Mercurial > repos > astroteam > hess_astro_tool

annotate Lightcurve.py @ 0:02e4bb4fa10c draft

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planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
author astroteam
date Mon, 19 Feb 2024 10:56:44 +0000
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children 593c4b45eda5
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02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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1 #!/usr/bin/env python
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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2 # coding: utf-8
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3
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4 # flake8: noqa
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5
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6 import json
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7 import os
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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8 import shutil
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9
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10 import matplotlib.pyplot as plt
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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11 import numpy as np
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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12 from astropy.coordinates import SkyCoord
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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13 from astropy.io import fits
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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14 from astropy.time import Time
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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15 from numpy import sqrt
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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16 from oda_api.data_products import ODAAstropyTable, PictureProduct
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17 from oda_api.json import CustomJSONEncoder
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18
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19 if os.path.exists("hess_dl3_dr1.tar.gz") == False:
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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20 get_ipython().system( # noqa: F821
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21 "wget https://zenodo.org/record/1421099/files/hess_dl3_dr1.tar.gz"
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22 )
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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23 get_ipython().system("tar -zxvf hess_dl3_dr1.tar.gz") # noqa: F821
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24
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25 src_name = "Crab" # http://odahub.io/ontology#AstrophysicalObject
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26 RA = 83.628700 # http://odahub.io/ontology#PointOfInterestRA
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27 DEC = 22.014700 # http://odahub.io/ontology#PointOfInterestDEC
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28 T1 = "2003-10-09T13:16:00.0" # http://odahub.io/ontology#StartTime
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29 T2 = "2005-10-10T13:16:00.0" # http://odahub.io/ontology#EndTime
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30 Radius = 2.5 # http://odahub.io/ontology#AngleDegrees
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31 R_s = 0.2 # http://odahub.io/ontology#AngleDegrees
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32 Emin = 100.0 # http://odahub.io/ontology#Energy_GeV
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33 Emax = 10000.0 # http://odahub.io/ontology#Energy_GeV
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34 NTbins = 10 # http://odahub.io/ontology#Integer
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35
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36 _galaxy_wd = os.getcwd()
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37
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38 with open("inputs.json", "r") as fd:
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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39 inp_dic = json.load(fd)
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40 if "_data_product" in inp_dic.keys():
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41 inp_pdic = inp_dic["_data_product"]
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42 else:
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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43 inp_pdic = inp_dic
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44
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45 for vn, vv in inp_pdic.items():
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46 if vn != "_selector":
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47 globals()[vn] = type(globals()[vn])(vv)
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48
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49 T1 = Time(T1, format="isot", scale="utc").mjd
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50 T2 = Time(T2, format="isot", scale="utc").mjd
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51 message = ""
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52 RA_pnts = []
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53 DEC_pnts = []
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54 DL3_files = []
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55 OBSIDs = []
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56 Tstart = []
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57 Tstop = []
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58 flist = os.listdir("data")
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59 for f in flist:
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60 if f[-7:] == "fits.gz":
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61 DL3_files.append(f)
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62 OBSIDs.append(int(f[20:26]))
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63 hdul = fits.open("data/" + f)
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64 RA_pnts.append(float(hdul[1].header["RA_PNT"]))
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65 DEC_pnts.append(float(hdul[1].header["DEC_PNT"]))
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66 Tstart.append(
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67 Time(
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68 hdul[1].header["DATE-OBS"] + "T" + hdul[1].header["TIME-OBS"],
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69 format="isot",
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70 scale="utc",
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71 ).mjd
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72 )
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73 Tstop.append(
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74 Time(
