Mercurial > repos > avowinkel > gatk

view tool_dependencies.xml @ 0:b80ff7f43ad1 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/tools/gatk commit 8764cef47529f6285678af4ca24b66d0fe516b88-dirty
author avowinkel
date Thu, 24 Sep 2015 12:10:01 -0400
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable action="set_to" name="GATK_PATH">/mnt/galaxy/tools/GATK/3.4-0</environment_variable>
    </set_environment>
    <!--
    Use GATK_SITE_OPTIONS to set additional parameters that should be inserted in every GATK call.
    The intended use case was to prohibit GATK to collect and send data.
    For example:

    -et "NO_ET" -K "/data/gatk_key_file" ##ET no phone home
    -->
    <set_environment version="1.0">
        <environment_variable action="set_to" name="GATK_SITE_OPTIONS"> </environment_variable>
    </set_environment>
    <package name="package_r_for_gatk_3_4_0" version="3.1.2.1">
        <repository changeset_revision="49c62e9b71ad" name="package_r_for_gatk_3_4_0" owner="avowinkel" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>