 78541340 . GAGAGAGCCAGACAGCA G 0 PASS DP=54;GPV=1;SPV=0.0010369;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:12,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4418 chr6 79461984 . C G 0 PASS DP=56;GPV=1;SPV=0.0087781;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4419 chr6 80145831 . C A 0 PASS DP=76;GPV=1;SPV=1.1889e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:12,9:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4420 chr6 81647497 . A T 0 PASS DP=74;GPV=1;SPV=0.00096111;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:21,8:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4421 chr6 83221158 . C CAAAAAAAAA 0 PASS DP=42;GPV=1;SPV=0.018671;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:8,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4422 chr6 83237314 . GA G 0 PASS DP=37;GPV=1;SPV=0.0093841;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:10,6:5,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4423 chr6 83497818 . A G 0 PASS DP=25;GPV=1;SPV=0.082213;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4424 chr6 84254247 . G GT 0 PASS DP=41;GPV=1;SPV=3.216e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,18:2,11:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4425 chr6 85135130 . A C 0 PASS DP=28;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,2:7,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4426 chr6 85939416 . A T 0 PASS DP=50;GPV=1;SPV=0.10313;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:9,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4427 chr6 87128988 . C CGTATATATATGTATGTATATT 0 PASS DP=52;GPV=1;SPV=0.076205;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,4:7,1:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4428 chr6 87519184 . A ATGTGTGTGTGTG 0 PASS DP=46;GPV=1;SPV=0.012445;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:1,8:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4429 chr6 87599354 . A ATTAT 0 PASS DP=42;GPV=1;SPV=0.0011759;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:5,9:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4430 chr6 87673155 . T A 0 PASS DP=27;GPV=1;SPV=0.16176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,4:4,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4431 chr6 88860839 . C A 0 PASS DP=31;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4432 chr6 90100726 . CAG C 0 PASS DP=53;GPV=1;SPV=0.119;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,4:14,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4433 chr6 90377719 . CTTTTTTCT C 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4434 chr6 90377955 . C CTT 0 PASS DP=28;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:7,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4435 chr6 90613784 . G A 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:2,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4436 chr6 92125323 . C A 0 PASS DP=70;GPV=1;SPV=0.0005561;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:13,8:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4437 chr6 92434273 . GT G 0 PASS DP=51;GPV=1;SPV=0.0039973;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:14,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4438 chr6 93069000 . T A 0 PASS DP=44;GPV=1;SPV=0.0061026;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,6:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4439 chr6 93832826 . C T 0 PASS DP=39;GPV=1;SPV=0.036102;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:3,5:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4440 chr6 94052100 . C CATCT 0 PASS DP=61;GPV=1;SPV=0.039629;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:6,4:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4441 chr6 94575966 . G A 0 PASS DP=58;GPV=1;SPV=0.0066305;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,2:16,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4442 chr6 94581085 . C G 0 PASS DP=70;GPV=1;SPV=0.070286;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:11,3:26,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4443 chr6 95486242 . T C 0 PASS DP=59;GPV=1;SPV=0.075302;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:16,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4444 chr6 97284483 . G GCA 0 PASS DP=48;GPV=1;SPV=0.0067841;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:8,11:5,8:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4445 chr6 97992099 . C A 0 PASS DP=39;GPV=1;SPV=0.0096405;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,7:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4446 chr6 98224506 . A C 0 PASS DP=57;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4447 chr6 98609318 . C CAATAAATAAATA 0 PASS DP=57;GPV=1;SPV=0.021295;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,6:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4448 chr6 99097661 . ATT A 0 PASS DP=45;GPV=1;SPV=0.0053012;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,14:5,12:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4449 chr6 99107066 . C A 0 PASS DP=63;GPV=1;SPV=0.002821;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,1:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4450 chr6 100608289 . TTA T 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,3:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4451 chr6 101681421 . T G 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4452 chr6 102120230 . A G 0 PASS DP=74;GPV=1;SPV=0.00096111;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:21,3:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4453 chr6 102244230 . C CAA 0 PASS DP=36;GPV=1;SPV=0.051826;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,4:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4454 chr6 103531457 . T A 0 PASS DP=61;GPV=1;SPV=0.0061655;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:17,3:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4455 chr6 103711877 . T C 0 PASS DP=40;GPV=1;SPV=0.014654;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,4:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4456 chr6 104444919 . C T 0 PASS DP=45;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:6,2:4,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4457 chr6 105906381 . GCACA G 0 PASS DP=34;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,8:4,5:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4458 chr6 105968316 . C G 0 PASS DP=52;GPV=1;SPV=0.015217;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,2:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4459 chr6 106348910 . C CAA 0 PASS DP=28;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,8:2,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4460 chr6 110923933 . G A 0 PASS DP=65;GPV=1;SPV=2.7315e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:7,9:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4461 chr6 112312923 . C T 0 PASS DP=53;GPV=1;SPV=0.0369;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,7:10,3:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4462 chr6 114045997 . G GCACACACACACA 0 PASS DP=41;GPV=1;SPV=0.03726;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,5:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4463 chr6 115067637 . T A 0 PASS DP=70;GPV=1;SPV=0.061918;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:22,3:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4464 chr6 115531711 . T TATAGATAG 0 PASS DP=57;GPV=1;SPV=0.014357;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:7,4:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4465 chr6 115643130 . C T 0 PASS DP=53;GPV=1;SPV=6.6326e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,7:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4466 chr6 117430681 . CAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,7:3,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4467 chr6 118529612 . A C 0 PASS DP=40;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4468 chr6 120692029 . C T 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4469 chr6 121462554 . C A 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4470 chr6 121606531 . T C 0 PASS DP=30;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:5,5:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4471 chr6 121928140 . CA C 0 PASS DP=35;GPV=1;SPV=0.01473;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:8,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4472 chr6 122053984 . T C 0 PASS DP=60;GPV=1;SPV=0.00047262;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:4,2:20,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4473 chr6 122633975 . C T 0 PASS DP=52;GPV=1;SPV=0.024127;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:10,3:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4474 chr6 122858018 . C T 0 PASS DP=48;GPV=1;SPV=0.0021937;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:14,23:3,11:11,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4475 chr6 123238249 . C T 0 PASS DP=61;GPV=1;SPV=0.00054254;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:12,7:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4476 chr6 124841840 . ATT A 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4477 chr6 125517647 . CA C 0 PASS DP=54;GPV=1;SPV=0.003791;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:18,6:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4478 chr6 125703568 . G A 0 PASS DP=53;GPV=1;SPV=0.0078821;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:9,5:16,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4479 chr6 126856226 . ATTTATTTTAT A 0 PASS DP=50;GPV=1;SPV=0.027339;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:8,5:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4480 chr6 129371607 . C CT 0 PASS DP=28;GPV=1;SPV=0.04053;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4481 chr6 132533977 . C T 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:6,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4482 chr6 132973261 . T C 0 PASS DP=27;GPV=1;SPV=0.015866;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:3,4:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4483 chr6 133385393 . G C 0 PASS DP=50;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,2:0,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4484 chr6 134625659 . C G 0 PASS DP=71;GPV=1;SPV=0.0030392;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:16,5:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4485 chr6 135313506 . G C 0 PASS DP=64;GPV=1;SPV=0.0086598;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:11,2:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4486 chr6 135750267 . C A 0 PASS DP=56;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4487 chr6 136786379 . C CA 0 PASS DP=35;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:9,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4488 chr6 137948309 . A ACT 0 PASS DP=33;GPV=1;SPV=0.036089;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:3,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4489 chr6 138043394 . C CA 0 PASS DP=26;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:9,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4490 chr6 138147228 . GA G 0 PASS DP=43;GPV=1;SPV=0.023132;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:10,5:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4491 chr6 138819248 . A G 0 PASS DP=61;GPV=1;SPV=0.051532;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:19,5:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4492 chr6 138955457 . A AAGTGTGTGTGTGT 0 PASS DP=27;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:3,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4493 chr6 139384172 . G T 0 PASS DP=57;GPV=1;SPV=0.051834;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4494 chr6 142204643 . ATTTAATCCTTTTATATTTAAAAGGATTTAAAT A 0 PASS DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,4:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4495 chr6 142244318 . C CAA 0 PASS DP=31;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,9:2,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4496 chr6 143580508 . C CA 0 PASS DP=46;GPV=1;SPV=0.019763;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4497 chr6 143977473 . T C 0 PASS DP=36;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4498 chr6 145034839 . CTGTCA C 0 PASS DP=68;GPV=1;SPV=0.000451;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:9,7:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4499 chr6 145934473 . T TAAATAAAATAAAATA 0 PASS DP=40;GPV=1;SPV=0.031374;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:7,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4500 chr6 146089679 . T A 0 PASS DP=61;GPV=1;SPV=0.015414;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:19,5:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4501 chr6 146455122 . T C 0 PASS DP=44;GPV=1;SPV=0.039565;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:16,6:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4502 chr6 146568404 . A T 0 PASS DP=39;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:3,2:3,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4503 chr6 147461958 . CA C 0 PASS DP=22;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4504 chr6 147626818 . G A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4505 chr6 147630491 . T C 0 PASS DP=49;GPV=1;SPV=0.004211;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:12,5:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4506 chr6 147719790 . GT G 0 PASS DP=68;GPV=1;SPV=0.048152;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,3:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4507 chr6 147719796 . G A 0 PASS DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:15,3:19,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4508 chr6 148368772 . A G 0 PASS DP=34;GPV=1;SPV=0.055478;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4509 chr6 148899092 . CT C 0 PASS DP=33;GPV=1;SPV=0.0039295;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,8:2,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4510 chr6 149324826 . C CT 0 PASS DP=34;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:7,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4511 chr6 149790516 . C CT 0 PASS DP=31;GPV=1;SPV=0.0048547;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:4,4:3,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4512 chr6 150085900 . CAA C 0 PASS DP=43;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,11:1,6:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4513 chr6 150202396 . C G 0 PASS DP=68;GPV=1;SPV=0.003184;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,6:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4514 chr6 150884141 . A AT 0 PASS DP=33;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4515 chr6 152256431 . AAAATAAAT A 0 PASS DP=43;GPV=1;SPV=0.2206;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:11,3:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4516 chr6 153401835 . A T 0 PASS DP=48;GPV=1;SPV=0.00077962;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:7,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4517 chr6 155627833 . A C 0 PASS DP=32;GPV=1;SPV=0.019883;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4518 chr6 155968845 . C A 0 PASS DP=56;GPV=1;SPV=0.0012998;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:9,5:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4519 chr6 162713493 . C CA 0 PASS DP=32;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:3,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4520 chr6 164455129 . T A 0 PASS DP=50;GPV=1;SPV=0.011343;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,10:6,3:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4521 chr6 164745498 . TC T 0 PASS DP=37;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4522 chr6 164787517 . C A 0 PASS DP=101;GPV=1;SPV=1.7213e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:36,19:18,8:18,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4523 chr6 164939524 . A AG 0 PASS DP=42;GPV=1;SPV=0.1396;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:12,3:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4524 chr6 164939526 . A G 0 PASS DP=43;GPV=1;SPV=0.12337;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,3:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4525 chr6 164939530 . A G 0 PASS DP=38;GPV=1;SPV=0.10585;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4526 chr6 165398498 . T A 0 PASS DP=54;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:2,2:2,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4527 chr6 165656258 . T A 0 PASS DP=44;GPV=1;SPV=0.023879;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,6:6,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4528 chr6 166893252 . C A 0 PASS DP=55;GPV=1;SPV=0.0022056;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4529 chr6 166963191 . TG T 0 PASS DP=39;GPV=1;SPV=0.0088769;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4530 chr6 167177840 . A G 0 PASS DP=59;GPV=1;SPV=0.019711;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:16,5:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4531 chr6 167698965 . T C 0 PASS DP=63;GPV=1;SPV=0.048018;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:19,5:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4532 chr6 167977818 . C G 0 PASS DP=25;GPV=1;SPV=0.014142;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4533 chr6 168603242 . CTT C 0 PASS DP=31;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,8:4,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4534 chr6 168618449 . G C 0 PASS DP=36;GPV=1;SPV=0.073366;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:10,2:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4535 chr6 168931505 . C T 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4536 chr6 168976849 . C T 0 PASS DP=66;GPV=1;SPV=0.038024;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:8,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4537 chr6 169724395 . C G 0 PASS DP=39;GPV=1;SPV=0.14022;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4538 chr6 170656349 . G C 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:11,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4539 chr7 404072 . G A 0 PASS DP=20;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:1,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4540 chr7 494624 . AG A 0 PASS DP=17;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4541 chr7 735331 . C G 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4542 chr7 745433 . C A 0 PASS DP=78;GPV=1;SPV=0.027483;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:27,2:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4543 chr7 955827 . A AC 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:14,3:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4544 chr7 1003990 . T TGA 0 PASS DP=42;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:19,4:2,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4545 