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75 hdul[1].header["DATE-END"] + "T" + hdul[1].header["TIME-END"],
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76 format="isot",
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77 scale="utc",
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78 ).mjd
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79 )
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80 hdul.close()
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81
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82 Coords_s = SkyCoord(RA, DEC, unit="degree")
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83 COORDS_pnts = SkyCoord(RA_pnts, DEC_pnts, unit="degree")
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84 seps = COORDS_pnts.separation(Coords_s).deg
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85
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86 mask = np.where((seps < Radius) & (Tstart > T1) & (Tstop < T2))[0]
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astroteam
parents:
diff changeset
87 OBSlist = []
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
88 Tbegs = []
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
89 for i in mask:
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
90 OBSlist.append(DL3_files[i])
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
91 Tbegs.append(Tstart[i])
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
92 if len(OBSlist) == 0:
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
93 message = "No data found"
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
94 raise RuntimeError("No data found")
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
95 message
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
96
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
97 Tbins = np.linspace(T1, T2, NTbins + 1)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
98 Tmin = Tbins[:-1]
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astroteam
parents:
diff changeset
99 Tmax = Tbins[1:]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
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100 Tmean = (Tmin + Tmax) / 2.0
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
101 Tbins
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102
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astroteam
parents:
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103 flux = np.zeros(NTbins)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
104 flux_err = np.zeros(NTbins)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
105 flux_b = np.zeros(NTbins)
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astroteam
parents:
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106 flux_b_err = np.zeros(NTbins)
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astroteam
parents:
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107 Expos = np.zeros(NTbins)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
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108 for count, f in enumerate(OBSlist):
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
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109 hdul = fits.open("data/" + f)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
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110 RA_pnt = hdul[1].header["RA_PNT"]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
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111 DEC_pnt = hdul[1].header["DEC_PNT"]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
112 Texp = hdul[1].header["LIVETIME"]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
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113 Trun_start = hdul[1].header["TSTART"]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
114 dRA = RA - RA_pnt
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astroteam
parents:
diff changeset
115 dDEC = DEC - DEC_pnt
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astroteam
parents:
diff changeset
116 RA_b = RA_pnt - dRA
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astroteam
parents:
diff changeset
117 DEC_b = DEC_pnt - dDEC
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
118 Coords_b = SkyCoord(RA_b, DEC_b, unit="degree")
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
119 Coords_pnt = SkyCoord(RA_pnt, DEC_pnt, unit="degree")
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
120 dist = Coords_pnt.separation(Coords_s).deg
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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parents:
diff changeset
121
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astroteam
parents:
diff changeset
122 ev = hdul["EVENTS"].data
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
123 ev_ra = ev["RA"]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
124 ev_dec = ev["DEC"]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
125 ev_en = ev["ENERGY"]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
126 ev_time = (ev["TIME"] - Trun_start) / 86400.0 + Tbegs[count]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
127 print(ev_time[0])
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
128 ev_coords = SkyCoord(ev_ra, ev_dec, unit="degree")
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
129 sep_s = ev_coords.separation(Coords_s).deg
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
130 sep_b = ev_coords.separation(Coords_b).deg
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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parents:
diff changeset
131
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astroteam
parents:
diff changeset
132 hdu = hdul["AEFF"].data
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
133 EEmin = hdu["ENERG_LO"][0]
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astroteam
parents:
diff changeset
134 EEmax = hdu["ENERG_HI"][0]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
135 EE = sqrt(EEmin * EEmax)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
136 EEbins = np.concatenate((EEmin, [EEmax[-1]]))
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
137 AA = hdu["EFFAREA"][0] + 1e-10
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
138 Thmin = hdu["THETA_LO"][0]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
139 Thmax = hdu["THETA_HI"][0]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
140 ind = np.argmin((Thmin - dist) ** 2)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
141 AA = AA[ind] * Texp * 1e4
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
142 mask = np.where((sep_s < R_s))
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
143 cts1 = np.histogram2d(ev_time[mask], ev_en[mask], bins=[Tbins, EEbins])[0]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
144 mask = sep_b < R_s
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
145 cts2 = np.histogram2d(ev_time[mask], ev_en[mask], bins=[Tbins, EEbins])[0]
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
146 src = cts1 - cts2
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
147 src_err = sqrt(cts1 + cts2)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
148 flux += np.sum(src / AA, axis=1)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
