Mercurial > repos > avowinkel > gatk
comparison tool_dependencies.xml @ 0:b80ff7f43ad1 draft default tip
planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/tools/gatk commit 8764cef47529f6285678af4ca24b66d0fe516b88-dirty
| author | avowinkel |
|---|---|
| date | Thu, 24 Sep 2015 12:10:01 -0400 |
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| children |
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| -1:000000000000 | 0:b80ff7f43ad1 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <set_environment version="1.0"> | |
| 4 <environment_variable action="set_to" name="GATK_PATH">/mnt/galaxy/tools/GATK/3.4-0</environment_variable> | |
| 5 </set_environment> | |
| 6 <!-- | |
| 7 Use GATK_SITE_OPTIONS to set additional parameters that should be inserted in every GATK call. | |
| 8 The intended use case was to prohibit GATK to collect and send data. | |
| 9 For example: | |
| 10 | |
| 11 -et "NO_ET" -K "/data/gatk_key_file" ##ET no phone home | |
| 12 --> | |
| 13 <set_environment version="1.0"> | |
| 14 <environment_variable action="set_to" name="GATK_SITE_OPTIONS"> </environment_variable> | |
| 15 </set_environment> | |
| 16 <package name="package_r_for_gatk_3_4_0" version="3.1.2.1"> | |
| 17 <repository changeset_revision="49c62e9b71ad" name="package_r_for_gatk_3_4_0" owner="avowinkel" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 18 </package> | |
| 19 </tool_dependency> |