|
0
|
1 <tool id="bed2gff" name="Converts file extension from bed to gff" version="2.0.2">
|
|
|
2 <description>from one extension to another</description>
|
|
|
3 <requirements>
|
|
|
4 <requirement type="package" version="11.0.11">openjdk</requirement>
|
|
|
5 </requirements>
|
|
|
6 <command>
|
|
|
7 <![CDATA[
|
|
|
8
|
|
|
9 java -jar $__tool_directory__/ScriptManager-v0.13-dev.jar coordinate-manipulation bed-to-gff '${input}' -o '${output}' 2>&1
|
|
|
10 ]]>
|
|
|
11 </command>
|
|
|
12 <inputs>
|
|
|
13 <param name="input" type="data" format="bed" label="input file in bed format"/>
|
|
|
14 </inputs>
|
|
|
15 <outputs>
|
|
|
16 <data name="output" type="data" format="gff" label="output file in gff format"/>
|
|
|
17 </outputs>
|
|
|
18 <help>
|
|
|
19 **What it does**
|
|
|
20
|
|
|
21 This tool converts a file extension from bed to gff
|
|
|
22
|
|
|
23 -----
|
|
|
24 **Example**
|
|
|
25
|
|
|
26 Input File::
|
|
|
27 input_file.bed
|
|
|
28
|
|
|
29 Converting to gff returns this::
|
|
|
30 output_file.gff
|
|
|
31
|
|
|
32
|
|
|
33 </help>
|
|
|
34 </tool>
|