chr7 1432727 . G A 0 PASS DP=50;GPV=1;SPV=0.0023389;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:11,3:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4546 chr7 2946634 . C G 0 PASS DP=70;GPV=1;SPV=0.0010857;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:16,6:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4547 chr7 3554208 . C A 0 PASS DP=72;GPV=1;SPV=0.0014163;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:13,4:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4548 chr7 4680676 . C A 0 PASS DP=25;GPV=1;SPV=0.027415;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:3,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4549 chr7 5184282 . C CTT 0 PASS DP=24;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:3,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4550 chr7 5411515 . C CA 0 PASS DP=23;GPV=1;SPV=0.037732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:7,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4551 chr7 5920207 . C CA 0 PASS DP=47;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:7,4:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4552 chr7 5932183 . G A 0 PASS DP=43;GPV=1;SPV=0.040214;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:4,4:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4553 chr7 6092010 . TC T 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4554 chr7 6275849 . C G 0 PASS DP=58;GPV=1;SPV=0.0066305;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:16,6:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4555 chr7 6410880 . A AT 0 PASS DP=27;GPV=1;SPV=0.19783;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,3:7,2:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4556 chr7 6754598 . C A 0 PASS DP=40;GPV=1;SPV=0.13842;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:0,0:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4557 chr7 7429425 . CTCACATACACACACACTCTCTT C 0 PASS DP=48;GPV=1;SPV=0.016338;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:9,2:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4558 chr7 9156843 . C CAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.0070449;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:6,9:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4559 chr7 9762027 . AAC A 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4560 chr7 9762054 . ATATATATTTATAT A 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:10,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4561 chr7 10795416 . C CCACACACA 0 PASS DP=46;GPV=1;SPV=0.011637;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,14:11,11:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4562 chr7 11638318 . T A 0 PASS DP=66;GPV=1;SPV=0.00054466;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,5:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4563 chr7 12502281 . C T 0 PASS DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,4:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4564 chr7 12888535 . T TTC 0 PASS DP=42;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:3,1:18,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4565 chr7 13324565 . T TCC 0 PASS DP=27;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:3,1:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4566 chr7 13820734 . T TCTTC 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4567 chr7 14188044 . A G 0 PASS DP=74;GPV=1;SPV=0.035742;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:18,2:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4568 chr7 14577572 . G A 0 PASS DP=75;GPV=1;SPV=0.00029763;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:16,4:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4569 chr7 14906441 . T C 0 PASS DP=35;GPV=1;SPV=0.16366;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4570 chr7 15432333 . T TATATATATACATAC 0 PASS DP=45;GPV=1;SPV=0.086103;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:9,3:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4571 chr7 15586829 . G T 0 PASS DP=67;GPV=1;SPV=0.014512;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:16,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4572 chr7 15997975 . G T 0 PASS DP=60;GPV=1;SPV=0.011243;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:14,5:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4573 chr7 16628905 . GT G 0 PASS DP=58;GPV=1;SPV=0.039346;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:7,7:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4574 chr7 16919988 . C T 0 PASS DP=66;GPV=1;SPV=0.00086166;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:14,7:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4575 chr7 21203931 . C CCACACACA 0 PASS DP=27;GPV=1;SPV=0.20979;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:3,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4576 chr7 21227141 . C T 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:21,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4577 chr7 21789796 . TC T 0 PASS DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4578 chr7 23034703 . C A 0 PASS DP=59;GPV=1;SPV=6.6609e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:12,10:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4579 chr7 23154355 . A AAAAC 0 PASS DP=55;GPV=1;SPV=0.031691;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:8,5:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4580 chr7 24779498 . G GGTGTGTGTGT 0 PASS DP=53;GPV=1;SPV=0.020195;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:13,5:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4581 chr7 24940809 . CT C 0 PASS DP=54;GPV=1;SPV=0.0336;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4582 chr7 26090458 . C CAA 0 PASS DP=37;GPV=1;SPV=0.016673;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4583 chr7 26301018 . CCAA C 0 PASS DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4584 chr7 28000618 . C T 0 PASS DP=33;GPV=1;SPV=0.019346;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:9,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4585 chr7 28000622 . C T 0 PASS DP=35;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:8,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4586 chr7 28348385 . CTCTCTCTCTCTG C 0 PASS DP=45;GPV=1;SPV=0.053885;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:8,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4587 chr7 28624676 . G GAA 0 PASS DP=33;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:10,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4588 chr7 32443079 . CAAA C 0 PASS DP=21;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,7:1,2:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4589 chr7 33020563 . T C 0 PASS DP=62;GPV=1;SPV=0.0012119;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:12,5:15,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4590 chr7 33783473 . CTT C 0 PASS DP=29;GPV=1;SPV=0.23498;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,5:4,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4591 chr7 34386872 . C T 0 PASS DP=59;GPV=1;SPV=9.3501e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:17,24:9,14:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4592 chr7 35574098 . AG A 0 PASS DP=29;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:8,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4593 chr7 36056071 . GCAGGA G 0 PASS DP=59;GPV=1;SPV=0.0035575;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:14,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4594 chr7 36056080 . T A 0 PASS DP=58;GPV=1;SPV=0.0022392;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,4:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4595 chr7 36056083 . T TG 0 PASS DP=62;GPV=1;SPV=0.0053469;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:16,3:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4596 chr7 36056086 . T TA 0 PASS DP=60;GPV=1;SPV=0.0040413;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:15,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4597 chr7 36198359 . G A 0 PASS DP=29;GPV=1;SPV=0.097902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:3,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4598 chr7 36778301 . C A 0 PASS DP=60;GPV=1;SPV=0.003548;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:12,3:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4599 chr7 37691045 . C G 0 PASS DP=54;GPV=1;SPV=0.0029872;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:12,6:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4600 chr7 38548054 . A G 0 PASS DP=59;GPV=1;SPV=0.027745;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:16,7:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4601 chr7 40346934 . T C 0 PASS DP=45;GPV=1;SPV=1.4316e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,20:6,12:2,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4602 chr7 40988895 . T G 0 PASS DP=58;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:1,2:1,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4603 chr7 43032440 . A AAGAAG 0 PASS DP=25;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4604 chr7 43898788 . AATTT A 0 PASS DP=42;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,6:5,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4605 chr7 44085359 . C A 0 PASS DP=29;GPV=1;SPV=0.051084;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:6,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4606 chr7 45547680 . C CT 0 PASS DP=25;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:3,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4607 chr7 47172855 . T G 0 PASS DP=59;GPV=1;SPV=0.013178;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:12,1:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4608 chr7 47910826 . T TTGTGTGTGTGTGTGTG 0 PASS DP=37;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,5:2,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4609 chr7 48294442 . G GT 0 PASS DP=46;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:2,4:1,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4610 chr7 51086358 . GAAAAAAAAA G 0 PASS DP=31;GPV=1;SPV=0.0011057;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,8:1,6:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4611 chr7 51271899 . T A 0 PASS DP=77;GPV=1;SPV=0.00028557;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:19,7:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4612 chr7 51541412 . G A 0 PASS DP=52;GPV=1;SPV=0.00053327;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4613 chr7 51610845 . G GTT 0 PASS DP=34;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:5,8:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4614 chr7 52199611 . C CAA 0 PASS DP=47;GPV=1;SPV=0.00023911;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,16:3,8:6,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4615 chr7 52403946 . A G 0 PASS DP=43;GPV=1;SPV=0.034956;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,2:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4616 chr7 52445996 . ATTTTTT A 0 PASS DP=26;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,3:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4617 chr7 53857364 . C T 0 PASS DP=70;GPV=1;SPV=0.0048332;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:16,6:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4618 chr7 54302829 . C CA 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4619 chr7 55143189 . C T 0 PASS DP=57;GPV=1;SPV=0.0042512;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:10,5:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4620 chr7 55323199 . T C 0 PASS DP=36;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,3:3,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4621 chr7 55924515 . C A 0 PASS DP=63;GPV=1;SPV=0.0036989;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:11,4:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4622 chr7 56151217 . T C 0 PASS DP=39;GPV=1;SPV=0.22147;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:13,2:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4623 chr7 56168398 . C T 0 PASS DP=46;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:1,3:1,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4624 chr7 56447514 . CT C 0 PASS DP=24;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:5,2:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4625 chr7 56815431 . G C 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4626 chr7 56870617 . CT C 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:12,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4627 chr7 57396857 . CTT C 0 PASS DP=29;GPV=1;SPV=0.0062713;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,10:1,9:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4628 chr7 57408800 . G GTTTTCTTTTT 0 PASS DP=24;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,9:0,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4629 chr7 57499513 . G T 0 PASS DP=55;GPV=1;SPV=0.00070765;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:13,5:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4630 chr7 57617502 . A G 0 PASS DP=73;GPV=1;SPV=0.09126;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:21,3:20,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4631 chr7 57708767 . A G 0 PASS DP=214;GPV=1;SPV=0.042999;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:87,16:51,5:36,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4632 chr7 58074648 . G T 0 PASS DP=192;GPV=1;SPV=0.0026177;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:87,17:52,13:35,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4633 chr7 58074649 . C T 0 PASS DP=194;GPV=1;SPV=0.00093139;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:82,23:48,19:34,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4634 chr7 58081151 . C G 0 PASS DP=212;GPV=1;SPV=0.029944;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:100,21:48,9:52,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4635 chr7 58083546 . C G 0 PASS DP=109;GPV=1;SPV=0.0098911;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:52,11:29,7:23,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4636 chr7 58089349 . CAA C 0 PASS DP=40;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:8,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4637 chr7 58207631 . A C 0 PASS DP=152;GPV=1;SPV=0.016846;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:71,17:29,8:42,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4638 chr7 59849357 . G T 0 PASS DP=43;GPV=1;SPV=0.083867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:1,4:21,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4639 chr7 59967230 . T C 0 PASS DP=142;GPV=1;SPV=0.04075;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:75,9:32,3:43,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4640 chr7 60443284 . T C 0 PASS DP=75;GPV=1;SPV=0.0056445;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:22,8:13,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4641 chr7 60938782 . AT A 0 PASS DP=103;GPV=1;SPV=0.038854;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,9:17,8:19,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4642 chr7 60945409 . C T 0 PASS DP=114;GPV=1;SPV=0.030386;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:21,4:29,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4643 chr7 61002037 . T C 0 PASS DP=60;GPV=1;SPV=0.13544;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4644 chr7 61013469 . G A 0 PASS DP=63;GPV=1;SPV=0.040635;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:18,5:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4645 chr7 61116195 . C A 0 PASS DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4646 chr7 61117113 . C G 0 PASS DP=166;GPV=1;SPV=0.034069;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:80,15:49,5:31,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4647 chr7 61118060 . G T 0 PASS DP=46;GPV=1;SPV=0.0089809;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:3,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4648 chr7 61255209 . T A 0 PASS DP=54;GPV=1;SPV=0.04;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4649 chr7 61409812 . A G 0 PASS DP=253;GPV=1;SPV=0.011294;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:113,23:93,19:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4650 chr7 61410142 . TC T 0 PASS DP=184;GPV=1;SPV=0.010722;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:77,16:30,6:47,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4651 chr7 61527517 . T G 0 PASS DP=69;GPV=1;SPV=0.029593;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:31,6:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4652 chr7 61764874 . T C 0 PASS DP=33;GPV=1;SPV=0.11252;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:6,6:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4653 chr7 61804323 . C T 0 PASS DP=67;GPV=1;SPV=0.0036085;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:17,5:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4654 chr7 61839512 . T G 0 PASS DP=25;GPV=1;SPV=0.24348;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:6,1:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4655 chr7 62030363 . C T 0 PASS DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,2:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4656 chr7 63564349 . A G 0 PASS DP=53;GPV=1;SPV=0.13974;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4657 chr7 63629694 . G A 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4658 chr7 63754992 . T A 0 PASS DP=268;GPV=1;SPV=0.007447;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:129,20:42,4:87,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4659 chr7 63769322 . G A 0 PASS DP=51;GPV=1;SPV=0.010262;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4660 chr7 63835793 . A T 0 PASS DP=64;GPV=1;SPV=0.049522;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,3:15,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4661 chr7 64004410 . T TAAA 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,4:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4662 chr7 64097000 . T C 0 PASS DP=42;GPV=1;SPV=0.032916;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:12,2:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4663 chr7 64491938 . T G 0 PASS DP=43;GPV=1;SPV=0.037956;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,6:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4664 chr7 64847332 . A ATAT 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:0,5:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4665 chr7 64963760 . A T 0 PASS DP=48;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:3,2:3,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4666 chr7 65241850 . T C 0 PASS DP=22;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:8,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4667 chr7 65505802 . T A 0 PASS DP=58;GPV=1;SPV=0.10954;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:19,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4668 chr7 66509760 . C A 0 PASS