Mercurial > repos > astroteam > astronomical_archives

annotate astronomical_archives.py @ 0:0ddfc343f9f9 draft

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planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
author astroteam
date Mon, 04 Sep 2023 14:20:34 +0000
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children 667fc28d803c
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0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
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1 import json
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2 import os
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3 import sys
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4 import urllib
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5 from urllib import request
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6
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7 import pyvo
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8 from pyvo import DALAccessError, DALQueryError, DALServiceError
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9 from pyvo import registry
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10
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11 MAX_ALLOWED_ENTRIES = 100
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12 MAX_REGISTRIES_TO_SEARCH = 100
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13
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14
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15 class Service:
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16 # https://pyvo.readthedocs.io/en/latest/api/pyvo.registry.Servicetype.html
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17
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18 services = {
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19 'TAP': 'tap',
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20 'SIA': 'sia',
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21 'SIA2': 'sia2',
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22 'SPECTRUM': 'spectrum',
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23 'SCS': 'scs',
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24 'LINE': 'line'
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25 }
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26
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27 supported_services = {
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28 'TAP': 'tap'
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29 }
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30
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31 def __init__(self):
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32 pass
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33
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34 @staticmethod
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35 def is_service_supported(service_type) -> bool:
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36 is_supported = True
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37
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38 if service_type not in Service.services.keys():
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39 is_supported = False
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40 elif service_type not in Service.supported_services.keys():
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41 is_supported = False
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42
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43 return is_supported
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44
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45
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46 class Waveband:
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47 # https://pyvo.readthedocs.io/en/latest/api/pyvo.registry.Waveband.html
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48 # https://www.ivoa.net/rdf/messenger/2020-08-26/messenger.html
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49
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50 wavebands = {
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51 'Extreme UV': 'EUV',
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52 'Gamma ray': 'Gamma-ray',
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53 'Infrared': 'Infrared',
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54 'Millimeter': 'Millimeter',
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55 'Neutrino': 'Neutrino',
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56 'Optical': 'Optical',
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57 'Photon': 'Photon',
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58 'Radio': 'Radio',
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59 'Ultra violet': 'UV',
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60 'X-ray': 'X-ray'
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61 }
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62
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63 def __init__(self):
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64 pass
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65
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66 @staticmethod
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67 def is_waveband_supported(waveband) -> bool:
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68 is_supported = True
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69
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70 if waveband not in Waveband.wavebands.keys():
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71 is_supported = False
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72
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73 return is_supported
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74
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75
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76 class TapArchive:
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77 # https://www.ivoa.net/documents/ObsCore/20170509/REC-ObsCore-v1.1-20170509
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78
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79 service_type = Service.services['TAP']
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80
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81 def __init__(self,
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82 id=1,
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83 title="Unknown title",
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84 name="Unknown name",
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85 access_url=""):
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86
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87 self.id = id,
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88 self.title = title,
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89 self.name = name,
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90 self.access_url = access_url
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91 self.initialized = False
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92 self.archive_service = None
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astroteam
parents:
diff changeset
93 self.tables = None
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diff changeset
94
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parents:
diff changeset
95 def get_resources(self,
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diff changeset
96 query,
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parents:
diff changeset
97 number_of_results,
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parents:
diff changeset
98 url_field='access_url'):
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parents:
diff changeset
99
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parents:
diff changeset
100 resource_list_hydrated = []
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diff changeset
101
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diff changeset
102 error_message = None
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diff changeset
103
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104 if self.initialized:
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parents:
diff changeset
105
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astroteam
parents:
diff changeset
106 try:
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parents:
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107 raw_resource_list = self.archive_service.search(query)
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diff changeset
108
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109 for i, resource in enumerate(raw_resource_list):
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parents:
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110 if i < number_of_results:
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111 resource_list_hydrated.append(
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112 self._get_resource_object(resource))
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113 else:
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114 break
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115
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116 except DALQueryError:
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117 if self.has_obscore_table():
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118 error_message = "Error in query -> " + query
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119 Logger.create_action_log(
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120 Logger.ACTION_ERROR,
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121 Logger.ACTION_TYPE_DOWNLOAD,
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122 error_message)
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123 else:
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124 error_message = "No obscore table in the archive"
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125 Logger.create_action_log(
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126 Logger.ACTION_ERROR,
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127 Logger.ACTION_TYPE_DOWNLOAD,
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128 error_message)
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129
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130 except DALServiceError:
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131 error_message = "Error communicating with the service"
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132 Logger.create_action_log(
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133 Logger.ACTION_ERROR,
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134 Logger.ACTION_TYPE_DOWNLOAD,
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135 error_message)
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136
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137 except Exception:
