Mercurial > repos > artbio > yac_clipper

annotate yac.xml @ 2:da08e89abd18 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
author artbio
date Sat, 13 Oct 2018 17:09:16 -0400
parents 7c913274e22a
children 94d67b195acd
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
1 <tool id="yac" name="Clip adapter" version="2.1.1">
0
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
2 <description />
2
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
3 <command detect_errors="exit_code"><![CDATA[
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
4 python $__tool_directory__/yac.py
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
5 --input $input
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
6 --output $output
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
7 --output_format "$out_format"
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
8 --adapter_to_clip $clip_source.clip_sequence
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
9 --min $min
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
10 --max $max
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
11 --Nmode $Nmode
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
12 ]]></command>
0
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
13 <inputs>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
14 <param format="fastq" label="Source file" name="input" type="data" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
15 <param label="min size" name="min" size="4" type="integer" value="15" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
16 <param label="max size" name="max" size="4" type="integer" value="36" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
17 <param label="Select output format" name="out_format" type="select">
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
18 <option selected="true" value="fasta">Fasta format</option>
1
7c913274e22a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 7edb6f8c9744ec9bccee42aecf80207f0984330c
artbio
parents: 0
diff changeset
19 <option value="fastq">Fastq (Sanger) format</option>
0
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
20 </param>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
21 <param label="Accept reads containing N?" name="Nmode" type="select">
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
22 <option selected="True" value="accept">accept</option>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
23 <option value="reject">reject</option>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
24 </param>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
25 <conditional name="clip_source">
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
26 <param help="Built-in adapters or User-provided" label="Source" name="clip_source_list" type="select">
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
27 <option selected="True" value="prebuilt">Use a built-in adapter (select from the list below)</option>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
28 <option value="user">Use custom sequence</option>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
29 </param>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
30 <when value="prebuilt">
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
31 <param help="if your adapter is not listed, input your own sequence" label="Select Adapter to clip" name="clip_sequence" type="select">
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
32 <option value="TCGTATGCCGTCTTCTGCTTG">Solexa TCGTATGCCGTCTTCTGCTTG</option>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
33 <option value="ATCTCGTATGCCGTCTTCTGCTT">Illumina ATCTCGTATGCCGTCTTCTGCTT</option>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
34 <option selected="True" value="TGGAATTCTCGGGTGCCAAG">Illumina TruSeq TGGAATTCTCGGGTGCCAAG</option>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
35 <option value="CTGTAGGCACCATCAATCGT">IdT CTGTAGGCACCATCAATCGT</option>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
36 </param>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
37 </when>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
38 <when value="user">
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
39 <param label="Enter your Sequence" name="clip_sequence" size="35" type="text" value="GAATCC" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
40 </when>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
41 </conditional>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
42 </inputs>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
43 <outputs>
1
7c913274e22a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 7edb6f8c9744ec9bccee42aecf80207f0984330c
artbio
parents: 0
diff changeset
44 <data format_source="input" metadata_source="input" name="output" label="Clipping of ${input.name}">
0
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
45 <change_format>
1
7c913274e22a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 7edb6f8c9744ec9bccee42aecf80207f0984330c
artbio
parents: 0
diff changeset
46 <when input="out_format" value="fasta" format="fasta" />
0
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
47 </change_format>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
48 </data>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
49 </outputs>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
50 <tests>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
51 <test>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
52 <param ftype="fastqsanger" name="input" value="yac.fastq" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
53 <param name="min" value="18" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
54 <param name="max" value="29" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
55 <param name="clip_source_list" value="prebuilt" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
56 <param name="clip_sequence" value="ATCTCGTATGCCGTCTTCTGCTT" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
57 <param name="Nmode" value="accept" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
58 <output file="yac.out" name="output" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
59 </test>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
60 <test>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
61 <param ftype="fastqsanger" name="input" value="yac.fastq" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
62 <param name="min" value="18" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
63 <param name="max" value="29" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
64 <param name="clip_source_list" value="prebuilt" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
65 <param name="clip_sequence" value="ATCTCGTATGCCGTCTTCTGCTT" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
66 <param name="Nmode" value="accept" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
67 <param name="out_format" value="fastq" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
68 <output file="yac_fastq.out" name="output" />
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
69 </test>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
70 </tests>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
71 <help>
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
72
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
73 **What it does**
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
74
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
75 + Clips adapter sequences
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
76 + Renumbers sequence headers
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
77 + Filters sequences on their size
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
78 + Filters sequences containing unknown nucleotides (optional)
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
79
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
80 -------
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
81
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
82 **Inputs**
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
83
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
84 1. A fastq file of reads to be clipped
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
85 2. Select the size of the reads to be kept
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
86 3. Select an output format when input is a fastq file (this may be fastq or fastq)
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
87 4. Select whether you wish or do not wish to keep clipped sequences with unknown nucleotides (N)
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
88 5. Select a pre-built adapter sequence or enter your own sequence (at least 7 nucleotides long)
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
89
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
90 -------
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
91
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
92 **Output**
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
93
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
94 A fastq or fasta file containing clipped sequences satisfying the selected criteria.
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
95
2
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
96 </help>
da08e89abd18 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
artbio
parents: 1
diff changeset
97 <citations />
0
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
98 </tool>