DP=26;GPV=1;SPV=0.022876;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:1,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4669 chr7 66983916 . A AT 0 PASS DP=28;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:4,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4670 chr7 67266492 . A AT 0 PASS DP=36;GPV=1;SPV=0.069853;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4671 chr7 68029021 . C T 0 PASS DP=24;GPV=1;SPV=0.14757;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:3,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4672 chr7 68479343 . T A 0 PASS DP=53;GPV=1;SPV=0.021836;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:12,3:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4673 chr7 68499365 . G A 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:14,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4674 chr7 68894513 . C A 0 PASS DP=77;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:17,1:24,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4675 chr7 69137867 . G GA 0 PASS DP=55;GPV=1;SPV=0.0050212;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:19,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4676 chr7 70340163 . A AACACACACACACAC 0 PASS DP=41;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4677 chr7 71334028 . A G 0 PASS DP=62;GPV=1;SPV=0.037817;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:16,4:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4678 chr7 71836622 . C CT 0 PASS DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4679 chr7 72287435 . AT A 0 PASS DP=35;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:9,2:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4680 chr7 73805601 . C CAAAAAA 0 PASS DP=31;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:4,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4681 chr7 73835197 . TCTCCCTCTC T 0 PASS DP=32;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,8:3,2:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4682 chr7 73836216 . C T 0 PASS DP=31;GPV=1;SPV=0.032901;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,1:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4683 chr7 74547439 . C CT 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4684 chr7 75010085 . C T 0 PASS DP=36;GPV=1;SPV=0.0084069;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:4,4:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4685 chr7 75110961 . A G 0 PASS DP=28;GPV=1;SPV=0.021859;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,5:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4686 chr7 76441133 . T C 0 PASS DP=66;GPV=1;SPV=0.031136;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:11,1:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4687 chr7 76606109 . G C 0 PASS DP=74;GPV=1;SPV=0.024562;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:18,3:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4688 chr7 76958294 . T G 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4689 chr7 77001029 . C T 0 PASS DP=52;GPV=1;SPV=0.039335;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4690 chr7 77053418 . G A 0 PASS DP=133;GPV=1;SPV=0.0025089;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:51,20:24,11:27,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4691 chr7 77357429 . C A 0 PASS DP=64;GPV=1;SPV=0.00082439;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:18,4:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4692 chr7 77440170 . ATTT A 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,3:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4693 chr7 77998313 . C A 0 PASS DP=52;GPV=1;SPV=0.00039176;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:10,10:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4694 chr7 78004586 . CTGTGTGTGTG C 0 PASS DP=47;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,11:6,5:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4695 chr7 78083388 . GA G 0 PASS DP=16;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,3:2,3:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4696 chr7 80020388 . G C 0 PASS DP=80;GPV=1;SPV=0.045175;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:20,2:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4697 chr7 81539388 . A ATATG 0 PASS DP=41;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:10,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4698 chr7 83775895 . T C 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4699 chr7 84534144 . A G 0 PASS DP=57;GPV=1;SPV=0.00022237;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:14,7:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4700 chr7 85333823 . G C 0 PASS DP=32;GPV=1;SPV=0.0013654;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,4:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4701 chr7 86331047 . C A 0 PASS DP=58;GPV=1;SPV=2.1506e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,9:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4702 chr7 86627560 . CT C 0 PASS DP=19;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4703 chr7 88053624 . GAAAGAAAGAA G 0 PASS DP=37;GPV=1;SPV=0.0049129;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,7:6,2:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4704 chr7 88113703 . AATATATAT A 0 PASS DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4705 chr7 89375746 . C T 0 PASS DP=30;GPV=1;SPV=0.10577;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,5:5,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4706 chr7 89424208 . T C 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4707 chr7 90100890 . A ATT 0 PASS DP=37;GPV=1;SPV=0.0027397;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,8:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4708 chr7 90901691 . C T 0 PASS DP=41;GPV=1;SPV=0.044901;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:4,4:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4709 chr7 91863676 . A C 0 PASS DP=29;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,2:0,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4710 chr7 92870188 . TA T 0 PASS DP=25;GPV=1;SPV=0.0032575;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4711 chr7 95500568 . CAAAA C 0 PASS DP=26;GPV=1;SPV=0.0015076;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,9:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4712 chr7 97702887 . C CTTAAAG 0 PASS DP=18;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:3,4:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4713 chr7 98405344 . GCTTTCTTT G 0 PASS DP=43;GPV=1;SPV=0.011224;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,8:7,5:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4714 chr7 100181901 . C CAA 0 PASS DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4715 chr7 100697996 . CTT C 0 PASS DP=21;GPV=1;SPV=0.01037;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4716 chr7 101002450 . G A 0 PASS DP=291;GPV=1;SPV=0.00231;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:118,17:63,7:55,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4717 chr7 101098714 . G C 0 PASS DP=66;GPV=1;SPV=0.0033765;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:15,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4718 chr7 101320558 . C T 0 PASS DP=29;GPV=1;SPV=0.018182;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,3:0,1:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4719 chr7 101342021 . T TTTC 0 PASS DP=44;GPV=1;SPV=0.21569;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,3:5,1:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4720 chr7 101355066 . TTTTTC T 0 PASS DP=32;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4721 chr7 101946544 . C CA 0 PASS DP=32;GPV=1;SPV=0.15021;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4722 chr7 102060580 . CATATAT C 0 PASS DP=41;GPV=1;SPV=0.042412;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4723 chr7 102564422 . C CAA 0 PASS DP=50;GPV=1;SPV=0.13663;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:22,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4724 chr7 102566067 . G C 0 PASS DP=80;GPV=1;SPV=0.036714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:11,7:16,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4725 chr7 102576894 . G A 0 PASS DP=93;GPV=1;SPV=0.03782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,5:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4726 chr7 102592796 . G A 0 PASS DP=159;GPV=1;SPV=0.00012025;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:56,23:27,13:29,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4727 chr7 102618555 . C T 0 PASS DP=67;GPV=1;SPV=4.7617e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,10:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4728 chr7 105501970 . ATAT A 0 PASS DP=40;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,2:2,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4729 chr7 106586896 . A C 0 PASS DP=49;GPV=1;SPV=2.3666e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:6,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4730 chr7 107749938 . T A 0 PASS DP=60;GPV=1;SPV=0.029646;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,1:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4731 chr7 108692388 . A ATTT 0 PASS DP=26;GPV=1;SPV=0.0055944;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,6:1,3:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4732 chr7 108725935 . A AGAGAGG 0 PASS DP=28;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:4,2:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4733 chr7 110192628 . T A 0 PASS DP=21;GPV=1;SPV=0.063158;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:2,2:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4734 chr7 110315561 . C CCT 0 PASS DP=29;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:4,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4735 chr7 110963987 . A T 0 PASS DP=55;GPV=1;SPV=0.029051;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,6:4,4:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4736 chr7 110989531 . CA C 0 PASS DP=31;GPV=1;SPV=0.037021;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:6,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4737 chr7 115821961 . A ATTTT 0 PASS DP=32;GPV=1;SPV=0.004902;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:0,14:0,10:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4738 chr7 117059807 . C CA 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4739 chr7 119335917 . GT G 0 PASS DP=33;GPV=1;SPV=0.027438;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4740 chr7 120081165 . A G 0 PASS DP=38;GPV=1;SPV=0.0018031;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,6:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4741 chr7 120828655 . C CT 0 PASS DP=22;GPV=1;SPV=0.0095459;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:1,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4742 chr7 123360172 . CTGTG C 0 PASS DP=40;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,5:3,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4743 chr7 125248961 . G GT 0 PASS DP=30;GPV=1;SPV=0.012694;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:5,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4744 chr7 126360474 . C G 0 PASS DP=66;GPV=1;SPV=0.042184;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:11,2:20,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4745 chr7 126595400 . T A 0 PASS DP=25;GPV=1;SPV=0.001998;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,5:0,3:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4746 chr7 128188120 . G A 0 PASS DP=35;GPV=1;SPV=0.125;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,2:1,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4747 chr7 129963936 . G GT 0 PASS DP=44;GPV=1;SPV=0.00068862;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:7,10:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4748 chr7 130782419 . CTCTT C 0 PASS DP=32;GPV=1;SPV=0.0019985;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,3:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4749 chr7 131983250 . A G 0 PASS DP=33;GPV=1;SPV=0.00029663;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:3,5:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4750 chr7 132020640 . G A 0 PASS DP=38;GPV=1;SPV=0.019656;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4751 chr7 132716676 . C CA 0 PASS DP=31;GPV=1;SPV=0.001026;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,10:3,8:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4752 chr7 133227300 . TATA T 0 PASS DP=16;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:2,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4753 chr7 134371720 . C G 0 PASS DP=47;GPV=1;SPV=0.00095953;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,7:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4754 chr7 134544731 . G C 0 PASS DP=57;GPV=1;SPV=0.0014954;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4755 chr7 136452552 . G A 0 PASS DP=39;GPV=1;SPV=0.013177;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:5,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4756 chr7 139490533 . CA C 0 PASS DP=19;GPV=1;SPV=0.00098508;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,8:0,6:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4757 chr7 139623517 . CAA C 0 PASS DP=22;GPV=1;SPV=0.01548;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,3:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4758 chr7 140583926 . G GA 0 PASS DP=31;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4759 chr7 141002399 . C T 0 PASS DP=25;GPV=1;SPV=0.14141;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:3,1:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4760 chr7 141604374 . G GTATATATATA 0 PASS DP=25;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:2,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4761 chr7 142383337 . T TTCTATAA 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4762 chr7 143208151 . A AAGTAT 0 PASS DP=29;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:6,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4763 chr7 143540747 . A G 0 PASS DP=60;GPV=1;SPV=0.010482;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:4,8:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4764 chr7 144149689 . C A 0 PASS DP=23;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,2:0,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4765 chr7 144244550 . C T 0 PASS DP=41;GPV=1;SPV=0.013378;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:4,4:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4766 chr7 144285525 . T C 0 PASS DP=97;GPV=1;SPV=0.01061;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:20,5:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4767 chr7 145196271 . TTTTTCTTTTC T 0 PASS DP=35;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4768 chr7 146856297 . G C 0 PASS DP=40;GPV=1;SPV=0.024462;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:7,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4769 chr7 147010007 . CTT C 0 PASS DP=25;GPV=1;SPV=0.0032575;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,7:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4770 chr7 147317800 . A ATATATGTG 0 PASS DP=45;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:4,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4771 chr7 147995532 . G T 0 PASS DP=51;GPV=1;SPV=0.012694;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,7:3,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4772 chr7 147997556 . CAA C 0 PASS DP=30;GPV=1;SPV=0.01192;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:4,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4773 chr7 148737558 . G GTA 0 PASS DP=46;GPV=1;SPV=0.037585;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,9:6,4:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4774 chr7 150776543 . C CAAA 0 PASS DP=50;GPV=1;SPV=0.0053523;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,15:6,13:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4775 chr7 151027375 . TCTCCCCATGTGATGAAATATGGCCTCGTGGGAAGGGAAAGACCTGACCGTCCC T 0 PASS DP=39;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:10,1:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4776 chr7 151759722 . A T 0 PASS DP=39;GPV=1;SPV=2.5053e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:6,5:2,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4777 chr7 151874171 . GATGTATATGTAT G 0 PASS DP=50;GPV=1;SPV=0.023174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,7:9,4:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4778 chr7 151962609 . G T 0 PASS DP=38;GPV=1;SPV=0.030888;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:5,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4779 chr7 152307195 . GAGGAAGGAAGGAAGGAAGGA G 0 PASS DP=46;GPV=1;SPV=0.11779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:12,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4780 chr7 152674740 . A AT 0 PASS DP=30;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:10,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4781 chr7 152686129 . AAT A 0 PASS DP=55;GPV=1;SPV=0.037091;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4782 chr7 153182612 . G A 0 PASS DP=56;GPV=1;SPV=2.5052e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:6,3:10,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4783 chr7 153217951 . T TCACACACACACACACACA 0 PASS DP=26;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:5,4:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4784 chr7 154436098 . T A 0 PASS DP=68;GPV=1;SPV=0.0050968;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4785 chr7 155158263 . A G 0 PASS DP=19;GPV=1;SPV=0.023736;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,1:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4786 chr7 155946844 . TTCCTTCTC T 0 PASS DP=24;GPV=1;SPV=0.031056;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4787 chr7 156265789 . G A 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4788 chr7 157261307 . A G 0 PASS DP=18;GPV=1;SPV=0.0013986;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,8:0,4:1,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4789 chr7 157827362 . C CCACAACACAA 0 PASS DP=37;GPV=1;SPV=0.0033618;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,10:3,7:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4790 chr7 158126119 . A G 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4791 chr7 158417950 . C T 0 PASS DP=22;GPV=1;SPV=0.0095694;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4792 chr8 768418 . A AT 0 PASS DP=34;GPV=1;SPV=0.079329;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:4,4:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4793 chr8 1130104 . A G 0 PASS DP=51;GPV=1;SPV=0.059189;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,9:12,4:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4794 chr8 2591252 . C CA 0 PASS DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:11,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4795 