Mercurial > repos > artbio > mutational_patterns

comparison mutational_patterns.xml @ 27:2c9759c7ba72 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/mutational_patterns commit b9ce1f9ddb27b70eea962c69d8f6fe792bb062eb
author artbio
date Sat, 10 Feb 2024 17:45:11 +0000
parents af5c65ad5317
children 9a33a5a90a2c
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26:af5c65ad5317 27:2c9759c7ba72
1 <tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="3.4.0+galaxy2"> 1 <tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>from genomic variations in vcf files</description> 2 <description>from genomic variations in vcf files</description>
3 <macros>
4 <token name="@TOOL_VERSION@">3.12.0</token>
5 <token name="@VERSION_SUFFIX@">0</token>
6 <token name="@PROFILE@">23.0</token>
7 </macros>
3 <requirements> 8 <requirements>
4 <requirement type="package" version="3.4.0=r41hdfd78af_0">bioconductor-mutationalpatterns</requirement> 9 <requirement type="package" version="@TOOL_VERSION@">bioconductor-mutationalpatterns</requirement>
5 <!--requirement type="package" version="1.1.1l=h7f98852_0">openssl</requirement> --> 10 <requirement type="package" version="3.4.4">r-ggplot2</requirement>
6 <requirement type="package" version="3.3.6=r41hc72bb7e_0">r-ggplot2</requirement> 11 <requirement type="package" version="1.7.4">r-optparse</requirement>
7 <requirement type="package" version="1.7.1=r41hc72bb7e_0">r-optparse</requirement> 12 <requirement type="package" version="0.2.21">r-rjson</requirement>
8 <requirement type="package" version="0.2.21=r41h7525677_1">r-rjson</requirement> 13 <requirement type="package" version="0.21.0">r-nmf</requirement>
9 <requirement type="package" version="0.21.0=r41h03ef668_1004">r-nmf</requirement> 14 <requirement type="package" version="2.3">r-gridextra</requirement>
10 <requirement type="package" version="2.3=r41hc72bb7e_1003">r-gridextra</requirement> 15 <requirement type="package" version="1.4.3">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement>
11 <requirement type="package" version="1.4.3=r41hdfd78af_4">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement> 16 <requirement type="package" version="1.4.5">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement>
12 <requirement type="package" version="1.4.4=r41hdfd78af_0">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement>
13 <!-- 17 <!--
14 install more bioconda genomes 18 install more bioconda genomes
15 bioconductor-bsgenome.mmusculus.ucsc.mm9 19 bioconductor-bsgenome.mmusculus.ucsc.mm9
16 bioconductor-bsgenome.mmusculus.ucsc.mm10 20 bioconductor-bsgenome.mmusculus.ucsc.mm10
17 --> 21 -->