149 flux_err += np.sum(src_err / AA, axis=1)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
150 flux_b += np.sum(cts2 / AA, axis=1)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
151 flux_b_err += np.sum(sqrt(cts2) / AA, axis=1)
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
152 hdul.close()
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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parents:
diff changeset
153
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astroteam
parents:
diff changeset
154 if message == "":
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
155 plt.errorbar(
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
156 Tmean,
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
157 flux,
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
158 yerr=flux_err,
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astroteam
parents:
diff changeset
159 xerr=[Tmean - Tmin, Tmax - Tmean],
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
160 linestyle="none",
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
161 label="source",
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
162 )
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
163 plt.errorbar(
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
164 Tmean,
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
165 flux_b,
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
166 yerr=flux_b_err,
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astroteam
parents:
diff changeset
167 xerr=[Tmean - Tmin, Tmax - Tmean],
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
168 linestyle="none",
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astroteam
parents:
diff changeset
169 label="background",
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
170 )
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
171 plt.xlabel("Time, MJD")
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
astroteam
parents:
diff changeset
172 plt.ylabel("Flux, cts/cm$^2$s")
02e4bb4fa10c planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools commit 2991f65b25d4e6d1b69458603fce917adff40f94
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parents:
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173 plt.yscale("log")
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174 ymin = min(min(flux - flux_err), min(flux_b - flux_b_err))
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175 ymax = max(max(flux + flux_err), max(flux_b + flux_b_err))
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176 plt.ylim(ymin / 2.0, 2 * ymax)
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177 plt.legend(loc="lower left")
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178 plt.savefig("Lightcurve.png", format="png")
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179
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180 if message == "":
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181 bin_image = PictureProduct.from_file("Lightcurve.png")
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182 from astropy.table import Table
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183
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184 data = [Tmean, Tmin, Tmax, flux, flux_err, flux_b, flux_b_err]
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185 names = (
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186 "Tmean[MJD]",
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187 "Tmin[MJD]",
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188 "Tmax[MJD]",
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189 "Flux[counts/cm2s]",
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190 "Flux_error[counts/cm2s]",
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191 "Background[counts/cm2s]",
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192 "Background_error[counts/cm2s]",
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193 )
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194 lc = ODAAstropyTable(Table(data, names=names))
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195
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196 picture = bin_image # http://odahub.io/ontology#ODAPictureProduct
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197 lightcurve_astropy_table = lc # http://odahub.io/ontology#ODAAstropyTable
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198
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199 # output gathering
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200 _galaxy_meta_data = {}
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201 _oda_outs = []
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202 _oda_outs.append(("out_Lightcurve_picture", "picture_galaxy.output", picture))
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203 _oda_outs.append(
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204 (
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205 "out_Lightcurve_lightcurve_astropy_table",
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206 "lightcurve_astropy_table_galaxy.output",
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207 lightcurve_astropy_table,
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208 )
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209 )
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210
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211 for _outn, _outfn, _outv in _oda_outs:
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212 _galaxy_outfile_name = os.path.join(_galaxy_wd, _outfn)
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213 if isinstance(_outv, str) and os.path.isfile(_outv):
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214 shutil.move(_outv, _galaxy_outfile_name)
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215 _galaxy_meta_data[_outn] = {"ext": "_sniff_"}
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216 elif getattr(_outv, "write_fits_file", None):
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217 _outv.write_fits_file(_galaxy_outfile_name)
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218 _galaxy_meta_data[_outn] = {"ext": "fits"}
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219 elif getattr(_outv, "write_file", None):
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220 _outv.write_file(_galaxy_outfile_name)
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221 _galaxy_meta_data[_outn] = {"ext": "_sniff_"}
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222 else:
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223 with open(_galaxy_outfile_name, "w") as fd:
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224 json.dump(_outv, fd, cls=CustomJSONEncoder)
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225 _galaxy_meta_data[_outn] = {"ext": "json"}
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226
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227 with open(os.path.join(_galaxy_wd, "galaxy.json"), "w") as fd:
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228 json.dump(_galaxy_meta_data, fd)
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229 print("*** Job finished successfully ***")