chr8 3035255 . G A 0 PASS DP=60;GPV=1;SPV=0.0011925;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:13,8:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4796 chr8 3233859 . C G 0 PASS DP=46;GPV=1;SPV=0.0018791;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,4:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4797 chr8 3926079 . CCATA C 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,1:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4798 chr8 4023753 . ATTT A 0 PASS DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,3:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4799 chr8 4974183 . A AT 0 PASS DP=58;GPV=1;SPV=0.0026204;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,8:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4800 chr8 5395533 . T TTTAC 0 PASS DP=50;GPV=1;SPV=0.027862;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,5:8,1:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4801 chr8 6223947 . A G 0 PASS DP=50;GPV=1;SPV=0.099033;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,6:9,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4802 chr8 6228677 . A AACACACAC 0 PASS DP=48;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:8,11:6,6:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4803 chr8 7102233 . A AAT 0 PASS DP=37;GPV=1;SPV=0.01905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4804 chr8 7178754 . AT A 0 PASS DP=47;GPV=1;SPV=0.016427;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,8:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4805 chr8 7208193 . T C 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4806 chr8 7577272 . C T 0 PASS DP=34;GPV=1;SPV=0.064336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:16,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4807 chr8 7616393 . A G 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,3:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4808 chr8 7774382 . C T 0 PASS DP=19;GPV=1;SPV=0.00071446;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:2,7:2,2:0,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4809 chr8 8059318 . G T 0 PASS DP=37;GPV=1;SPV=0.077195;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4810 chr8 8140683 . C T 0 PASS DP=36;GPV=1;SPV=0.0038917;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4811 chr8 8161203 . T C 0 PASS DP=96;GPV=1;SPV=0.0083882;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:37,17:20,10:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4812 chr8 8176793 . G T 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4813 chr8 8186779 . C G 0 PASS DP=100;GPV=1;SPV=0.018219;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:35,6:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4814 chr8 8675975 . CA C 0 PASS DP=34;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,7:3,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4815 chr8 9627563 . G C 0 PASS DP=57;GPV=1;SPV=0.13255;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:12,1:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4816 chr8 9657272 . G A 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:1,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4817 chr8 11567367 . GCTCAGTCAATT G 0 PASS DP=66;GPV=1;SPV=0.038024;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4818 chr8 12439341 . T G 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4819 chr8 12504320 . G T 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4820 chr8 12560699 . TATAC T 0 PASS DP=93;GPV=1;SPV=0.047445;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:26,3:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4821 chr8 12560716 . ATATATACG A 0 PASS DP=88;GPV=1;SPV=0.039034;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:25,2:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4822 chr8 12739967 . G C 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:20,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4823 chr8 12902624 . A G 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,5:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4824 chr8 14471992 . G T 0 PASS DP=71;GPV=1;SPV=0.00089348;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:12,3:19,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4825 chr8 14507129 . C CAAACTGTCTTTTCAATTGATCGGGACAA 0 PASS DP=43;GPV=1;SPV=0.16591;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4826 chr8 15430011 . G A 0 PASS DP=48;GPV=1;SPV=0.0037259;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:6,7:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4827 chr8 16297238 . G GTAAGT 0 PASS DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4828 chr8 16961661 . CT C 0 PASS DP=24;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4829 chr8 17267469 . G T 0 PASS DP=52;GPV=1;SPV=0.050264;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:12,3:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4830 chr8 18018899 . C T 0 PASS DP=46;GPV=1;SPV=0.0072464;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,7:3,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4831 chr8 18164474 . C T 0 PASS DP=65;GPV=1;SPV=0.0062626;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:21,3:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4832 chr8 18562931 . G GA 0 PASS DP=56;GPV=1;SPV=0.12152;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,6:9,5:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4833 chr8 18968867 . A C 0 PASS DP=35;GPV=1;SPV=0.024337;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4834 chr8 20373742 . G A 0 PASS DP=41;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4835 chr8 20469842 . T C 0 PASS DP=75;GPV=1;SPV=0.00034218;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,6:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4836 chr8 20472586 . CT C 0 PASS DP=23;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:2,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4837 chr8 22648907 . G A 0 PASS DP=58;GPV=1;SPV=0.011282;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:10,6:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4838 chr8 22815366 . T C 0 PASS DP=73;GPV=1;SPV=0.00020424;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:10,4:18,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4839 chr8 23346100 . A T 0 PASS DP=56;GPV=1;SPV=0.072845;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:20,3:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4840 chr8 24020415 . CTG C 0 PASS DP=38;GPV=1;SPV=0.052123;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,2:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4841 chr8 24837126 . T A 0 PASS DP=52;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4842 chr8 25410974 . C T 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:2,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4843 chr8 25410983 . GCACGCA G 0 PASS DP=24;GPV=1;SPV=0.25455;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,4:2,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4844 chr8 26002932 . A G 0 PASS DP=32;GPV=1;SPV=0.0055469;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:3,5:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4845 chr8 26004673 . CA C 0 PASS DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4846 chr8 26618481 . GT G 0 PASS DP=35;GPV=1;SPV=0.051469;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:13,4:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4847 chr8 26680343 . CTCTT C 0 PASS DP=36;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,4:4,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4848 chr8 26968288 . C T 0 PASS DP=51;GPV=1;SPV=0.0023514;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:7,4:13,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4849 chr8 27525370 . C T 0 PASS DP=57;GPV=1;SPV=0.0010271;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4850 chr8 27865789 . T A 0 PASS DP=20;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,2:2,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4851 chr8 28773463 . CA C 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,2:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4852 chr8 30904446 . CA C 0 PASS DP=32;GPV=1;SPV=0.0077494;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,6:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4853 chr8 31452437 . T C 0 PASS DP=69;GPV=1;SPV=0.00015011;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:15,7:11,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4854 chr8 31903148 . C CTTTTT 0 PASS DP=23;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4855 chr8 32293718 . C CT 0 PASS DP=26;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,3:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4856 chr8 32861894 . C CA 0 PASS DP=32;GPV=1;SPV=0.0055972;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,9:2,8:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4857 chr8 34653359 . T TACACAC 0 PASS DP=33;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:5,6:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4858 chr8 34981471 . T C 0 PASS DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,2:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4859 chr8 35423852 . C CT 0 PASS DP=44;GPV=1;SPV=0.030898;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:11,5:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4860 chr8 35531347 . T C 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:1,2:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4861 chr8 36989569 . T C 0 PASS DP=49;GPV=1;SPV=0.062277;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,1:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4862 chr8 37293591 . C CTTT 0 PASS DP=26;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4863 chr8 37719760 . AAAAATCATTTTTTATAAAATGATTTAT A 0 PASS DP=45;GPV=1;SPV=0.021554;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:5,4:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4864 chr8 38155939 . C CT 0 PASS DP=27;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:4,5:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4865 chr8 38530230 . C CA 0 PASS DP=31;GPV=1;SPV=0.20221;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,7:7,6:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4866 chr8 38641551 . A T 0 PASS DP=62;GPV=1;SPV=0.00051874;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:17,4:8,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4867 chr8 38883251 . CA C 0 PASS DP=28;GPV=1;SPV=0.010538;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:4,8:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4868 chr8 38889122 . ATTTTTTTTT A 0 PASS DP=17;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,2:0,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4869 chr8 38933790 . A AAAAAAAAAAAAAAAAAAAG 0 PASS DP=38;GPV=1;SPV=0.22636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,3:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4870 chr8 39862529 . CAAAAAAAAAAAAAAAA C 0 PASS DP=25;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:3,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4871 chr8 40628239 . G C 0 PASS DP=58;GPV=1;SPV=0.00056666;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,4:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4872 chr8 40885450 . C A 0 PASS DP=59;GPV=1;SPV=0.001656;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4873 chr8 41899637 . TA T 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4874 chr8 43080779 . C A 0 PASS DP=64;GPV=1;SPV=0.00011238;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:19,5:3,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4875 chr8 43299102 . CT C 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:4,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4876 chr8 43561054 . G A 0 PASS DP=57;GPV=1;SPV=0.01309;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:10,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4877 chr8 45928279 . T A 0 PASS DP=251;GPV=1;SPV=0.026298;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:123,17:96,13:27,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4878 chr8 46948727 . T A 0 PASS DP=75;GPV=1;SPV=0.015934;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:17,8:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4879 chr8 49391539 . A T 0 PASS DP=72;GPV=1;SPV=0.001872;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:15,7:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4880 chr8 49706495 . GT G 0 PASS DP=42;GPV=1;SPV=0.013285;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:4,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4881 chr8 49918516 . CAGATAATTTCTTTAGAA C 0 PASS DP=78;GPV=1;SPV=0.027273;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:20,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4882 chr8 50455983 . T A 0 PASS DP=58;GPV=1;SPV=0.0087456;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:14,2:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4883 chr8 50807212 . G T 0 PASS DP=53;GPV=1;SPV=0.0066036;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,6:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4884 chr8 51171654 . G C 0 PASS DP=58;GPV=1;SPV=0.0094722;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:16,6:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4885 chr8 51887745 . C CT 0 PASS DP=19;GPV=1;SPV=0.0065492;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4886 chr8 53610444 . A ACT 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,2:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4887 chr8 55021486 . G C 0 PASS DP=70;GPV=1;SPV=0.00016802;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:16,9:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4888 chr8 55213856 . CTTTT C 0 PASS DP=18;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4889 chr8 55213864 . T C 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4890 chr8 55730292 . T G 0 PASS DP=69;GPV=1;SPV=0.00032942;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,6:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4891 chr8 56106846 . C G 0 PASS DP=41;GPV=1;SPV=0.02531;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:11,8:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4892 chr8 56533074 . T TCACA 0 PASS DP=38;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,9:2,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4893 chr8 56848939 . A C 0 PASS DP=51;GPV=1;SPV=0.0074736;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:5,2:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4894 chr8 57210828 . G C 0 PASS DP=339;GPV=1;SPV=0.030644;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:205:181,24:126,12:55,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4895 chr8 57356054 . C T 0 PASS DP=67;GPV=1;SPV=6.2405e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:9,5:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4896 chr8 57527689 . C T 0 PASS DP=18;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,2:1,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4897 chr8 58261941 . G T 0 PASS DP=72;GPV=1;SPV=0.026944;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:21,1:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4898 chr8 59456165 . G T 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4899 chr8 59473524 . C CAAA 0 PASS DP=36;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,10:4,10:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4900 chr8 59756155 . A T 0 PASS DP=59;GPV=1;SPV=0.0019356;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:9,4:12,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4901 chr8 60874150 . G A 0 PASS DP=64;GPV=1;SPV=0.00056109;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,8:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4902 chr8 61333479 . C T 0 PASS DP=65;GPV=1;SPV=8.1152e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:9,7:15,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4903 chr8 62305584 . A C 0 PASS DP=66;GPV=1;SPV=0.0019076;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:9,4:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4904 chr8 63498774 . A T 0 PASS DP=57;GPV=1;SPV=0.014722;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:17,3:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4905 chr8 63579606 . G T 0 PASS DP=26;GPV=1;SPV=0.12913;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:3,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4906 chr8 63584605 . G A 0 PASS DP=80;GPV=1;SPV=0.0021565;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:18,5:19,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4907 chr8 63783492 . G C 0 PASS DP=64;GPV=1;SPV=0.0014004;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:14,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4908 chr8 64504827 . G T 0 PASS DP=56;GPV=1;SPV=5.1887e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,8:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4909 chr8 65623892 . A G 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:7,8:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4910 chr8 66304830 . G GTC 0 PASS DP=25;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:9,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4911 chr8 66357348 . G A 0 PASS DP=49;GPV=1;SPV=0.16794;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,4:13,2:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4912 chr8 67475816 . TC T 0 PASS DP=40;GPV=1;SPV=0.033472;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:3,1:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4913 chr8 68366059 . C CA 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,1:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4914 chr8 68789726 . A G 0 PASS DP=64;GPV=1;SPV=0.0017011;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:17,3:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4915 chr8 70242309 . A G 0 PASS DP=68;GPV=1;SPV=0.00034156;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:12,3:16,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4916 chr8 71712673 . T TTTTTTATATATATATATATATATA 0 PASS DP=58;GPV=1;SPV=0.034172;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,10:12,2:13,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4917 chr8 71908412 . T G 0 PASS DP=85;GPV=1;SPV=5.4865e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:12,10:15,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4918 chr8 71914084 . CTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:9,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4919 chr8 72851888 . A G 0 PASS DP=38;GPV=1;SPV=0.0064207;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:11,8:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4920 chr8 73465197 . C T 0 PASS DP=54;GPV=1;SPV=0.0084627;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:9,7:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4921 chr8 73831632 . T G 0 PASS DP=52;GPV=1;SPV=0.0059655;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4922 chr8 74883479 . G A 0 PASS