<tool id="per_library_stats" name="per_library_stats" version="2.0.0">
 <description>Calculate per library statistics</description>
 <requirements>
  <requirement type="binary">per_library_stats.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  per_library_stats.py
  --otu_table_fp=$otu_table_fp
  #if $mapfile != None and $mapfile.__str__ != 'None' and $mapfile.__str__ != '':
  --mapfile=$mapfile
  #end if
  --outputfile=$outputfile
 </command>
 <inputs>
  <param name="otu_table_fp" type="data" format="txt" label="otu_table_fp"
   help="path to the input OTU table (i.e., the output from make_otu_table.py) [REQUIRED]"/>
  <param name="mapfile" type="data" optional="true" format="txt" label="mapfile" help="A mapping file. If included, this script will modify the mapping file to include sequences per sample (library) information, and write the modified mapping file to the output file. [OPTIONAL]"/>
 </inputs>
 <outputs>
  <data format="txt" name="outputfile" label="${tool.name} on ${on_string}"/>
 </outputs>
 <tests>
 </tests>
 <help>.. class:: warningmark Warning: log data from standard output currently not available.
 
For more information, see per_library_stats_ in the Qiime documentation.
 
Updated and validated 01/18/12 by Amanda Zuzolo, Microbiome Analysis Center, George Mason University, Fairfax, VA

Qiime integration courtesy Jim Johnson, Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN 

 .. _per_library_stats: http://qiime.org/scripts/per_library_stats.html</help>
</tool>