Mercurial > repos > artbio > yac_clipper

comparison yac.xml @ 2:da08e89abd18 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
author artbio
date Sat, 13 Oct 2018 17:09:16 -0400
parents 7c913274e22a
children 94d67b195acd
comparison
equal deleted inserted replaced
1:7c913274e22a 2:da08e89abd18
1 <tool id="yac" name="Clip adapter" version="2.0.1"> 1 <tool id="yac" name="Clip adapter" version="2.1.1">
2 <description /> 2 <description />
3 <command interpreter="python">yac.py --input $input 3 <command detect_errors="exit_code"><![CDATA[
4 --output $output 4 python $__tool_directory__/yac.py
5 --output_format "$out_format" 5 --input $input
6 --adapter_to_clip $clip_source.clip_sequence 6 --output $output
7 --min $min 7 --output_format "$out_format"
8 --max $max 8 --adapter_to_clip $clip_source.clip_sequence
9 --Nmode $Nmode 9 --min $min
10 </command> 10 --max $max
11 --Nmode $Nmode
12 ]]></command>
11 <inputs> 13 <inputs>
12 <param format="fastq" label="Source file" name="input" type="data" /> 14 <param format="fastq" label="Source file" name="input" type="data" />
13 <param label="min size" name="min" size="4" type="integer" value="15" /> 15 <param label="min size" name="min" size="4" type="integer" value="15" />
14 <param label="max size" name="max" size="4" type="integer" value="36" /> 16 <param label="max size" name="max" size="4" type="integer" value="36" />
15 <param label="Select output format" name="out_format" type="select"> 17 <param label="Select output format" name="out_format" type="select">
89 91
90 **Output** 92 **Output**
91 93
92 A fastq or fasta file containing clipped sequences satisfying the selected criteria. 94 A fastq or fasta file containing clipped sequences satisfying the selected criteria.
93 95
94 </help> 96 </help>
95 <citations /> 97 <citations />
96 </tool> 98 </tool>