DP=62;GPV=1;SPV=0.016974;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:16,5:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4923 chr8 75424064 . G A 0 PASS DP=61;GPV=1;SPV=0.00022212;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:9,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4924 chr8 75714037 . G A 0 PASS DP=58;GPV=1;SPV=0.0012364;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:12,7:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4925 chr8 75945290 . T G 0 PASS DP=67;GPV=1;SPV=0.0019062;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:14,3:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4926 chr8 76691423 . A G 0 PASS DP=55;GPV=1;SPV=0.0012499;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:11,4:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4927 chr8 78001645 . G T 0 PASS DP=50;GPV=1;SPV=0.035819;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,5:10,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4928 chr8 79787710 . C T 0 PASS DP=27;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,3:1,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4929 chr8 79860397 . C CT 0 PASS DP=54;GPV=1;SPV=0.0057809;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:7,5:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4930 chr8 82761960 . T TACACAC 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4931 chr8 83059537 . CGTGT C 0 PASS DP=34;GPV=1;SPV=0.027219;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:12,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4932 chr8 83710933 . T G 0 PASS DP=65;GPV=1;SPV=0.00095522;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:9,6:17,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4933 chr8 84064952 . GAATTCTGA G 0 PASS DP=61;GPV=1;SPV=0.0040715;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,5:11,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4934 chr8 84563053 . C T 0 PASS DP=50;GPV=1;SPV=0.0018707;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,4:7,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4935 chr8 84951535 . G A 0 PASS DP=34;GPV=1;SPV=0.027005;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4936 chr8 86082779 . T TTAAAAAAAAAA 0 PASS DP=36;GPV=1;SPV=0.058442;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4937 chr8 87307263 . T G 0 PASS DP=66;GPV=1;SPV=0.069705;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,5:19,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4938 chr8 87323710 . G A 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,4:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4939 chr8 87685190 . G T 0 PASS DP=56;GPV=1;SPV=0.12627;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4940 chr8 87764539 . C CCACACACACACACACA 0 PASS DP=40;GPV=1;SPV=0.19203;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:18,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4941 chr8 88226876 . GTATT G 0 PASS DP=51;GPV=1;SPV=0.02975;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:11,7:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4942 chr8 88495491 . T A 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4943 chr8 89215700 . AAT A 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4944 chr8 90307988 . T TAA 0 PASS DP=43;GPV=1;SPV=0.011343;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,10:5,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4945 chr8 92359845 . G T 0 PASS DP=72;GPV=1;SPV=0.053561;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:21,2:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4946 chr8 93887123 . A AG 0 PASS DP=28;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,2:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4947 chr8 94244272 . G A 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4948 chr8 94417480 . TA T 0 PASS DP=53;GPV=1;SPV=0.00751;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:11,7:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4949 chr8 95080164 . T G 0 PASS DP=53;GPV=1;SPV=0.049659;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:16,1:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4950 chr8 98209445 . CA C 0 PASS DP=39;GPV=1;SPV=0.070365;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,7:13,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4951 chr8 99639985 . GTAA G 0 PASS DP=42;GPV=1;SPV=0.091248;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,5:11,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4952 chr8 100173752 . T A 0 PASS DP=64;GPV=1;SPV=0.0086598;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:8,4:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4953 chr8 102265001 . G A 0 PASS DP=71;GPV=1;SPV=0.0031867;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:17,4:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4954 chr8 102422896 . A AATAAT 0 PASS DP=69;GPV=1;SPV=0.0003919;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,11:14,5:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4955 chr8 102422898 . A T 0 PASS DP=69;GPV=1;SPV=0.00014199;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:12,5:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4956 chr8 102988780 . A C 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4957 chr8 103757014 . A T 0 PASS DP=55;GPV=1;SPV=0.17677;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,5:4,2:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4958 chr8 104803651 . C CT 0 PASS DP=18;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:5,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4959 chr8 105877643 . C T 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,1:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4960 chr8 105877656 . ATATT A 0 PASS DP=19;GPV=1;SPV=0.12384;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,3:4,1:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4961 chr8 106283108 . G C 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:5,4:10,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4962 chr8 106704393 . CTTTTTTTTTTT C 0 PASS DP=25;GPV=1;SPV=0.28571;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,2:0,1:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4963 chr8 106852135 . T A 0 PASS DP=34;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,2:3,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4964 chr8 107012898 . A G 0 PASS DP=57;GPV=1;SPV=0.0003039;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:8,6:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4965 chr8 107241914 . G A 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:20,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4966 chr8 107342782 . TACACACACACACAC T 0 PASS DP=42;GPV=1;SPV=0.01623;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,9:5,7:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4967 chr8 107370725 . G A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,1:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4968 chr8 107681071 . TA T 0 PASS DP=38;GPV=1;SPV=0.0029007;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4969 chr8 109235877 . C CT 0 PASS DP=35;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4970 chr8 109725620 . C T 0 PASS DP=52;GPV=1;SPV=0.0012739;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:14,8:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4971 chr8 109940110 . T C 0 PASS DP=49;GPV=1;SPV=0.0053357;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:5,4:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4972 chr8 110728374 . T C 0 PASS DP=47;GPV=1;SPV=0.25496;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,4:11,2:16,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4973 chr8 111871255 . A T 0 PASS DP=68;GPV=1;SPV=0.0027922;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:16,7:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4974 chr8 113444374 . G C 0 PASS DP=19;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,6:0,2:0,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4975 chr8 113761203 . A T 0 PASS DP=68;GPV=1;SPV=0.0025244;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:15,6:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4976 chr8 114210471 . CTTTT C 0 PASS DP=33;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,12:5,9:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4977 chr8 116457834 . C T 0 PASS DP=79;GPV=1;SPV=7.4607e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:17,6:8,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4978 chr8 117230448 . C A 0 PASS DP=52;GPV=1;SPV=0.00054703;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:10,8:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4979 chr8 117261582 . T A 0 PASS DP=43;GPV=1;SPV=0.092375;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:7,1:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4980 chr8 118002381 . C CAA 0 PASS DP=34;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:8,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4981 chr8 118039557 . CAA C 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,5:2,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4982 chr8 118234710 . C CA 0 PASS DP=52;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,9:2,8:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4983 chr8 118366878 . AAAT A 0 PASS DP=42;GPV=1;SPV=0.0072004;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,4:5,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4984 chr8 119161003 . C T 0 PASS DP=29;GPV=1;SPV=0.17135;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4985 chr8 119706719 . TTCTA T 0 PASS DP=36;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:5,1:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4986 chr8 119706737 . C T 0 PASS DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:5,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4987 chr8 119858172 . C CAA 0 PASS DP=24;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,2:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4988 chr8 121353652 . CTT C 0 PASS DP=27;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:5,3:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4989 chr8 122102608 . A AT 0 PASS DP=57;GPV=1;SPV=0.0081097;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:12,8:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4990 chr8 122307907 . T TCACA 0 PASS DP=48;GPV=1;SPV=0.019732;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4991 chr8 122314225 . G A 0 PASS DP=58;GPV=1;SPV=0.0087456;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,4:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4992 chr8 124239204 . A AAAAAAAAGAAAG 0 PASS DP=27;GPV=1;SPV=0.1226;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:4,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4993 chr8 125477576 . A G 0 PASS DP=65;GPV=1;SPV=0.010154;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:12,2:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4994 chr8 126053788 . A G 0 PASS DP=65;GPV=1;SPV=0.00025694;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:12,11:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4995 chr8 126682726 . G A 0 PASS DP=55;GPV=1;SPV=0.018909;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4996 chr8 128717468 . G C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,3:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4997 chr8 130467443 . CAAAAAA C 0 PASS DP=26;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4998 chr8 130707431 . A T 0 PASS DP=75;GPV=1;SPV=1.8253e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,6:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
4999 chr8 130934253 . A G 0 PASS DP=66;GPV=1;SPV=4.5866e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:12,8:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5000 chr8 131139943 . T A 0 PASS DP=65;GPV=1;SPV=0.0035972;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:12,5:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5001 chr8 132403016 . C CAAAAA 0 PASS DP=32;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,4:6,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5002 chr8 133214050 . AGT A 0 PASS DP=57;GPV=1;SPV=0.20321;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,3:11,1:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5003 chr8 133445676 . C T 0 PASS DP=68;GPV=1;SPV=0.0020609;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:15,5:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5004 chr8 134874840 . C CA 0 PASS DP=36;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,12:2,9:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5005 chr8 135262344 . G T 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:2,0:18,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5006 chr8 135536234 . GTT G 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,5:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5007 chr8 136313794 . T A 0 PASS DP=53;GPV=1;SPV=0.034248;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,2:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5008 chr8 136350316 . A AGATGTAATG 0 PASS DP=49;GPV=1;SPV=0.0066039;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:7,5:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5009 chr8 136723179 . G GCACACACACA 0 PASS DP=23;GPV=1;SPV=0.025058;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,6:1,5:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5010 chr8 137214206 . GTATATATA G 0 PASS DP=17;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,4:0,1:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5011 chr8 138248823 . C CAAAAA 0 PASS DP=33;GPV=1;SPV=0.015968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:8,7:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5012 chr8 138613540 . C T 0 PASS DP=74;GPV=1;SPV=2.4756e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:12,5:14,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5013 chr8 138829403 . G GTTTTT 0 PASS DP=19;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:3,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5014 chr8 143065758 . CTT C 0 PASS DP=40;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:5,3:16,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5015 chr8 143405337 . C G 0 PASS DP=72;GPV=1;SPV=0.016594;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,6:7,1:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5016 chr8 143430504 . C CCCGGCGGGGGCGGGGGGGCG 0 PASS DP=40;GPV=1;SPV=0.0056397;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,5:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5017 chr8 144913678 . A AACACAC 0 PASS DP=39;GPV=1;SPV=0.051826;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:12,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5018 chr9 545752 . A T 0 PASS DP=25;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:1,4:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5019 chr9 1573639 . G C 0 PASS DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5020 chr9 3707361 . C T 0 PASS DP=56;GPV=1;SPV=0.0097742;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:11,6:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5021 chr9 6790682 . A AAG 0 PASS DP=27;GPV=1;SPV=0.006192;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:2,3:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5022 chr9 6866971 . TTGTGTG T 0 PASS DP=34;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:4,3:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5023 chr9 7029298 . T G 0 PASS DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:10,4:9,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5024 chr9 8353818 . ATATATGTATATATGT A 0 PASS DP=43;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:4,4:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5025 chr9 8870687 . A AACACACAC 0 PASS DP=44;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,10:7,7:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5026 chr9 9671005 . G A 0 PASS DP=58;GPV=1;SPV=0.0048714;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:13,3:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5027 chr9 9878253 . A G 0 PASS DP=67;GPV=1;SPV=0.0003601;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:16,9:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5028 chr9 10031987 . T A 0 PASS DP=59;GPV=1;SPV=6.3758e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:14,23:9,13:5,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5029 chr9 11379751 . C T 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:13,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5030 chr9 11778177 . C CAAAAAAA 0 PASS DP=37;GPV=1;SPV=0.057585;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,7:11,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5031 chr9 12922049 . A C 0 PASS DP=66;GPV=1;SPV=0.00054998;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:12,4:14,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5032 chr9 13345168 . G A 0 PASS DP=50;GPV=1;SPV=0.00019093;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:8,8:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5033 chr9 13668785 . A T 0 PASS DP=59;GPV=1;SPV=0.0047434;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:10,6:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5034 chr9 14083479 . T TA 0 PASS DP=27;GPV=1;SPV=0.024242;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,7:0,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5035 chr9 14091075 . C A 0 PASS DP=61;GPV=1;SPV=0.14145;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,2:18,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5036 chr9 15406668 . G A 0 PASS DP=41;GPV=1;SPV=0.0051722;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5037 chr9 15774246 . TAAA T 0 PASS DP=29;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:4,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5038 chr9 15830968 . A AT 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:4,5:7,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5039 chr9 16779114 . T TA 0 PASS DP=42;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,4:14,1:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5040 chr9 16935628 . G T 0 PASS DP=63;GPV=1;SPV=0.00022074;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,7:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5041 chr9 18735753 . T C 0 PASS DP=33;GPV=1;SPV=0.0083519;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,6:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5042 chr9 19891171 . T A 0 PASS DP=62;GPV=1;SPV=0.0019011;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:15,3:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5043 chr9 20599459 . A T 0 PASS DP=59;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,4:9,1:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5044 chr9 23070620 . C CAA 0 PASS DP=39;GPV=1;SPV=0.057736;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:18,6:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5045 chr9 25595525 . CTT C 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5046 chr9 26249433 . C