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138 error_message = "Unknow error while querying the service"
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139 Logger.create_action_log(
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140 Logger.ACTION_ERROR,
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141 Logger.ACTION_TYPE_DOWNLOAD,
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142 error_message)
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143
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144 return resource_list_hydrated, error_message
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145
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146 def _get_resource_object(self, resource):
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147 resource_hydrated = {}
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148
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149 for key, value in resource.items():
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150 resource_hydrated[key] = value
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151
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152 return resource_hydrated
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153
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154 def initialize(self):
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155 error_message = None
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156
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157 try:
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158 self._get_service()
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159
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160 if self.archive_service:
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161 self._set_archive_tables()
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162 self.initialized = True
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163
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164 except DALAccessError:
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165 error_message = \
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166 "A connection to the service could not be established"
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167 Logger.create_action_log(
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168 Logger.ACTION_ERROR,
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169 Logger.ACTION_TYPE_ARCHIVE_CONNECTION,
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170 error_message)
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171
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172 except Exception:
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173 error_message = "Unknow error while initializing TAP service"
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174 Logger.create_action_log(
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175 Logger.ACTION_ERROR,
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176 Logger.ACTION_TYPE_ARCHIVE_CONNECTION,
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177 error_message)
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178
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179 return self.initialized, error_message
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180
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181 def _get_service(self):
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182 if self.access_url:
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183 self.archive_service = pyvo.dal.TAPService(self.access_url)
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184
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185 def _set_archive_tables(self):
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186
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187 self.tables = []
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188
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189 for table in self.archive_service.tables:
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190 archive_table = {
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191 'name': table.name,
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192 'type': table.type,
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193 'fields': None
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194 }
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195
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196 fields = []
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197
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198 for table_field in table.columns:
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199 field = {
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200 'name': table_field.name,
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201 'description': table_field.description,
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202 'unit': table_field.unit,
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203 'datatype': table_field.datatype.content
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204 }
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205
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206 fields.append(field)
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207
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208 archive_table['fields'] = fields
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209
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210 self.tables.append(archive_table)
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211
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212 def _is_query_valid(self, query) -> bool:
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213 is_valid = True
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214
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215 attribute_from = 'from'
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216 attribute_where = 'where'
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217
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218 idx_from = query.index(attribute_from)
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219 idx_where = query.index(attribute_where)
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220
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221 table_name = ''
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222
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223 for idx in range(idx_from + len('from') + 1, idx_where):
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224 table_name = table_name + query[idx]
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225
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226 if not next(
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227 (item for item in self.tables if
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228 item["name"] == table_name),
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229 False):
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230
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231 is_valid = False
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232
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233 return is_valid
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234
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235 def has_obscore_table(self) -> bool:
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236 has_obscore_table = self._has_table("ivoa.obscore")
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237
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238 return has_obscore_table
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239
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240 def _has_table(self, table_name) -> bool:
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241 _has_table = False
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242
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243 _has_table = next(
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244 (item for item in self.tables if item["name"] == table_name),
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245 False)
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246
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247 return _has_table
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248
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249 def get_archive_name(self, archive_type):
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diff changeset
250 try:
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251 if archive_type == 'registry':
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252 name = str(self.title).strip("',()")
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253 else:
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254 name = self.access_url
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255 except Exception:
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256 name = 'Unknown archive title'
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257
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258 return name
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259
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260
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261 class RegistrySearchParameters:
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262
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263 def __init__(self, keyword=None, waveband=None, service_type=None):
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264 self.keyword = keyword
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265 self.waveband = waveband
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266 self.service_type = service_type
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267
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268 def get_parameters(self):
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269
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270 parameters = {
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271 'keywords': '',
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272 'waveband': '',
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273 'service_type': ''
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274 }
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275
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276 if self.keyword:
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277 parameters['keywords'] = self.keyword
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278
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279 if Waveband.is_waveband_supported(self.waveband):
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280 parameters['waveband'] = \
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281 Waveband.wavebands[self.waveband]
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282
