comparison tool_dependencies.xml @ 0:b80ff7f43ad1 draft default tip

planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/tools/gatk commit 8764cef47529f6285678af4ca24b66d0fe516b88-dirty
author avowinkel
date Thu, 24 Sep 2015 12:10:01 -0400
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-1:000000000000 0:b80ff7f43ad1
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <set_environment version="1.0">
4 <environment_variable action="set_to" name="GATK_PATH">/mnt/galaxy/tools/GATK/3.4-0</environment_variable>
5 </set_environment>
6 <!--
7 Use GATK_SITE_OPTIONS to set additional parameters that should be inserted in every GATK call.
8 The intended use case was to prohibit GATK to collect and send data.
9 For example:
10
11 -et "NO_ET" -K "/data/gatk_key_file" ##ET no phone home
12 -->
13 <set_environment version="1.0">
14 <environment_variable action="set_to" name="GATK_SITE_OPTIONS"> </environment_variable>
15 </set_environment>
16 <package name="package_r_for_gatk_3_4_0" version="3.1.2.1">
17 <repository changeset_revision="49c62e9b71ad" name="package_r_for_gatk_3_4_0" owner="avowinkel" toolshed="https://toolshed.g2.bx.psu.edu" />
18 </package>
19 </tool_dependency>