A 0 PASS DP=64;GPV=1;SPV=0.00080797;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:19,4:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5047 chr9 26369801 . C CA 0 PASS DP=27;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:5,7:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5048 chr9 26621231 . G C 0 PASS DP=67;GPV=1;SPV=0.00052875;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:17,3:7,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5049 chr9 26645167 . TAC T 0 PASS DP=32;GPV=1;SPV=0.050612;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,3:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5050 chr9 27403516 . ATTT A 0 PASS DP=29;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,10:3,4:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5051 chr9 27444154 . A AGAAG 0 PASS DP=41;GPV=1;SPV=0.0012598;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:8,8:3,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5052 chr9 27691811 . C T 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,1:12,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5053 chr9 27825162 . G T 0 PASS DP=64;GPV=1;SPV=0.0011908;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:12,5:15,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5054 chr9 29898309 . C A 0 PASS DP=65;GPV=1;SPV=0.00067124;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:11,7:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5055 chr9 30518419 . T C 0 PASS DP=55;GPV=1;SPV=0.0044113;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,2:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5056 chr9 31290559 . C A 0 PASS DP=57;GPV=1;SPV=0.0014939;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:14,4:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5057 chr9 32577585 . G GT 0 PASS DP=45;GPV=1;SPV=0.025825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,9:11,7:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5058 chr9 32769927 . C CAGAGAG 0 PASS DP=38;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,12:3,9:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5059 chr9 33317433 . A T 0 PASS DP=45;GPV=1;SPV=0.01269;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,4:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5060 chr9 34301987 . ATT A 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,1:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5061 chr9 34636320 . A T 0 PASS DP=46;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,2:0,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5062 chr9 36187024 . CTT C 0 PASS DP=31;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:2,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5063 chr9 37258757 . T TA 0 PASS DP=32;GPV=1;SPV=0.14279;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:15,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5064 chr9 37377794 . A G 0 PASS DP=44;GPV=1;SPV=0.17677;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,5:7,1:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5065 chr9 37384136 . TTTCCTTCC T 0 PASS DP=35;GPV=1;SPV=0.0047325;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,5:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5066 chr9 37649466 . C A 0 PASS DP=69;GPV=1;SPV=3.8209e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:10,12:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5067 chr9 37741450 . G GAC 0 PASS DP=37;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:3,4:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5068 chr9 38983868 . C T 0 PASS DP=115;GPV=1;SPV=0.042309;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:52,9:18,7:34,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5069 chr9 38993833 . C T 0 PASS DP=151;GPV=1;SPV=0.045773;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:76,13:23,3:53,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5070 chr9 39002559 . T G 0 PASS DP=128;GPV=1;SPV=0.031751;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:61,17:30,8:31,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5071 chr9 39584576 . C CAA 0 PASS DP=31;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:2,4:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5072 chr9 39586459 . G T 0 PASS DP=138;GPV=1;SPV=0.0060513;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:71,9:55,5:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5073 chr9 39625941 . C T 0 PASS DP=46;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:16,2:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5074 chr9 39776863 . G A 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5075 chr9 39818290 . T C 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5076 chr9 40716658 . T A 0 PASS DP=68;GPV=1;SPV=0.081606;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:23,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5077 chr9 40971176 . A C 0 PASS DP=233;GPV=1;SPV=0.029454;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:104,18:47,8:57,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5078 chr9 41000264 . T G 0 PASS DP=175;GPV=1;SPV=0.036965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:84,17:39,6:45,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5079 chr9 41082797 . C T 0 PASS DP=122;GPV=1;SPV=0.0069784;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:24,6:39,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5080 chr9 41158015 . G A 0 PASS DP=33;GPV=1;SPV=0.037533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,2:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5081 chr9 41184026 . C T 0 PASS DP=56;GPV=1;SPV=0.023196;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,6:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5082 chr9 41234892 . C A 0 PASS DP=172;GPV=1;SPV=0.00011711;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:85,16:17,11:68,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5083 chr9 41241909 . T C 0 PASS DP=97;GPV=1;SPV=0.031176;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:53,12:24,2:29,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5084 chr9 41266616 . C T 0 PASS DP=114;GPV=1;SPV=0.03955;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:32,9:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5085 chr9 41294007 . G A 0 PASS DP=158;GPV=1;SPV=0.024194;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:75,16:29,5:46,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5086 chr9 41474195 . A C 0 PASS DP=40;GPV=1;SPV=0.025784;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,2:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5087 chr9 41697097 . C CA 0 PASS DP=59;GPV=1;SPV=0.11505;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:20,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5088 chr9 41803726 . G A 0 PASS DP=69;GPV=1;SPV=0.036397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5089 chr9 42158933 . CAGACTGGACT C 0 PASS DP=70;GPV=1;SPV=7.8055e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:13,9:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5090 chr9 42164810 . G T 0 PASS DP=60;GPV=1;SPV=0.15576;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:16,1:21,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5091 chr9 43181108 . T A 0 PASS DP=60;GPV=1;SPV=0.13544;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:16,2:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5092 chr9 43301126 . A T 0 PASS DP=122;GPV=1;SPV=0.014473;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:61,7:29,5:32,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5093 chr9 43301142 . ATATT A 0 PASS DP=116;GPV=1;SPV=0.013323;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:29,6:28,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5094 chr9 43301203 . TTG T 0 PASS DP=134;GPV=1;SPV=0.0090494;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:68,8:34,6:34,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5095 chr9 44027408 . C T 0 PASS DP=40;GPV=1;SPV=0.19203;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,3:14,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5096 chr9 44030494 . G C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5097 chr9 44545523 . A C 0 PASS DP=33;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5098 chr9 45308796 . C T 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5099 chr9 60568577 . C G 0 PASS DP=101;GPV=1;SPV=0.040799;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:52,9:36,4:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5100 chr9 60575712 . CA C 0 PASS DP=198;GPV=1;SPV=0.033306;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:87,15:43,9:44,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5101 chr9 60575716 . G C 0 PASS DP=194;GPV=1;SPV=0.047582;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:92,15:40,9:52,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5102 chr9 61174867 . G A 0 PASS DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5103 chr9 61562987 . A G 0 PASS DP=62;GPV=1;SPV=0.034805;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,7:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5104 chr9 61846153 . G A 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5105 chr9 61915381 . T C 0 PASS DP=108;GPV=1;SPV=0.046035;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:49,9:25,8:24,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5106 chr9 62307653 . A T 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5107 chr9 62748136 . G A 0 PASS DP=51;GPV=1;SPV=0.047306;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:10,7:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5108 chr9 63039174 . T G 0 PASS DP=22;GPV=1;SPV=0.004644;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:1,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5109 chr9 63759448 . C T 0 PASS DP=224;GPV=1;SPV=0.02963;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:103,15:39,6:64,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5110 chr9 63825097 . T C 0 PASS DP=412;GPV=1;SPV=0.035766;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:242:216,26:65,5:151,21
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5111 chr9 63885664 . C G 0 PASS DP=170;GPV=1;SPV=0.014958;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:86,10:48,5:38,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5112 chr9 64082964 . TTATATATA T 0 PASS DP=24;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:7,2:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5113 chr9 64109795 . C CAATT 0 PASS DP=89;GPV=1;SPV=0.0015933;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:34,16:16,8:18,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5114 chr9 64446417 . A G 0 PASS DP=99;GPV=1;SPV=0.015578;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:49,7:29,3:20,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5115 chr9 64469826 . C CTTTT 0 PASS DP=22;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:2,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5116 chr9 64722888 . T A 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5117 chr9 65061096 . C T 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:2,1:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5118 chr9 65377823 . G A 0 PASS DP=42;GPV=1;SPV=0.012829;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:15,5:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5119 chr9 65514830 . T C 0 PASS DP=73;GPV=1;SPV=0.03355;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:24,6:17,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5120 chr9 65551509 . A T 0 PASS DP=66;GPV=1;SPV=0.023216;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:10,7:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5121 chr9 65554563 . C T 0 PASS DP=47;GPV=1;SPV=0.025087;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:14,1:9,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5122 chr9 65650975 . C T 0 PASS DP=148;GPV=1;SPV=0.038338;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:66,18:30,16:36,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5123 chr9 65770295 . G A 0 PASS DP=57;GPV=1;SPV=0.15715;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:9,1:26,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5124 chr9 66160564 . C T 0 PASS DP=62;GPV=1;SPV=0.011804;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:14,7:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5125 chr9 66261718 . C T 0 PASS DP=57;GPV=1;SPV=0.016158;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:19,6:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5126 chr9 66369884 . A G 0 PASS DP=56;GPV=1;SPV=0.028693;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,7:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5127 chr9 67085333 . AATTT A 0 PASS DP=38;GPV=1;SPV=0.064151;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5128 chr9 67630851 . A G 0 PASS DP=50;GPV=1;SPV=0.20137;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,2:15,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5129 chr9 67787558 . A T 0 PASS DP=60;GPV=1;SPV=0.038355;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:1,1:24,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5130 chr9 67798387 . C A 0 PASS DP=194;GPV=1;SPV=0.020786;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:86,23:33,10:53,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5131 chr9 67832491 . A C 0 PASS DP=50;GPV=1;SPV=0.011315;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,2:10,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5132 chr9 67881117 . T A 0 PASS DP=140;GPV=1;SPV=0.0052956;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:71,9:40,8:31,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5133 chr9 68287357 . G A 0 PASS DP=49;GPV=1;SPV=0.006964;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,5:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5134 chr9 69696380 . A T 0 PASS DP=54;GPV=1;SPV=0.018392;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:12,5:11,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5135 chr9 72132286 . A C 0 PASS DP=60;GPV=1;SPV=0.0026089;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:11,4:13,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5136 chr9 74125462 . G C 0 PASS DP=55;GPV=1;SPV=0.00044867;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,4:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5137 chr9 74319090 . G A 0 PASS DP=53;GPV=1;SPV=0.0032501;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5138 chr9 74361818 . A T 0 PASS DP=68;GPV=1;SPV=4.9557e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:18,5:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5139 chr9 77048262 . C T 0 PASS DP=62;GPV=1;SPV=8.3349e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:6,7:8,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5140 chr9 79695351 . T A 0 PASS DP=63;GPV=1;SPV=0.028109;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:9,5:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5141 chr9 80580189 . C G 0 PASS DP=68;GPV=1;SPV=0.00011357;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:13,7:11,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5142 chr9 81013339 . G C 0 PASS DP=70;GPV=1;SPV=0.00064075;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:12,8:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5143 chr9 83008891 . C CTCATATATATAT 0 PASS DP=18;GPV=1;SPV=0.14706;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,3:5,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5144 chr9 83479785 . G A 0 PASS DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5145 chr9 85700487 . C T 0 PASS DP=68;GPV=1;SPV=0.031142;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:15,1:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5146 chr9 86510989 . T A 0 PASS DP=50;GPV=1;SPV=0.00071247;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:8,8:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5147 chr9 87239049 . G T 0 PASS DP=71;GPV=1;SPV=0.0028443;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:10,3:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5148 chr9 87518485 . T C 0 PASS DP=50;GPV=1;SPV=0.034541;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:8,11:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5149 chr9 88112566 . T C 0 PASS DP=41;GPV=1;SPV=0.1733;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:8,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5150 chr9 89979293 . G GT 0 PASS DP=38;GPV=1;SPV=0.035742;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:13,6:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5151 chr9 90429584 . C A 0 PASS DP=60;GPV=1;SPV=0.064526;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5152 chr9 90526339 . A G 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,2:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5153 chr9 93023795 . CTTT C 0 PASS DP=33;GPV=1;SPV=0.026248;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,7:5,4:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5154 chr9 93074431 . CAAAA C 0 PASS DP=22;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5155 chr9 96727745 . A AT 0 PASS DP=25;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5156 chr9 99841231 . G GA 0 PASS DP=40;GPV=1;SPV=0.008316;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5157 chr9 101181127 . A ATG 0 PASS DP=33;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,4:6,3:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5158 chr9 102099034 . T G 0 PASS DP=63;GPV=1;SPV=0.00046907;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:13,7:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5159 chr9 102208043 . C G 0 PASS DP=60;GPV=1;SPV=0.00035208;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,8:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5160 chr9 103543037 . A T 0 PASS DP=66;GPV=1;SPV=0.0033765;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:9,3:15,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5161 chr9 104528724 . C G 0 PASS DP=54;GPV=1;SPV=0.00088456;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:13,5:7,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5162 chr9 104944790 . A G 0 PASS DP=33;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,2:1,2:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5163 chr9 105162046 . G A 0 PASS DP=29;GPV=1;SPV=0.017149;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,10:3,6:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5164 chr9 105654873 . CTG C 0 PASS DP=41;GPV=1;SPV=0.0024274;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,12:6,9:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5165 chr9 108743292 . ATATG A 0 PASS DP=33;GPV=1;SPV=0.034547;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,6:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5166 chr9 110433364 . CAA C 0 PASS DP=29;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,7:3,4:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5167 chr9 111499821 . CA C 0 PASS