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283 if Service.is_service_supported(self.service_type):
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284 parameters['service_type'] = \
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285 Service.services[self.service_type]
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286 else:
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287 parameters['service_type'] = Service.services['TAP']
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288
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289 return parameters
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290
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291
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292 class Registry:
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293
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294 def __init__(self):
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295 pass
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296
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297 @staticmethod
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298 def search_registries(rsp: RegistrySearchParameters,
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299 number_of_registries):
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300
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301 parameters = rsp.get_parameters()
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302
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303 keywords = parameters['keywords']
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304 waveband = parameters['waveband']
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305 service_type = parameters['service_type']
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306
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307 if not waveband:
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308 registry_list = registry.search(
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309 keywords=keywords,
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310 servicetype=service_type)
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311 else:
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312 registry_list = registry.search(
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313 keywords=keywords,
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314 waveband=waveband,
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315 servicetype=service_type)
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316
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317 if registry_list:
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318 registry_list = Registry._get_registries_from_list(
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319 registry_list,
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320 number_of_registries)
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321
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322 return registry_list
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323
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324 @staticmethod
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325 def _get_registries_from_list(registry_list, number_of_registries):
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326
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327 archive_list = []
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328
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329 for i, ivoa_registry in enumerate(registry_list):
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330 if i < number_of_registries:
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331 archive = TapArchive(ivoa_registry.standard_id,
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332 ivoa_registry.res_title,
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333 ivoa_registry.short_name,
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334 ivoa_registry.access_url)
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335
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336 archive_list.append(archive)
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337
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338 return archive_list
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339
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340
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341 class TapQuery:
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342
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343 def __init__(self, query):
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344 self.raw_query = query
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345
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346 def get_query(self):
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347 return urllib.parse.unquote(self.raw_query).replace("+", " ")
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348
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349
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350 class BaseADQLQuery:
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351
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352 def __init__(self):
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353 pass
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354
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355 def _get_order_by_clause(self, order_type):
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356 order_by_clause = 'ORDER BY ' + order_type
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357
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358 return order_by_clause
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359
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360 def _get_where_clause(self, parameters):
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361 where_clause = ''
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362 is_first_statement = True
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363
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364 for key, value in parameters.items():
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365
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366 if value != '':
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367 statement = str(key) + ' = ' + '\'' + str(value) + '\' '
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368
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369 if is_first_statement:
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370 is_first_statement = False
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371 where_clause += 'WHERE '
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372 else:
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373 statement = 'AND ' + statement
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374
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
375 where_clause += statement
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
376
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
377 return where_clause
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
378
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
379
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
380 class ToolRunner:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
381
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
382 def __init__(self,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
383 run_parameters,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
384 output,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
385 output_csv,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
386 output_html,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
387 output_basic_html,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
388 output_error):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
389
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
390 self._raw_parameters_path = run_parameters
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
391 self._json_parameters = json.load(open(run_parameters, "r"))
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
392 self._archive_type = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
393 self._query_type = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
394 self._archives = []
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
395 self._adql_query = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
396 self._services_access_url = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
397 self._url_field = 'access_url'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
398 self._number_of_files = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
399 self._is_initialised = False
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
400
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
401 self._csv_file = False
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
402 self._image_file = False
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
403 self._html_file = False
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
404 self._basic_html_file = False
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
405
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
406 self._output = output
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
407 self._output_csv = output_csv
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
408 self._output_html = output_html
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
409 self._output_basic_html = output_basic_html
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
410 self._output_error = output_error
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
411
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
412 self._set_run_main_parameters()
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
413 self._is_initialised, error_message = self._set_archive()
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
414
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
415 if self._is_initialised and error_message is None:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
416 self._set_query()
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
417 self._set_output()
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
418
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
419 def _set_run_main_parameters(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
420
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
421 qs = "query_section"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
422 qsl = "query_selection"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
423
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
424 self._archive_type = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
425 self._json_parameters['archive_selection']['archive_type']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
426 self._query_type = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
