Mercurial > repos > artbio > mutational_patterns
changeset 26:af5c65ad5317 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit bc7fab3050541155f0c3e15b7f448a1802155670
| author | artbio |
|---|---|
| date | Tue, 12 Jul 2022 17:44:09 +0000 |
| parents | b00fef2b1c2c |
| children | 2c9759c7ba72 |
| files | mutational_patterns.R mutational_patterns.xml test-data/cosmic_output1.pdf test-data/cosmic_output_v3.pdf test-data/denovo_1.RData test-data/denovo_output1.pdf test-data/spectrum_output1.pdf test-data/user_output.pdf |
| diffstat | 8 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/mutational_patterns.R Wed Jul 06 11:43:09 2022 +0000 +++ b/mutational_patterns.R Tue Jul 12 17:44:09 2022 +0000 @@ -489,7 +489,9 @@ # xlim(rev(levels(factor(cos_sim_ori_rec$sample)))) + theme_bw() + theme(panel.grid.minor.y = element_blank(), - panel.grid.major.y = element_blank()) + + panel.grid.major.y = element_blank(), + axis.text.x = element_text(angle = 90, vjust = 0.5, hjust = 1) + ) + # Add cut.off line geom_hline(aes(yintercept = .95)) grid.arrange(p9, top = textGrob("Similarity between true profiles and profiles reconstructed with elementary signatures", gp = gpar(fontsize = 12, font = 3)))
--- a/mutational_patterns.xml Wed Jul 06 11:43:09 2022 +0000 +++ b/mutational_patterns.xml Tue Jul 12 17:44:09 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="3.4.0+galaxy1"> +<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="3.4.0+galaxy2"> <description>from genomic variations in vcf files</description> <requirements> <requirement type="package" version="3.4.0=r41hdfd78af_0">bioconductor-mutationalpatterns</requirement>