DP=22;GPV=1;SPV=0.006192;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,5:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5168 chr9 112515042 . G C 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:15,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5169 chr9 113061748 . C T 0 PASS DP=206;GPV=1;SPV=0.033714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:99,25:32,14:67,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5170 chr9 113257478 . AT A 0 PASS DP=31;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:5,4:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5171 chr9 114660862 . C CT 0 PASS DP=27;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:1,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5172 chr9 115271886 . C CA 0 PASS DP=37;GPV=1;SPV=0.004902;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:2,12:0,7:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5173 chr9 116998569 . CCATA C 0 PASS DP=55;GPV=1;SPV=0.13598;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,1:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5174 chr9 117043907 . C CAAAA 0 PASS DP=36;GPV=1;SPV=0.0043505;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:4,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5175 chr9 117067055 . G C 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,1:10,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5176 chr9 117585579 . T C 0 PASS DP=54;GPV=1;SPV=0.0039611;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:9,11:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5177 chr9 117975199 . T A 0 PASS DP=54;GPV=1;SPV=0.0066857;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,5:11,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5178 chr9 119366504 . G A 0 PASS DP=41;GPV=1;SPV=0.022876;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,10:2,5:2,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5179 chr9 119800001 . C T 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5180 chr9 120020055 . T A 0 PASS DP=75;GPV=1;SPV=0.07519;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:17,1:19,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5181 chr9 121544139 . CATAT C 0 PASS DP=33;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:0,5:0,2:0,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5182 chr9 121858266 . G C 0 PASS DP=63;GPV=1;SPV=0.013337;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:17,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5183 chr9 122727039 . CT C 0 PASS DP=24;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:3,7:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5184 chr9 126511387 . CA C 0 PASS DP=29;GPV=1;SPV=0.04741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,7:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5185 chr9 127021497 . C CA 0 PASS DP=40;GPV=1;SPV=1.904e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,16:3,13:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5186 chr9 127471472 . T TA 0 PASS DP=34;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,5:2,4:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5187 chr9 127713496 . CTT C 0 PASS DP=25;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:5,2:4,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5188 chr9 128083513 . C CTTTT 0 PASS DP=28;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:3,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5189 chr9 130409638 . G T 0 PASS DP=74;GPV=1;SPV=0.0025617;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,4:13,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5190 chr9 132105907 . G A 0 PASS DP=64;GPV=1;SPV=0.0099286;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:14,5:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5191 chr9 132188636 . T C 0 PASS DP=96;GPV=1;SPV=3.9192e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:18,8:18,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5192 chr9 132832063 . GA G 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5193 chr9 134098711 . T A 0 PASS DP=79;GPV=1;SPV=1.8301e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:13,9:14,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5194 chr9 134948374 . T G 0 PASS DP=63;GPV=1;SPV=0.0011495;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:12,7:15,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5195 chr9 136131338 . C CGGG 0 PASS DP=20;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,4:2,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5196 chr9 136150424 . G A 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,1:15,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5197 chr9 136725211 . C CT 0 PASS DP=34;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,6:6,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5198 chr9 136889990 . TGA T 0 PASS DP=37;GPV=1;SPV=5.7121e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,16:3,7:5,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5199 chr9 138129089 . A G 0 PASS DP=57;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,4:10,3:10,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5200 chr9 138144598 . A G 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:10,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5201 chr9 138214206 . T C 0 PASS DP=70;GPV=1;SPV=0.018754;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:17,1:17,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5202 chr9 138237340 . AG A 0 PASS DP=24;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:8,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5203 chrX 2904903 . CT C 0 PASS DP=25;GPV=1;SPV=0.0070433;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:4,8:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5204 chrX 3534618 . C A 0 PASS DP=61;GPV=1;SPV=2.1749e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:5,5:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5205 chrX 3653799 . A T 0 PASS DP=28;GPV=1;SPV=0.074074;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5206 chrX 3740839 . A AAAAAG 0 PASS DP=20;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:4,3:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5207 chrX 6584770 . C T 0 PASS DP=40;GPV=1;SPV=0.040303;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,1:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5208 chrX 8498537 . T C 0 PASS DP=23;GPV=1;SPV=0.031621;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5209 chrX 8594688 . A G 0 PASS DP=21;GPV=1;SPV=0.0017181;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,10:1,7:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5210 chrX 8594703 . TATATATACAC T 0 PASS DP=24;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:3,6:1,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5211 chrX 9404939 . C G 0 PASS DP=116;GPV=1;SPV=0.044225;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:16,6:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5212 chrX 9405966 . G A 0 PASS DP=340;GPV=1;SPV=0.0049026;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:141,19:76,7:65,12
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5213 chrX 9410334 . T C 0 PASS DP=128;GPV=1;SPV=0.035719;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:63,8:21,1:42,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5214 chrX 9411980 . C A 0 PASS DP=281;GPV=1;SPV=0.0018742;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:107,16:49,8:58,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5215 chrX 9973248 . C G 0 PASS DP=71;GPV=1;SPV=3.4015e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,4:11,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5216 chrX 10648510 . G A 0 PASS DP=50;GPV=1;SPV=0.0017074;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,3:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5217 chrX 11411183 . T A 0 PASS DP=17;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,3:0,0:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5218 chrX 11412688 . C A 0 PASS DP=53;GPV=1;SPV=2.2035e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:5,5:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5219 chrX 11679886 . TTTTCTTTC T 0 PASS DP=43;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5220 chrX 13600283 . T C 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:6,1:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5221 chrX 15059829 . G A 0 PASS DP=40;GPV=1;SPV=0.00017781;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,5:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5222 chrX 15398102 . T TG 0 PASS DP=35;GPV=1;SPV=0.00018275;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,9:1,8:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5223 chrX 15746022 . CT C 0 PASS DP=20;GPV=1;SPV=0.0091688;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,6:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5224 chrX 16231503 . C T 0 PASS DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:3,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5225 chrX 16355097 . T C 0 PASS DP=39;GPV=1;SPV=0.040959;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,3:1,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5226 chrX 21945634 . T TCC 0 PASS DP=19;GPV=1;SPV=0.011438;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:0,0:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5227 chrX 22375511 . T TGAGAGAGA 0 PASS DP=33;GPV=1;SPV=0.014934;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5228 chrX 22899014 . ATG A 0 PASS DP=42;GPV=1;SPV=0.020407;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,3:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5229 chrX 23377575 . GGTGT G 0 PASS DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,3:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5230 chrX 23500147 . T TTTTTATTTTATTTTA 0 PASS DP=33;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:1,5:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5231 chrX 24617371 . G GT 0 PASS DP=24;GPV=1;SPV=0.0064996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,9:1,7:3,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5232 chrX 24660678 . C CA 0 PASS DP=35;GPV=1;SPV=0.0098951;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:2,4:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5233 chrX 25828071 . A T 0 PASS DP=45;GPV=1;SPV=0.016117;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,4:4,1:3,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5234 chrX 25998490 . G GCACACACACACACACACACA 0 PASS DP=37;GPV=1;SPV=0.0011899;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,8:3,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5235 chrX 26326024 . ATGTTTGTT A 0 PASS DP=43;GPV=1;SPV=0.013215;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:5,5:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5236 chrX 27975047 . TAC T 0 PASS DP=51;GPV=1;SPV=0.00041615;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,16:4,10:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5237 chrX 28969902 . AAC A 0 PASS DP=49;GPV=1;SPV=0.011818;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5238 chrX 28981090 . CAAAAAAAAAAAAAAAAA C 0 PASS DP=21;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:2,3:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5239 chrX 30638324 . T A 0 PASS DP=46;GPV=1;SPV=0.0021778;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,8:1,2:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5240 chrX 32975346 . C CT 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5241 chrX 34423647 . C A 0 PASS DP=44;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,3:2,2:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5242 chrX 36949507 . C G 0 PASS DP=45;GPV=1;SPV=0.00061448;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,2:6,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5243 chrX 38917230 . A T 0 PASS DP=60;GPV=1;SPV=1.9105e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,8:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5244 chrX 40914902 . A G 0 PASS DP=47;GPV=1;SPV=0.00070944;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:3,7:2,2:1,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5245 chrX 41272377 . G A 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:4,1:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5246 chrX 41290837 . CAA C 0 PASS DP=18;GPV=1;SPV=0.022967;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,5:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5247 chrX 42871500 . C CGTGT 0 PASS DP=29;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5248 chrX 42891118 . T C 0 PASS DP=40;GPV=1;SPV=0.040008;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,4:9,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5249 chrX 42894141 . A C 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5250 chrX 42972776 . T TAGAAAAACAAGATCCGAGAAG 0 PASS DP=52;GPV=1;SPV=0.046756;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,9:11,4:12,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5251 chrX 44594077 . C T 0 PASS DP=44;GPV=1;SPV=0.2381;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,3:1,2:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5252 chrX 44803555 . G C 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:6,10:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5253 chrX 44963440 . A AGT 0 PASS DP=47;GPV=1;SPV=0.15083;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,4:7,3:17,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5254 chrX 47579180 . G A 0 PASS DP=65;GPV=1;SPV=8.8092e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:13,6:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5255 chrX 48529848 . C A 0 PASS DP=57;GPV=1;SPV=6.1566e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:12,7:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5256 chrX 49346058 . T A 0 PASS DP=486;GPV=1;SPV=0.03642;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:234,43:118,26:116,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5257 chrX 49619948 . G A 0 PASS DP=55;GPV=1;SPV=0.043835;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,2:14,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5258 chrX 49619950 . A G 0 PASS DP=58;GPV=1;SPV=0.048259;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,2:12,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5259 chrX 51421220 . C A 0 PASS DP=64;GPV=1;SPV=0.00025408;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:12,3:11,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5260 chrX 52419147 . C G 0 PASS DP=79;GPV=1;SPV=0.00075376;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:16,7:20,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5261 chrX 53023677 . AT A 0 PASS DP=41;GPV=1;SPV=0.02002;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5262 chrX 54226092 . AC A 0 PASS DP=32;GPV=1;SPV=0.00077284;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,13:4,11:2,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5263 chrX 54270399 . CT C 0 PASS DP=41;GPV=1;SPV=0.029934;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5264 chrX 54685643 . T TTC 0 PASS DP=39;GPV=1;SPV=0.040404;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:4,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5265 chrX 54923568 . G C 0 PASS DP=79;GPV=1;SPV=2.6553e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:11,9:19,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5266 chrX 55564766 . T C 0 PASS DP=57;GPV=1;SPV=0.0071969;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:14,6:14,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5267 chrX 56915260 . CAAAAAAAAAAAAAAAA C 0 PASS DP=24;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:4,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5268 chrX 57744654 . G T 0 PASS DP=78;GPV=1;SPV=1.048e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:16,3:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5269 chrX 60240358 . T C 0 PASS DP=69;GPV=1;SPV=0.0091975;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:26,6:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5270 chrX 61341951 . G A 0 PASS DP=80;GPV=1;SPV=0.046535;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:2,1:41,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5271 chrX 62741422 . T A 0 PASS DP=61;GPV=1;SPV=0.0035775;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:13,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5272 chrX 64611760 . A G 0 PASS DP=70;GPV=1;SPV=0.00017112;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:14,6:12,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5273 chrX 64699661 . G T 0 PASS DP=57;GPV=1;SPV=0.0011798;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:15,6:8,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5274 chrX 64793574 . G C 0 PASS DP=73;GPV=1;SPV=0.002842;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:18,5:17,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5275 chrX 65450670 . C CAT 0 PASS DP=24;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,2:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5276 chrX 65810417 . C T 0 PASS DP=68;GPV=1;SPV=0.0055487;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:11,3:20,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5277 chrX 66218774 . C T 0 PASS DP=70;GPV=1;SPV=0.00016675;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,21:8,6:11,15
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5278 chrX 66303397 . A C 0 PASS DP=57;GPV=1;SPV=0.054139;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:10,2:22,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5279 chrX 66472390 . C G 0 PASS DP=81;GPV=1;SPV=0.0021701;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:16,5:20,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5280 chrX 67150890 . A G 0 PASS DP=36;GPV=1;SPV=0.0083333;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:0,3:0,2:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5281 chrX 67150912 . A G 0 PASS DP=34;GPV=1;SPV=0.49123;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,4:9,1:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5282 chrX 67419912 . G C 0 PASS DP=73;GPV=1;SPV=0.00064966;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:12,3:17,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5283 chrX 67992259 . CAAAAAAAA C 0 PASS DP=34;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,8:5,7:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5284 chrX 73061472 . T A 0 PASS DP=78;GPV=1;SPV=0.000163;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:17,5:14,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5285 chrX 73361697 . C CT 0 PASS DP=24;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:5,5:0,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5286 chrX 74744950 . T TC 0 PASS DP=34;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:5,2:7,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5287 chrX 76790727 . C CAAAAAA 0 PASS DP=26;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:9,4:0,0