427 self._json_parameters[qs][qsl]['query_type']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
428
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
429 def _set_archive(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
430
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
431 error_message = None
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
432
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
433 if self._archive_type == 'archive':
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
434 self._service_access_url =\
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
435 self._json_parameters['archive_selection']['archive']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
436
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
437 self._archives.append(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
438 TapArchive(access_url=self._service_access_url))
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
439
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
440 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
441 keyword = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
442 self._json_parameters['archive_selection']['keyword']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
443 waveband = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
444 self._json_parameters['archive_selection']['wavebands']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
445 service_type = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
446 self._json_parameters['archive_selection']['service_type']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
447
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
448 rsp = RegistrySearchParameters(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
449 keyword=keyword,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
450 waveband=waveband,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
451 service_type=service_type)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
452
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
453 archive_list = Registry.search_registries(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
454 rsp,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
455 MAX_REGISTRIES_TO_SEARCH)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
456
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
457 if len(archive_list) >= 1:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
458 self._archives = archive_list
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
459 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
460 error_message = "no archive matching search parameters"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
461 Logger.create_action_log(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
462 Logger.ACTION_ERROR,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
463 Logger.ACTION_TYPE_ARCHIVE_CONNECTION,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
464 error_message)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
465
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
466 if error_message is None:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
467
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
468 self._archives[:] = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
469 [archive for archive in self._archives if
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
470 archive.initialize()[0]]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
471
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
472 if len(self._archives) >= 1:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
473 return True, None
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
474 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
475 return False, \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
476 "no archive matching search" \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
477 " parameters could be initialized"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
478
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
479 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
480 return False, error_message
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
481
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
482 def _set_query(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
483
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
484 qs = 'query_section'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
485 qsl = 'query_selection'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
486
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
487 if self._query_type == 'obscore_query':
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
488
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
489 dataproduct_type = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
490 self._json_parameters[qs][qsl]['dataproduct_type']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
491 obs_collection = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
492 self._json_parameters[qs][qsl]['obs_collection']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
493 obs_title = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
494 self._json_parameters[qs][qsl]['obs_title']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
495 obs_id = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
496 self._json_parameters[qs][qsl]['obs_id']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
497 facility_name = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
498 self._json_parameters[qs][qsl]['facility_name']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
499 instrument_name = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
500 self._json_parameters[qs][qsl]['instrument_name']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
501 em_min = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
502 self._json_parameters[qs][qsl]['em_min']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
503 em_max = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
504 self._json_parameters[qs][qsl]['em_max']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
505 target_name = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
506 self._json_parameters[qs][qsl]['target_name']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
507 obs_publisher_id = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
508 self._json_parameters[qs][qsl]['obs_publisher_id']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
509 s_fov = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
510 self._json_parameters[qs][qsl]['s_fov']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
511 calibration_level = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
512 self._json_parameters[qs][qsl]['calibration_level']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
513 t_min = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
514 self._json_parameters[qs][qsl]['t_min']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
515 t_max = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
516 self._json_parameters[qs][qsl]['t_max']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
517 order_by = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
518 self._json_parameters[qs][qsl]['order_by']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
519
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
520 obscore_query_object = ADQLObscoreQuery(dataproduct_type,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
521 obs_collection,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
522 obs_title,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
523 obs_id,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
524 facility_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
525 instrument_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
526 em_min,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
527 em_max,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
528 target_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
529 obs_publisher_id,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
530 s_fov,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
531 calibration_level,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
532 t_min,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
533 t_max,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
534 order_by)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
535
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
536 self._adql_query = obscore_query_object.get_query()
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
537
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
538 elif self._query_type == 'raw_query':
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
539
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
540 wc = 'where_clause'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
541
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
542 tap_table = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
543 self._json_parameters[qs][qsl]['table']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
544
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
545 where_field = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
546 self._json_parameters[qs][qsl][wc]['where_field']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
547 where_condition = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
548 self._json_parameters[qs][qsl][wc]['where_condition']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
549
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
550 self._url_field = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
551 self._json_parameters[qs][qsl]['url_field']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
552
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
553 self._adql_query = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
554 ADQLTapQuery().get_query(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
555 tap_table,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
556 where_field,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
557 where_condition)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
558 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
559 self._adql_query = ADQLObscoreQuery.base_query
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
560
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
561 def _set_output(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
562 self._number_of_files = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
563 int(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
564 self._json_parameters['output_section']['number_of_files']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
565 )
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
566
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
567 if self._number_of_files < 1:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
568 self._number_of_files = 1
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
569 elif self._number_of_files > 100:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
