Mercurial > repos > audreysackey > gff2bed
comparison gff2bed.xml @ 0:fa40c647dc35 draft default tip
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| author | audreysackey |
|---|---|
| date | Fri, 10 Dec 2021 23:16:51 +0000 |
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| -1:000000000000 | 0:fa40c647dc35 |
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| 1 <tool id="bed2gff" name="Converts file extension from bed to gff" version="2.0.2"> | |
| 2 <description>from one extension to another</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="11.0.11">openjdk</requirement> | |
| 5 </requirements> | |
| 6 <command> | |
| 7 <![CDATA[ | |
| 8 | |
| 9 java -jar $__tool_directory__/ScriptManager-v0.13-dev.jar coordinate-manipulation bed-to-gff '${input}' -o '${output}' 2>&1 | |
| 10 ]]> | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <param name="input" type="data" format="bed" label="input file in bed format"/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data name="output" type="data" format="gff" label="output file in gff format"/> | |
| 17 </outputs> | |
| 18 <help> | |
| 19 **What it does** | |
| 20 | |
| 21 This tool converts a file extension from bed to gff | |
| 22 | |
| 23 ----- | |
| 24 **Example** | |
| 25 | |
| 26 Input File:: | |
| 27 input_file.bed | |
| 28 | |
| 29 Converting to gff returns this:: | |
| 30 output_file.gff | |
| 31 | |
| 32 | |
| 33 </help> | |
| 34 </tool> |