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5288 chrX 78979489 . T G 0 PASS DP=58;GPV=1;SPV=0.027364;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:13,3:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5289 chrX 79578104 . G A 0 PASS DP=45;GPV=1;SPV=0.066077;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5290 chrX 79748440 . G A 0 PASS DP=56;GPV=1;SPV=0.00010913;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:9,7:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5291 chrX 80039055 . C G 0 PASS DP=62;GPV=1;SPV=0.00027813;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:7,3:16,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5292 chrX 81140559 . CA C 0 PASS DP=29;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,5:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5293 chrX 81773446 . A T 0 PASS DP=53;GPV=1;SPV=6.6326e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,7:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5294 chrX 82101828 . G A 0 PASS DP=58;GPV=1;SPV=0.002634;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:11,3:12,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5295 chrX 83560970 . C T 0 PASS DP=47;GPV=1;SPV=0.048309;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,7:2,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5296 chrX 85615846 . A C 0 PASS DP=55;GPV=1;SPV=0.014806;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:14,2:13,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5297 chrX 86368530 . G A 0 PASS DP=63;GPV=1;SPV=0.0008518;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5298 chrX 86753077 . T C 0 PASS DP=56;GPV=1;SPV=0.14178;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,5:10,2:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5299 chrX 87738329 . AT A 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5300 chrX 87741877 . T A 0 PASS DP=72;GPV=1;SPV=0.0040858;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:13,5:17,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5301 chrX 88399377 . A T 0 PASS DP=68;GPV=1;SPV=0.00040909;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5302 chrX 88501121 . CA C 0 PASS DP=26;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,7:3,6:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5303 chrX 88632183 . A G 0 PASS DP=54;GPV=1;SPV=0.000837;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:13,3:6,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5304 chrX 88674609 . A T 0 PASS DP=51;GPV=1;SPV=0.00016223;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,7:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5305 chrX 89407083 . G C 0 PASS DP=49;GPV=1;SPV=0.005596;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,3:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5306 chrX 89426842 . A ATAT 0 PASS DP=36;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,4:5,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5307 chrX 89426855 . AT A 0 PASS DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,4:7,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5308 chrX 89504923 . C G 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,4:11,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5309 chrX 89755313 . C T 0 PASS DP=43;GPV=1;SPV=0.00012155;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:0,4:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5310 chrX 89783722 . G A 0 PASS DP=35;GPV=1;SPV=6.0385e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:2,5:5,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5311 chrX 89965420 . A T 0 PASS DP=30;GPV=1;SPV=0.020544;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,3:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5312 chrX 89965421 . T C 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,3:4,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5313 chrX 90351880 . G T 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:5,3:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5314 chrX 90950728 . G A 0 PASS DP=80;GPV=1;SPV=0.013018;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:19,5:21,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5315 chrX 93311798 . TA T 0 PASS DP=22;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:3,2:1,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5316 chrX 93452164 . G GTA 0 PASS DP=33;GPV=1;SPV=0.024751;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5317 chrX 94925670 . GAA G 0 PASS DP=27;GPV=1;SPV=0.018634;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:6,4:1,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5318 chrX 96018623 . C CA 0 PASS DP=60;GPV=1;SPV=0.0019356;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,8:12,6:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5319 chrX 96980998 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:11,4:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5320 chrX 97145325 . G A 0 PASS DP=39;GPV=1;SPV=0.037203;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,2:9,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5321 chrX 97161051 . G GT 0 PASS DP=36;GPV=1;SPV=0.0033;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:3,5:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5322 chrX 99836512 . G A 0 PASS DP=55;GPV=1;SPV=0.0015923;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:16,3:7,10
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5323 chrX 100321805 . TC T 0 PASS DP=38;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,8:4,2:4,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5324 chrX 101405236 . C CA 0 PASS DP=37;GPV=1;SPV=0.025362;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:10,5:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5325 chrX 102420569 . T C 0 PASS DP=67;GPV=1;SPV=0.013211;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,4:10,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5326 chrX 102824103 . C CTT 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5327 chrX 107038536 . G GAA 0 PASS DP=30;GPV=1;SPV=0.30409;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,4:7,3:5,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5328 chrX 108444223 . CT C 0 PASS DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,4:3,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5329 chrX 108775705 . ACAT A 0 PASS DP=43;GPV=1;SPV=0.022078;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,4:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5330 chrX 109041056 . T TATA 0 PASS DP=52;GPV=1;SPV=0.13283;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,3:12,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5331 chrX 109057693 . T G 0 PASS DP=41;GPV=1;SPV=0.018356;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,3:5,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5332 chrX 110689536 . C A 0 PASS DP=39;GPV=1;SPV=0.24893;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:18,2:6,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5333 chrX 110689544 . C A 0 PASS DP=40;GPV=1;SPV=0.083717;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:15,3:7,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5334 chrX 111820197 . C T 0 PASS DP=66;GPV=1;SPV=0.036325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:16,2:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5335 chrX 113914381 . TGGGGCCTCCA T 0 PASS DP=71;GPV=1;SPV=0.0020037;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:16,9:18,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5336 chrX 115698647 . G A 0 PASS DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,5:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5337 chrX 115885482 . C T 0 PASS DP=20;GPV=1;SPV=0.049123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5338 chrX 116116510 . A G 0 PASS DP=35;GPV=1;SPV=0.024328;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,2:4,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5339 chrX 116284047 . A G 0 PASS DP=27;GPV=1;SPV=0.034965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,4:1,1:2,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5340 chrX 117233726 . G A 0 PASS DP=57;GPV=1;SPV=0.04058;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5341 chrX 117472419 . CAA C 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,3:7,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5342 chrX 118626065 . C CT 0 PASS DP=34;GPV=1;SPV=0.05132;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5343 chrX 119823558 . C T 0 PASS DP=22;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:4,1:0,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5344 chrX 120582061 . GAA G 0 PASS DP=27;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:3,4:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5345 chrX 120694831 . TTCTCTTTC T 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,2:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5346 chrX 122374580 . C G 0 PASS DP=48;GPV=1;SPV=0.0028662;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,3:10,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5347 chrX 122743892 . CTT C 0 PASS DP=25;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:5,3:2,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5348 chrX 123306392 . A T 0 PASS DP=56;GPV=1;SPV=0.00091169;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:10,3:9,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5349 chrX 124028985 . TTA T 0 PASS DP=47;GPV=1;SPV=0.029938;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,11:9,7:8,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5350 chrX 124028993 . A T 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:4,6:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5351 chrX 124179087 . T TACACACACACACACACACACACACACACACAC 0 PASS DP=36;GPV=1;SPV=0.089257;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5352 chrX 125697474 . C T 0 PASS DP=67;GPV=1;SPV=0.0063951;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:23,4:8,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5353 chrX 126030636 . C A 0 PASS DP=58;GPV=1;SPV=0.0038133;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:11,2:16,11
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5354 chrX 126477462 . C A 0 PASS DP=59;GPV=1;SPV=7.6729e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:11,5:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5355 chrX 126605126 . C G 0 PASS DP=47;GPV=1;SPV=0.0049682;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:5,5:13,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5356 chrX 127192185 . C CA 0 PASS DP=40;GPV=1;SPV=0.047124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:10,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5357 chrX 127533529 . T TAAAA 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,2:5,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5358 chrX 128447366 . T A 0 PASS DP=52;GPV=1;SPV=2.2678e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:8,9:6,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5359 chrX 129058522 . T C 0 PASS DP=61;GPV=1;SPV=0.00068429;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:10,9:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5360 chrX 129368973 . G C 0 PASS DP=28;GPV=1;SPV=0.0047009;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,2:4,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5361 chrX 129606990 . A AGAAG 0 PASS DP=48;GPV=1;SPV=0.074336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,5:12,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5362 chrX 131500587 . G GAAAAGA 0 PASS DP=27;GPV=1;SPV=0.32967;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,3:4,2:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5363 chrX 131861544 . G A 0 PASS DP=70;GPV=1;SPV=0.00039513;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:15,3:11,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5364 chrX 134571038 . T TA 0 PASS DP=54;GPV=1;SPV=0.0029872;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:11,4:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5365 chrX 135523978 . T A 0 PASS DP=71;GPV=1;SPV=0.0019773;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:10,3:14,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5366 chrX 136904766 . T TA 0 PASS DP=40;GPV=1;SPV=0.017286;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,4:7,9
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5367 chrX 138341932 . T A 0 PASS DP=24;GPV=1;SPV=0.011374;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:1,3:4,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5368 chrX 139082520 . G A 0 PASS DP=61;GPV=1;SPV=0.0035775;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,5:13,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5369 chrX 141695017 . A G 0 PASS DP=66;GPV=1;SPV=0.025802;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:12,3:11,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5370 chrX 141790862 . A G 0 PASS DP=57;GPV=1;SPV=0.036947;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:7,1:14,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5371 chrX 142118797 . A AAAAG 0 PASS DP=37;GPV=1;SPV=0.033189;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,5:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5372 chrX 142298163 . C A 0 PASS DP=76;GPV=1;SPV=3.3767e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:18,7:8,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5373 chrX 143689782 . A ATTACCAGTTAGATAACCAAACT 0 PASS DP=58;GPV=1;SPV=0.0034744;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:12,6:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5374 chrX 143689783 . C G 0 PASS DP=59;GPV=1;SPV=0.024998;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:13,6:15,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5375 chrX 144486319 . G A 0 PASS DP=57;GPV=1;SPV=0.019629;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:12,3:18,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5376 chrX 144516420 . G A 0 PASS DP=71;GPV=1;SPV=0.0011981;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:15,7:16,5
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5377 chrX 144668547 . TATGC T 0 PASS DP=37;GPV=1;SPV=0.020668;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,3:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5378 chrX 145443745 . C A 0 PASS DP=51;GPV=1;SPV=0.0074736;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:9,3:9,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5379 chrX 145550923 . C A 0 PASS DP=50;GPV=1;SPV=0.0057104;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,5:10,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5380 chrX 145601392 . C T 0 PASS DP=41;GPV=1;SPV=0.029934;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:14,5:4,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5381 chrX 147036928 . C CT 0 PASS DP=31;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:6,6:3,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5382 chrX 148704244 . TTA T 0 PASS DP=48;GPV=1;SPV=0.031028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,4:8,1
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5383 chrX 149424245 . GCCCAGTAGCCCTACTGGGTGGCTAGA G 0 PASS DP=44;GPV=1;SPV=0.031869;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,2:6,6
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5384 chrX 150327631 . AAAG A 0 PASS DP=61;GPV=1;SPV=0.060295;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5385 chrX 151806088 . A ATGTG 0 PASS DP=45;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,8:4,5:5,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5386 chrX 154088031 . C T 0 PASS DP=50;GPV=1;SPV=0.003465;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,4:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5387 chrX 154941879 . A G 0 PASS DP=45;GPV=1;SPV=0.0091605;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,2:9,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5388 chrX 155470241 . T TATAA 0 PASS DP=96;GPV=1;SPV=0.025403;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:23,11:16,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5389 chrY 11184593 . C A 0 PASS DP=35;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,1:8,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5390 chrY 11185093 . T G 0 PASS DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,3:8,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5391 chrY 11188522 . A T 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:9,3:10,2
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5392 chrY 11221710 . C T 0 PASS DP=68;GPV=1;SPV=0.074416;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:14,3:25,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5393 chrY 11239989 . G A 0 PASS DP=167;GPV=1;SPV=0.043031;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:71,17:54,13:17,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5394 chrY 11247437 . T C 0 PASS DP=122;GPV=1;SPV=0.024624;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:30,4:22,3
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5395 chrY 11267878 . G T 0 PASS DP=83;GPV=1;SPV=0.0041457;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:13,5:25,4
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5396 chrY 11280293 . A T 0 PASS DP=400;GPV=1;SPV=0.015554;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:179,39:80,23:99,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5397 chrY 56834173 . C T 0 PASS DP=160;GPV=1;SPV=0.043963;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:71,12:29,4:42,8
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5398 chrY 56851994 . G A 0 PASS DP=275;GPV=1;SPV=0.043257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:130,27:71,10:59,17
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5399 chrY 56853118 . A C 0 PASS DP=271;GPV=1;SPV=0.013381;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:118,28:61,12:57,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5400 chrY 56864412 . C A 0 PASS DP=533;GPV=1;SPV=0.017044;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:293:258,35:134,19:124,16
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5401 chrY 56870747 . A G 0 PASS DP=258;GPV=1;SPV=0.03366;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:133,18:72,11:61,7
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5402 chrY 56875350 . A C 0 PASS DP=581;GPV=1;SPV=0.025519;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:292:257,35:131,16:126,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5403 chrY 56875498 . C T 0 PASS DP=426;GPV=1;SPV=0.0029475;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:232:201,31:107,12:94,19
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5404 chrY 56875990 . G C 0 PASS DP=420;GPV=1;SPV=0.01275;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:219:191,28:88,15:103,13
aea952be68cb "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit cd8f633245d53cf47eaf860a4e0ae8d806c34419"
artbio
parents:
diff changeset
5405 chrY 56886877 . C T 0 PASS DP=138;GPV=1;SPV=0.014715;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:62,11:26,6:36,5