570 self._number_of_files = MAX_ALLOWED_ENTRIES
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
571
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
572 output_selection = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
573 self._json_parameters['output_section']['output_selection']
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
574
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
575 if output_selection is not None:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
576 if 'c' in output_selection:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
577 self._csv_file = True
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
578 if 'i' in output_selection:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
579 self._image_file = True
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
580 if 'h' in output_selection:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
581 self._html_file = True
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
582 if 'b' in output_selection:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
583 self._basic_html_file = True
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
584
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
585 def _validate_json_parameters(self, json_parameters):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
586 self._json_parameters = json.load(open(json_parameters, "r"))
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
587
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
588 def run(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
589 if self._is_initialised:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
590 error_message = None
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
591 file_url = []
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
592
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
593 archive_name = self._archives[0].get_archive_name(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
594 self._archive_type)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
595
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
596 for archive in self._archives:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
597 _file_url, error_message = archive.get_resources(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
598 self._adql_query,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
599 self._number_of_files,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
600 self._url_field)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
601
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
602 file_url.extend(_file_url)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
603
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
604 if len(file_url) >= int(self._number_of_files):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
605 file_url = file_url[:int(self._number_of_files)]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
606 break
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
607
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
608 if file_url:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
609
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
610 if self._csv_file:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
611 FileHandler.write_urls_to_output(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
612 file_url,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
613 self._output_csv,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
614 self._url_field)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
615
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
616 if self._image_file:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
617
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
618 try:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
619 fits_file = FileHandler.download_file_from_url(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
620 file_url[0][self._url_field])
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
621
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
622 FileHandler.write_file_to_output(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
623 fits_file,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
624 self._output, "wb")
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
625
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
626 log_message = "from url " +\
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
627 file_url[0][self._url_field]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
628
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
629 Logger.create_action_log(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
630 Logger.ACTION_SUCCESS,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
631 Logger.ACTION_TYPE_DOWNLOAD,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
632 log_message)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
633
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
634 except Exception:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
635 error_message = "from url " + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
636 file_url[0][self._url_field]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
637
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
638 Logger.create_action_log(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
639 Logger.ACTION_ERROR,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
640 Logger.ACTION_TYPE_DOWNLOAD,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
641 error_message)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
642
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
643 for i, url in enumerate(file_url[1:], start=1):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
644 try:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
645 fits_file = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
646 FileHandler.download_file_from_url(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
647 url[self._url_field])
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
648
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
649 FileHandler.write_file_to_subdir(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
650 fits_file,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
651 FileHandler.get_file_name_from_url(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
652 url[self._url_field]))
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
653
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
654 log_message = "from url " + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
655 url[self._url_field]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
656
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
657 Logger.create_action_log(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
658 Logger.ACTION_SUCCESS,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
659 Logger.ACTION_TYPE_DOWNLOAD,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
660 log_message)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
661
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
662 except Exception:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
663 error_message = "from url " + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
664 url[self._url_field]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
665
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
666 Logger.create_action_log(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
667 Logger.ACTION_ERROR,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
668 Logger.ACTION_TYPE_DOWNLOAD,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
669 error_message)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
670
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
671 if self._html_file:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
672 html_file = OutputHandler.generate_html_output(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
673 file_url,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
674 archive_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
675 self._adql_query)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
676
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
677 FileHandler.write_file_to_output(html_file,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
678 self._output_html)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
679
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
680 if self._basic_html_file:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
681 html_file = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
682 OutputHandler.generate_basic_html_output(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
683 file_url,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
684 archive_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
685 self._adql_query)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
686
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
687 FileHandler.write_file_to_output(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
688 html_file,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
689 self._output_basic_html)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
690
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
691 summary_file = Logger.create_log_file(archive_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
692 self._adql_query)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
693 summary_file += "\n Tool run executed with success"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
694
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
695 FileHandler.write_file_to_output(summary_file,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
696 self._output_error)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
697
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
698 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
699
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
700 summary_file = Logger.create_log_file(archive_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
701 self._adql_query)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
702
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
703 if error_message is None:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
704 summary_file += \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
705 "\n No resources matching parameters found"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
706 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
707 summary_file += error_message
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
708
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
709 FileHandler.write_file_to_output(summary_file,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
710 self._output_error)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
711
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
712 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
713 summary_file = Logger.create_log_file("Archive",
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
