Mercurial > repos > artbio > small_rna_maps

comparison small_rna_maps.xml @ 11:a561a71bd7d7 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit c24bbb6d53574eb1c1eb8d219cf2a39a9ed5b3ff
author artbio
date Tue, 06 Mar 2018 06:11:55 -0500
parents c3fb2a864526
children d33263e6e812
comparison
equal deleted inserted replaced
10:c3fb2a864526 11:a561a71bd7d7
1 <tool id="small_rna_maps" name="small_rna_maps" version="2.4.1"> 1 <tool id="small_rna_maps" name="small_rna_maps" version="2.4.3">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.11.2=py27_0">numpy</requirement> 4 <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
5 <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement> 5 <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement>
6 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement> 6 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
265 <output file="size.tab" name="output_tab" /> 265 <output file="size.tab" name="output_tab" />
266 <output file="count.tab" name="extra_output_tab" /> 266 <output file="count.tab" name="extra_output_tab" />
267 <output file="size-count_normed.pdf" name="output_pdf" /> 267 <output file="size-count_normed.pdf" name="output_pdf" />
268 </test> 268 </test>
269 <test> 269 <test>
270 <param name="inputs" value="input_single_chr.bam" ftype="bam"/>
271 <param name="minsize" value="0" />
272 <param name="maxsize" value="10000" />
273 <param name="cluster" value="0" />
274 <param name="plots_options_selector" value="two_plot" />
275 <param name="first_plot" value="Counts" />
276 <param name="extra_plot" value="Coverage" />
277 <param name="normalization" value="1 1" />
278 <output file="count_1_chr.tab" name="output_tab" />
279 <output file="coverage_1_chr.tab" name="extra_output_tab" />
280 <output file="counts_coverage_1.pdf" name="output_pdf" />
281 </test>
282 <test>
283 <param name="inputs" value="input_5_chr.bam" ftype="bam"/>
284 <param name="minsize" value="0" />
285 <param name="maxsize" value="10000" />
286 <param name="cluster" value="0" />
287 <param name="plots_options_selector" value="two_plot" />
288 <param name="first_plot" value="Counts" />
289 <param name="extra_plot" value="Coverage" />
290 <param name="normalization" value="1 1" />
291 <output file="count_5_chr.tab" name="output_tab" />
292 <output file="coverage_5_chr.tab" name="extra_output_tab" />
293 <output file="counts_coverage_5.pdf" name="output_pdf" />
294 </test>
295 <test>
296 <param name="inputs" value="input_single_chr.bam" ftype="bam"/>
297 <param name="minsize" value="0" />
298 <param name="maxsize" value="10000" />
299 <param name="cluster" value="0" />
300 <param name="plots_options_selector" value="one_plot" />
301 <param name="first_plot" value="Counts" />
302 <param name="normalization" value="1 1" />
303 <output file="count_1_chr.tab" name="output_tab" />
304 <output file="count_1.pdf" name="output_pdf" />
305 </test>
306 <test>
270 <param name="inputs" value="input1.bam,input2.bam" ftype="bam"/> 307 <param name="inputs" value="input1.bam,input2.bam" ftype="bam"/>
271 <param name="minsize" value="0" /> 308 <param name="minsize" value="0" />
272 <param name="cluster" value="0" /> 309 <param name="cluster" value="0" />
273 <param name="maxsize" value="10000" /> 310 <param name="maxsize" value="10000" />
274 <param name="plots_options_selector" value="one_plot" /> 311 <param name="plots_options_selector" value="one_plot" />