<tool id="bed2gff" name="Converts file extension from bed to gff" version="2.0.2">
<description>from one extension to another</description>
<requirements>
    <requirement type="package" version="11.0.11">openjdk</requirement>
</requirements>
<command>
<![CDATA[

java -jar $__tool_directory__/ScriptManager-v0.13-dev.jar coordinate-manipulation bed-to-gff '${input}' -o '${output}' 2>&1
]]>
</command>
<inputs>
     <param name="input" type="data" format="bed" label="input file in bed format"/>
     </inputs>
<outputs>
    <data name="output" type="data" format="gff" label="output file in gff format"/>
</outputs>
<help>
**What it does**

This tool converts a file extension from bed to gff

-----
**Example**

Input File::
input_file.bed

Converting to gff returns this::
output_file.gff


    </help>
</tool>