714 self._adql_query)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
715
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
716 summary_file += "Unable to initialize archive"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
717
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
718 FileHandler.write_file_to_output(summary_file,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
719 self._output_error)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
720
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
721
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
722 class ADQLObscoreQuery(BaseADQLQuery):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
723 order_by_field = {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
724 'size': 'access_estsize',
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
725 'collection': 'obs_collection',
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
726 'object': 'target_name'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
727 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
728
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
729 base_query = 'SELECT TOP ' + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
730 str(MAX_ALLOWED_ENTRIES) + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
731 ' * FROM ivoa.obscore '
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
732
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
733 def __init__(self,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
734 dataproduct_type,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
735 obs_collection,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
736 obs_title,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
737 obs_id,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
738 facility_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
739 instrument_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
740 em_min,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
741 em_max,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
742 target_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
743 obs_publisher_id,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
744 s_fov,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
745 calibration_level,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
746 t_min,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
747 t_max,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
748 order_by):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
749
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
750 super().__init__()
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
751
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
752 if calibration_level == 'none':
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
753 calibration_level = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
754
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
755 if order_by == 'none':
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
756 order_by = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
757
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
758 if t_min == 'None' or t_min is None:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
759 t_min = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
760
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
761 if t_max == 'None' or t_max is None:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
762 t_max = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
763
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
764 if em_min == 'None' or em_min is None:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
765 em_min = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
766
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
767 if em_max == 'None' or em_max is None:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
768 em_max = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
769
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
770 if dataproduct_type == 'none' or dataproduct_type is None:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
771 dataproduct_type = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
772
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
773 self.parameters = {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
774 'dataproduct_type': dataproduct_type,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
775 'obs_collection': obs_collection,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
776 'obs_title': obs_title,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
777 'obs_id': obs_id,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
778 'facility_name': facility_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
779 'instrument_name': instrument_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
780 'em_min': em_min,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
781 'em_max': em_max,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
782 'target_name': target_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
783 'obs_publisher_id': obs_publisher_id,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
784 's_fov': s_fov,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
785 'calibration_level': calibration_level,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
786 't_min': t_min,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
787 't_max': t_max
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
788 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
789
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
790 self.order_by = order_by
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
791
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
792 def get_query(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
793 return ADQLObscoreQuery.base_query + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
794 self.get_where_statement() + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
795 self.get_order_by_statement()
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
796
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
797 def get_order_by_statement(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
798 if self.order_by != '':
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
799 return self._get_order_by_clause(self.order_by)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
800 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
801 return ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
802
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
803 def _get_order_by_clause(self, order_type):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
804
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
805 obscore_order_type = ADQLObscoreQuery.order_by_field[order_type]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
806
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
807 return super()._get_order_by_clause(obscore_order_type)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
808
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
809 def get_where_statement(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
810 return self._get_where_clause(self.parameters)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
811
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
812 def _get_where_clause(self, parameters):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
813 return super()._get_where_clause(parameters)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
814
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
815
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
816 class ADQLTapQuery(BaseADQLQuery):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
817 base_query = 'SELECT TOP '+str(MAX_ALLOWED_ENTRIES)+' * FROM '
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
818
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
819 def __init__(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
820 super().__init__()
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
821
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
822 def get_order_by_clause(self, order_type):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
823 return super()._get_order_by_clause(order_type)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
824
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
825 def get_query(self, table, where_field, where_condition):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
826 if where_field != '' and where_condition != '':
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
827 return ADQLTapQuery.base_query + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
828 str(table) + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
829 ' WHERE ' + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
830 str(where_field) + ' = ' + '\'' + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
831 str(where_condition) + '\''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
832 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
833 return ADQLTapQuery.base_query + str(table)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
834
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
835
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
836 class HTMLReport:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
837 _html_report_base_header = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
838 _html_report_base_body = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
839 _html_report_base_footer = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
840 _html_report_base_script = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
841
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
842 def __init__(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
843 pass
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
844
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
845
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
846 class OutputHandler:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
847
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
848 def __init__(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
849 pass
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
850
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
851 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
852 def generate_html_output(urls_data, archive_name, adql_query):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
853 return OutputHandler.html_header + \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
854 OutputHandler.generate_html_content(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
855 urls_data,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
856 archive_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
857 adql_query,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
858 div_attr='class="title"',
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
859 table_attr='class="fl-table"')
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
860
