diff test-data/humann36_pathways_input.tabular @ 3:01ac9954c27f draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/combine_metaphlan2_humann2 commit b84cbcbffa25c55acd1a31df76e4a4f78772cbd7
author bgruening
date Thu, 20 Jul 2023 10:07:12 +0000
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/humann36_pathways_input.tabular	Thu Jul 20 10:07:12 2023 +0000
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+# Pathway	humann_Abundance
+UNMAPPED	8349.9735860182
+UNINTEGRATED	48556.8350742608
+UNINTEGRATED|g__Acetivibrio.s__Acetivibrio_thermocellus	29162.0390929203
+UNINTEGRATED|unclassified	3307.1774531381
+PWY-6609: adenine and adenosine salvage III	277.0510927865
+PWY-6609: adenine and adenosine salvage III|g__Acetivibrio.s__Acetivibrio_thermocellus	66.3688569288
+PWY-6609: adenine and adenosine salvage III|unclassified	11.9769595308
+PWY-1042: glycolysis IV	194.2219430842
+PWY-5100: pyruvate fermentation to acetate and lactate II	129.0053457248
+PWY-5100: pyruvate fermentation to acetate and lactate II|g__Acetivibrio.s__Acetivibrio_thermocellus	69.7497669984
+PWY-7221: guanosine ribonucleotides de novo biosynthesis	121.7671397650
+PWY-7221: guanosine ribonucleotides de novo biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus	108.5388331853
+PWY-7221: guanosine ribonucleotides de novo biosynthesis|unclassified	13.6910424631
+PWY-6703: preQ0 biosynthesis	103.6377362280
+PWY-6703: preQ0 biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus	98.9807370179
+PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I	83.3982268723
+PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	48.4938466340
+RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants)	77.2232042652
+RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants)|g__Acetivibrio.s__Acetivibrio_thermocellus	53.2211975186
+VALSYN-PWY: L-valine biosynthesis	77.0829759735
+VALSYN-PWY: L-valine biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus	77.0829759735
+PWY-7208: superpathway of pyrimidine nucleobases salvage	77.0563435419
+PWY-7208: superpathway of pyrimidine nucleobases salvage|g__Acetivibrio.s__Acetivibrio_thermocellus	45.1294786723
+PWY-7208: superpathway of pyrimidine nucleobases salvage|unclassified	17.1808137447
+ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine)	70.6881932740
+ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine)|g__Acetivibrio.s__Acetivibrio_thermocellus	70.6881932740
+PWY-5981: CDP-diacylglycerol biosynthesis III	70.6859344494
+PWY-3841: folate transformations II (plants)	68.9410605440
+PWY-3841: folate transformations II (plants)|g__Acetivibrio.s__Acetivibrio_thermocellus	65.3076297526
+PWY-5103: L-isoleucine biosynthesis III	66.6594375601
+PWY-5103: L-isoleucine biosynthesis III|g__Acetivibrio.s__Acetivibrio_thermocellus	66.6594375601
+PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I	60.8146639896
+PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	43.7454671075
+PWY0-1319: CDP-diacylglycerol biosynthesis II	60.4369653934
+PWY-5667: CDP-diacylglycerol biosynthesis I	60.4369653934
+COA-PWY-1: superpathway of coenzyme A biosynthesis III (mammals)	53.6643541116
+COA-PWY-1: superpathway of coenzyme A biosynthesis III (mammals)|g__Acetivibrio.s__Acetivibrio_thermocellus	44.5540259674
+ANAGLYCOLYSIS-PWY: glycolysis III (from glucose)	53.4593266289
+TRNA-CHARGING-PWY: tRNA charging	50.1452719795
+TRNA-CHARGING-PWY: tRNA charging|g__Acetivibrio.s__Acetivibrio_thermocellus	40.2804860544
+UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I	50.0293370404
+UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	43.2002393401
+P41-PWY: pyruvate fermentation to acetate and (S)-lactate I	49.9950777370
+P41-PWY: pyruvate fermentation to acetate and (S)-lactate I|g__Acetivibrio.s__Acetivibrio_thermocellus	45.0063828591
+COA-PWY: coenzyme A biosynthesis I (prokaryotic)	46.0146775357
+COA-PWY: coenzyme A biosynthesis I (prokaryotic)|g__Acetivibrio.s__Acetivibrio_thermocellus	37.7428378807
+PWY-7851: coenzyme A biosynthesis II (eukaryotic)	46.0146775357
+PWY-7851: coenzyme A biosynthesis II (eukaryotic)|g__Acetivibrio.s__Acetivibrio_thermocellus	37.7428378807
+PWY-5695: inosine 5'-phosphate degradation	44.9825390520
+PWY-7663: gondoate biosynthesis (anaerobic)	44.5900884307
+PWY-7663: gondoate biosynthesis (anaerobic)|g__Acetivibrio.s__Acetivibrio_thermocellus	44.5900884307
+PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II	44.4509651435
+PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	35.7191062812
+BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched chain amino acid biosynthesis	43.3661409897
+BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched chain amino acid biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus	43.3661409897
