--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime/per_library_stats.xml	Wed Jun 06 16:40:30 2012 -0400
@@ -0,0 +1,35 @@
+<tool id="per_library_stats" name="per_library_stats" version="2.0.0">
+ <description>Calculate per library statistics</description>
+ <requirements>
+  <requirement type="binary">per_library_stats.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  per_library_stats.py
+  --otu_table_fp=$otu_table_fp
+  #if $mapfile != None and $mapfile.__str__ != 'None' and $mapfile.__str__ != '':
+  --mapfile=$mapfile
+  #end if
+  --outputfile=$outputfile
+ </command>
+ <inputs>
+  <param name="otu_table_fp" type="data" format="txt" label="otu_table_fp"
+   help="path to the input OTU table (i.e., the output from make_otu_table.py) [REQUIRED]"/>
+  <param name="mapfile" type="data" optional="true" format="txt" label="mapfile" help="A mapping file. If included, this script will modify the mapping file to include sequences per sample (library) information, and write the modified mapping file to the output file. [OPTIONAL]"/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="outputfile" label="${tool.name} on ${on_string}"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>.. class:: warningmark Warning: log data from standard output currently not available.
+ 
+For more information, see per_library_stats_ in the Qiime documentation.
+ 
+Updated and validated 01/18/12 by Amanda Zuzolo, Microbiome Analysis Center, George Mason University, Fairfax, VA
+
+Qiime integration courtesy Jim Johnson, Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN 
+
+ .. _per_library_stats: http://qiime.org/scripts/per_library_stats.html</help>
+</tool>
+