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
861 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
862 def generate_basic_html_output(urls_data,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
863 archive_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
864 adql_query, ):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
865 return OutputHandler.generate_html_content(urls_data,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
866 archive_name,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
867 adql_query)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
868
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
869 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
870 def generate_html_content(urls_data, archive_name, adql_query,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
871 div_attr="", table_attr="border='1'"):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
872 html_file = \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
873 f"""
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
874 <div {div_attr}>
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
875 <h2>Resources Preview archive:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
876 <span>
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
877 {archive_name}
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
878 </span>
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
879 </h2>
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
880 <span>ADQL query : {adql_query}</span>
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
881 </div>"""
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
882
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
883 html_file += f'<table {table_attr}><thead><tr>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
884
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
885 for key in Utils.collect_resource_keys(urls_data):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
886 html_file += '<th>' + str(key) + '</th>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
887
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
888 html_file += '</thead></tr><tbody>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
889
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
890 for resource in urls_data:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
891 html_file += '<tr>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
892
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
893 for key, value in resource.items():
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
894 html_file += f'<td>{value}</td>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
895
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
896 html_file += '<td>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
897 for preview_key in \
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
898 ['preview', 'preview_url', 'postcard_url']:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
899 if preview_key in resource:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
900 html_file += (
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
901 '<details><summary>Preview</summary>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
902 f'<img src="{resource[preview_key]}"/>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
903 '</details>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
904 )
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
905 html_file += '</td>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
906 html_file += '</tr>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
907
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
908 html_file += '</tbody></table>'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
909 return html_file
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
910
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
911 html_header = """ <head><style>
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
912
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
913 details {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
914 padding: 10px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
915 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
916
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
917 .table-wrapper {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
918 margin: 10px 70px 70px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
919 box-shadow: 0px 35px 50px rgba( 0, 0, 0, 0.2 );
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
920 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
921
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
922 .fl-table {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
923 border-radius: 5px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
924 font-size: 12px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
925 font-weight: normal;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
926 border: none;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
927 border-collapse: collapse;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
928 width: 100%;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
929 max-width: 100%;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
930 white-space: nowrap;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
931 background-color: white;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
932 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
933
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
934 .fl-table td, .fl-table th {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
935 text-align: center;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
936 padding: 8px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
937 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
938
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
939 .fl-table td {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
940 border: 1px solid #999999;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
941 font-size: 15px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
942 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
943
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
944 .fl-table thead th {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
945 color: #ffffff;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
946 background: #4FC3A1;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
947 border: 1px solid #999999;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
948 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
949
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
950
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
951 .fl-table thead th:nth-child(odd) {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
952 color: #ffffff;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
953 background: #324960;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
954 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
955
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
956 .fl-table tr:nth-child(even) {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
957 background: #F8F8F8;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
958 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
959
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
960 .title h2 {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
961 text-align: center;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
962 font-size: 22px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
963 font-weight: 700; color:#202020;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
964 text-transform: uppercase;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
965 word-spacing: 1px; letter-spacing:2px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
966 margin-bottom: 50px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
967 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
968
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
969 .title h2 span {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
970 padding-top: 40px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
971 text-transform: none;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
972 font-size:.80em;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
973 font-weight: bold;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
974 font-family: "Playfair Display","Bookman",serif;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
975 color:#999;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
976 letter-spacing:-0.005em;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
977 word-spacing:1px;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
978 letter-spacing:none;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
979 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
980
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
981 .title h1:before {
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
982 background-color: #dfdfdf;
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
983 }
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
984
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
985 </style></head>"""
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
986
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
987
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
988 class FileHandler:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
989
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
990 def __init__(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
991 pass
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
992
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
993 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
994 def download_file_from_url(file_url):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
995 with request.urlopen(file_url) as response:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
996 fits_file = response.read()
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
997
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
998 return fits_file
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
999
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1000 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1001 def write_file_to_output(file, output, write_type="w"):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1002 with open(output, write_type) as file_output:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1003 file_output.write(file)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1004
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1005 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1006 def write_urls_to_output(urls: [], output, access_url="access_url"):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1007 with open(output, "w") as file_output:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1008 for url in urls:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1009 try:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1010 file_output.write(url[access_url] + ',')