+PWY-6163: chorismate biosynthesis from 3-dehydroquinate	42.7003027941
+PWY-6163: chorismate biosynthesis from 3-dehydroquinate|g__Acetivibrio.s__Acetivibrio_thermocellus	42.7002989930
+ARO-PWY: chorismate biosynthesis I	42.3278485242
+ARO-PWY: chorismate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	42.3278458563
+PWY-7238: sucrose biosynthesis II	41.6426486664
+PWY-7238: sucrose biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	41.6426486664
+PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II	40.3608681565
+PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	33.5353440501
+PWY-841: superpathway of purine nucleotides de novo biosynthesis I	37.3450328428
+PWY-841: superpathway of purine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	31.4817544778
+FASYN-ELONG-PWY: fatty acid elongation -- saturated	36.9567602351
+PWY-5973: cis-vaccenate biosynthesis	36.7150555172
+PWY-7664: oleate biosynthesis IV (anaerobic)	36.5990400394
+PWY0-862: (5Z)-dodecenoate biosynthesis I	36.1327148262
+GLYCOGENSYNTH-PWY: glycogen biosynthesis I (from ADP-D-Glucose)	34.7512555037
+GLYCOGENSYNTH-PWY: glycogen biosynthesis I (from ADP-D-Glucose)|g__Acetivibrio.s__Acetivibrio_thermocellus	34.7512555037
+PWY-6282: palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)	34.4754083802
+PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I	34.4366683793
+PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	26.9529719544
+NONMEVIPP-PWY: methylerythritol phosphate pathway I	33.6589833555
+NONMEVIPP-PWY: methylerythritol phosphate pathway I|g__Acetivibrio.s__Acetivibrio_thermocellus	29.0719820809
+PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)	33.0594389993
+PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus	20.8795281789
+SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I	32.8269248922
+SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I|unclassified	12.3167606082
+PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II	30.5171500072
+PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	23.3388473782
+PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis	30.5171500072
+PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus	23.3388473782
+PYRIDNUCSYN-PWY: NAD de novo biosynthesis I (from aspartate)	29.9045452545
+PYRIDNUCSYN-PWY: NAD de novo biosynthesis I (from aspartate)|g__Acetivibrio.s__Acetivibrio_thermocellus	20.7694090097
+PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)	29.7827132121
+PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)|g__Acetivibrio.s__Acetivibrio_thermocellus	24.3303646214
+PWY-6124: inosine-5'-phosphate biosynthesis II	29.6777862771
+PWY-6124: inosine-5'-phosphate biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	27.8207756981
+PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing)	29.4351322618
+PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus	21.3306301878
+PWY-2942: L-lysine biosynthesis III	28.9072019154
+PWY-2942: L-lysine biosynthesis III|g__Acetivibrio.s__Acetivibrio_thermocellus	28.9072019154
+PWY0-1296: purine ribonucleosides degradation	28.8114422948
+PWY0-1296: purine ribonucleosides degradation|g__Acetivibrio.s__Acetivibrio_thermocellus	21.7825853640
+PANTOSYN-PWY: superpathway of coenzyme A biosynthesis I (bacteria)	28.6286133554
+PANTOSYN-PWY: superpathway of coenzyme A biosynthesis I (bacteria)|g__Acetivibrio.s__Acetivibrio_thermocellus	25.9318707800
+PWY-6123: inosine-5'-phosphate biosynthesis I	28.5956903171
+PWY-6123: inosine-5'-phosphate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	27.1410372715
+PWY-6385: peptidoglycan biosynthesis III (mycobacteria)	28.0459769653
+PWY-6385: peptidoglycan biosynthesis III (mycobacteria)|g__Acetivibrio.s__Acetivibrio_thermocellus	20.5915247014
+PWY-7953: UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing)	27.3969889419
+PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing)	25.5073725776
+PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus	25.5073725776
+PANTO-PWY: phosphopantothenate biosynthesis I	23.5721171877
+PANTO-PWY: phosphopantothenate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	21.8182330339
+PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II	22.4257853098
+PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	19.9656642609
+PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II	22.4257853098
+PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	19.9656642609
+PWY-6700: queuosine biosynthesis I (de novo)	20.5232364544
+PWY-6700: queuosine biosynthesis I (de novo)|g__Acetivibrio.s__Acetivibrio_thermocellus	19.1237279391
+PWY-6147: 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I	18.5007041182
+PWY-6147: 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	18.3787528306