Mercurial > repos > artbio > mutational_patterns

changeset 27:2c9759c7ba72 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/mutational_patterns commit b9ce1f9ddb27b70eea962c69d8f6fe792bb062eb
author artbio
date Sat, 10 Feb 2024 17:45:11 +0000
parents af5c65ad5317
children 9a33a5a90a2c
files mutational_patterns.xml
diffstat 1 files changed, 14 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/mutational_patterns.xml	Tue Jul 12 17:44:09 2022 +0000
+++ b/mutational_patterns.xml	Sat Feb 10 17:45:11 2024 +0000
@@ -1,15 +1,19 @@
-<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="3.4.0+galaxy2">
+<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>from genomic variations in vcf files</description>
+    <macros>
+        <token name="@TOOL_VERSION@">3.12.0</token>
+        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@PROFILE@">23.0</token>
+    </macros>
     <requirements>
-        <requirement type="package" version="3.4.0=r41hdfd78af_0">bioconductor-mutationalpatterns</requirement>
-        <!--requirement type="package" version="1.1.1l=h7f98852_0">openssl</requirement> -->
-        <requirement type="package" version="3.3.6=r41hc72bb7e_0">r-ggplot2</requirement>
-        <requirement type="package" version="1.7.1=r41hc72bb7e_0">r-optparse</requirement>
-        <requirement type="package" version="0.2.21=r41h7525677_1">r-rjson</requirement>
-        <requirement type="package" version="0.21.0=r41h03ef668_1004">r-nmf</requirement>
-        <requirement type="package" version="2.3=r41hc72bb7e_1003">r-gridextra</requirement>
-        <requirement type="package" version="1.4.3=r41hdfd78af_4">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement>
-        <requirement type="package" version="1.4.4=r41hdfd78af_0">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">bioconductor-mutationalpatterns</requirement>
+        <requirement type="package" version="3.4.4">r-ggplot2</requirement>
+        <requirement type="package" version="1.7.4">r-optparse</requirement>
+        <requirement type="package" version="0.2.21">r-rjson</requirement>
+        <requirement type="package" version="0.21.0">r-nmf</requirement>
+        <requirement type="package" version="2.3">r-gridextra</requirement>
+        <requirement type="package" version="1.4.3">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement>
+        <requirement type="package" version="1.4.5">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement>
 <!--
 install more bioconda genomes
 bioconductor-bsgenome.mmusculus.ucsc.mm9