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1011 except Exception:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1012 error_message = "url field not found for url"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1013 Logger.create_action_log(
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1014 Logger.ACTION_ERROR,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1015 Logger.ACTION_TYPE_WRITE_URL,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1016 error_message)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1017
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1018 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1019 def write_file_to_subdir(file, index):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1020 dir = os.getcwd()
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1021
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1022 dir += '/fits'
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1023
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1024 upload_dir = os.path.join(dir, str(index) + '.fits')
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1025
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1026 with open(upload_dir, "wb") as file_output:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1027 file_output.write(file)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1028
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1029 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1030 def get_file_name_from_url(url, index=None):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1031 url_parts = url.split('/')
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1032
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1033 file_name = ''
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1034
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1035 try:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1036 if (url_parts[-1]) != '':
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1037 file_name = url_parts[-1]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1038 elif len(url_parts) > 1:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1039 file_name = url_parts[-2]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1040 except Exception:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1041 file_name = 'archive file '
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1042
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1043 return file_name
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1044
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1045
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1046 class Utils:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1047
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1048 def __init__(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1049 pass
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1050
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1051 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1052 def collect_resource_keys(urls_data: list) -> list:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1053 """
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1054 Collect all the keys from the resources,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1055 keeping the order in the order of key appearance in the resources
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1056 """
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1057
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1058 resource_keys = []
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1059 for resource in urls_data:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1060 for key in resource.keys():
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1061 if key not in resource_keys:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1062 resource_keys.append(key)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1063 return resource_keys
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1064
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1065
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1066 class Logger:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1067 _logs = []
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1068
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1069 ACTION_SUCCESS = 1
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1070 ACTION_ERROR = 2
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1071
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1072 ACTION_TYPE = 1
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1073 INFO_TYPE = 2
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1074
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1075 ACTION_TYPE_DOWNLOAD = 1
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1076 ACTION_TYPE_ARCHIVE_CONNECTION = 2
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1077 ACTION_TYPE_WRITE_URL = 3
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1078 ACTION_TYPE_WRITE_FILE = 4
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1079
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1080 def __init__(self):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1081 pass
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1082
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1083 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1084 def create_action_log(outcome, action, message) -> bool:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1085
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1086 is_log_created = False
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1087 log = ""
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1088
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1089 if action == Logger.ACTION_TYPE_DOWNLOAD:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1090 if outcome == Logger.ACTION_SUCCESS:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1091 log += "Success downloading file : " + message
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1092 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1093 log += "Error downloading file : " + message
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1094
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1095 is_log_created = True
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1096 elif action == Logger.ACTION_TYPE_ARCHIVE_CONNECTION:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1097 if outcome == Logger.ACTION_SUCCESS:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1098 log += "Success connecting to archive : " + message
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1099 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1100 log += "Error connecting to archive : " + message
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1101
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1102 is_log_created = True
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1103 elif action == Logger.ACTION_TYPE_WRITE_URL:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1104 if outcome == Logger.ACTION_SUCCESS:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1105 log += "Success writing url to file : " + message
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1106 else:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1107 log += "Error writing to file : " + message
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1108
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1109 is_log_created = True
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1110
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1111 if is_log_created:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1112 Logger._insert_log(Logger.ACTION_TYPE, log)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1113
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1114 return is_log_created
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1115
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1116 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
astroteam
parents:
diff changeset
1117 def create_info_log(message):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1118 pass
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1119
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diff changeset
1120 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1121 def _insert_log(type, log):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1122 Logger._logs.append(log)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1123
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diff changeset
1124 @staticmethod
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1125 def create_log_file(archive_name, query):
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1126 log_file = ""
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1127
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1128 log_file += "Run summary for archive : " + archive_name + "\n"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1129 log_file += "With query : " + query + "\n"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1130
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diff changeset
1131 for log in Logger._logs:
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1132 log_file += log + "\n"
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1133
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diff changeset
1134 return log_file
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1135
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1136
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1137 if __name__ == "__main__":
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1138 output = sys.argv[1]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1139 output_csv = sys.argv[2]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1140 output_html = sys.argv[3]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1141 output_basic_html = sys.argv[4]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1142 output_error = sys.argv[5]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1143
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1144 inputs = sys.argv[6]
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1145
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1146 tool_runner = ToolRunner(inputs,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1147 output,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1148 output_csv,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1149 output_html,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1150 output_basic_html,
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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diff changeset
1151 output_error)
0ddfc343f9f9 planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ commit d68858614f92df46c58724928d918e989d916db0
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1152
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1153 tool_runner.run()