Mercurial > repos > bebatut > combine_metaphlan2_humann2
diff test-data/humann36_pathways_input.tabular @ 3:01ac9954c27f draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/combine_metaphlan2_humann2 commit b84cbcbffa25c55acd1a31df76e4a4f78772cbd7
author | bgruening |
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date | Thu, 20 Jul 2023 10:07:12 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/humann36_pathways_input.tabular Thu Jul 20 10:07:12 2023 +0000 @@ -0,0 +1,116 @@ +# Pathway humann_Abundance +UNMAPPED 8349.9735860182 +UNINTEGRATED 48556.8350742608 +UNINTEGRATED|g__Acetivibrio.s__Acetivibrio_thermocellus 29162.0390929203 +UNINTEGRATED|unclassified 3307.1774531381 +PWY-6609: adenine and adenosine salvage III 277.0510927865 +PWY-6609: adenine and adenosine salvage III|g__Acetivibrio.s__Acetivibrio_thermocellus 66.3688569288 +PWY-6609: adenine and adenosine salvage III|unclassified 11.9769595308 +PWY-1042: glycolysis IV 194.2219430842 +PWY-5100: pyruvate fermentation to acetate and lactate II 129.0053457248 +PWY-5100: pyruvate fermentation to acetate and lactate II|g__Acetivibrio.s__Acetivibrio_thermocellus 69.7497669984 +PWY-7221: guanosine ribonucleotides de novo biosynthesis 121.7671397650 +PWY-7221: guanosine ribonucleotides de novo biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 108.5388331853 +PWY-7221: guanosine ribonucleotides de novo biosynthesis|unclassified 13.6910424631 +PWY-6703: preQ0 biosynthesis 103.6377362280 +PWY-6703: preQ0 biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 98.9807370179 +PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I 83.3982268723 +PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 48.4938466340 +RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants) 77.2232042652 +RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants)|g__Acetivibrio.s__Acetivibrio_thermocellus 53.2211975186 +VALSYN-PWY: L-valine biosynthesis 77.0829759735 +VALSYN-PWY: L-valine biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 77.0829759735 +PWY-7208: superpathway of pyrimidine nucleobases salvage 77.0563435419 +PWY-7208: superpathway of pyrimidine nucleobases salvage|g__Acetivibrio.s__Acetivibrio_thermocellus 45.1294786723 +PWY-7208: superpathway of pyrimidine nucleobases salvage|unclassified 17.1808137447 +ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine) 70.6881932740 +ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine)|g__Acetivibrio.s__Acetivibrio_thermocellus 70.6881932740 +PWY-5981: CDP-diacylglycerol biosynthesis III 70.6859344494 +PWY-3841: folate transformations II (plants) 68.9410605440 +PWY-3841: folate transformations II (plants)|g__Acetivibrio.s__Acetivibrio_thermocellus 65.3076297526 +PWY-5103: L-isoleucine biosynthesis III 66.6594375601 +PWY-5103: L-isoleucine biosynthesis III|g__Acetivibrio.s__Acetivibrio_thermocellus 66.6594375601 +PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I 60.8146639896 +PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 43.7454671075 +PWY0-1319: CDP-diacylglycerol biosynthesis II 60.4369653934 +PWY-5667: CDP-diacylglycerol biosynthesis I 60.4369653934 +COA-PWY-1: superpathway of coenzyme A biosynthesis III (mammals) 53.6643541116 +COA-PWY-1: superpathway of coenzyme A biosynthesis III (mammals)|g__Acetivibrio.s__Acetivibrio_thermocellus 44.5540259674 +ANAGLYCOLYSIS-PWY: glycolysis III (from glucose) 53.4593266289 +TRNA-CHARGING-PWY: tRNA charging 50.1452719795 +TRNA-CHARGING-PWY: tRNA charging|g__Acetivibrio.s__Acetivibrio_thermocellus 40.2804860544 +UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I 50.0293370404 +UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 43.2002393401 +P41-PWY: pyruvate fermentation to acetate and (S)-lactate I 49.9950777370 +P41-PWY: pyruvate fermentation to acetate and (S)-lactate I|g__Acetivibrio.s__Acetivibrio_thermocellus 45.0063828591 +COA-PWY: coenzyme A biosynthesis I (prokaryotic) 46.0146775357 +COA-PWY: coenzyme A biosynthesis I (prokaryotic)|g__Acetivibrio.s__Acetivibrio_thermocellus 37.7428378807 +PWY-7851: coenzyme A biosynthesis II (eukaryotic) 46.0146775357 +PWY-7851: coenzyme A biosynthesis II (eukaryotic)|g__Acetivibrio.s__Acetivibrio_thermocellus 37.7428378807 +PWY-5695: inosine 5'-phosphate degradation 44.9825390520 +PWY-7663: gondoate biosynthesis (anaerobic) 44.5900884307 +PWY-7663: gondoate biosynthesis (anaerobic)|g__Acetivibrio.s__Acetivibrio_thermocellus 44.5900884307 +PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II 44.4509651435 +PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 35.7191062812 +BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched chain amino acid biosynthesis 43.3661409897 +BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched chain amino acid biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 43.3661409897 +PWY-6163: chorismate biosynthesis from 3-dehydroquinate 42.7003027941 +PWY-6163: chorismate biosynthesis from 3-dehydroquinate|g__Acetivibrio.s__Acetivibrio_thermocellus 42.7002989930 +ARO-PWY: chorismate biosynthesis I 42.3278485242 +ARO-PWY: chorismate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 42.3278458563 +PWY-7238: sucrose biosynthesis II 41.6426486664 +PWY-7238: sucrose biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 41.6426486664 +PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II 40.3608681565 +PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 33.5353440501 +PWY-841: superpathway of purine nucleotides de novo biosynthesis I 37.3450328428 +PWY-841: superpathway of purine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 31.4817544778 +FASYN-ELONG-PWY: fatty acid elongation -- saturated 36.9567602351 +PWY-5973: cis-vaccenate biosynthesis 36.7150555172 +PWY-7664: oleate biosynthesis IV (anaerobic) 36.5990400394 +PWY0-862: (5Z)-dodecenoate biosynthesis I 36.1327148262 +GLYCOGENSYNTH-PWY: glycogen biosynthesis I (from ADP-D-Glucose) 34.7512555037 +GLYCOGENSYNTH-PWY: glycogen biosynthesis I (from ADP-D-Glucose)|g__Acetivibrio.s__Acetivibrio_thermocellus 34.7512555037 +PWY-6282: palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 34.4754083802 +PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I 34.4366683793 +PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 26.9529719544 +NONMEVIPP-PWY: methylerythritol phosphate pathway I 33.6589833555 +NONMEVIPP-PWY: methylerythritol phosphate pathway I|g__Acetivibrio.s__Acetivibrio_thermocellus 29.0719820809 +PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) 33.0594389993 +PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 20.8795281789 +SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I 32.8269248922 +SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I|unclassified 12.3167606082 +PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II 30.5171500072 +PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 23.3388473782 +PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis 30.5171500072 +PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 23.3388473782 +PYRIDNUCSYN-PWY: NAD de novo biosynthesis I (from aspartate) 29.9045452545 +PYRIDNUCSYN-PWY: NAD de novo biosynthesis I (from aspartate)|g__Acetivibrio.s__Acetivibrio_thermocellus 20.7694090097 +PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) 29.7827132121 +PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 24.3303646214 +PWY-6124: inosine-5'-phosphate biosynthesis II 29.6777862771 +PWY-6124: inosine-5'-phosphate biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 27.8207756981 +PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing) 29.4351322618 +PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 21.3306301878 +PWY-2942: L-lysine biosynthesis III 28.9072019154 +PWY-2942: L-lysine biosynthesis III|g__Acetivibrio.s__Acetivibrio_thermocellus 28.9072019154 +PWY0-1296: purine ribonucleosides degradation 28.8114422948 +PWY0-1296: purine ribonucleosides degradation|g__Acetivibrio.s__Acetivibrio_thermocellus 21.7825853640 +PANTOSYN-PWY: superpathway of coenzyme A biosynthesis I (bacteria) 28.6286133554 +PANTOSYN-PWY: superpathway of coenzyme A biosynthesis I (bacteria)|g__Acetivibrio.s__Acetivibrio_thermocellus 25.9318707800 +PWY-6123: inosine-5'-phosphate biosynthesis I 28.5956903171 +PWY-6123: inosine-5'-phosphate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 27.1410372715 +PWY-6385: peptidoglycan biosynthesis III (mycobacteria) 28.0459769653 +PWY-6385: peptidoglycan biosynthesis III (mycobacteria)|g__Acetivibrio.s__Acetivibrio_thermocellus 20.5915247014 +PWY-7953: UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing) 27.3969889419 +PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing) 25.5073725776 +PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 25.5073725776 +PANTO-PWY: phosphopantothenate biosynthesis I 23.5721171877 +PANTO-PWY: phosphopantothenate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 21.8182330339 +PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II 22.4257853098 +PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 19.9656642609 +PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II 22.4257853098 +PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 19.9656642609 +PWY-6700: queuosine biosynthesis I (de novo) 20.5232364544 +PWY-6700: queuosine biosynthesis I (de novo)|g__Acetivibrio.s__Acetivibrio_thermocellus 19.1237279391 +PWY-6147: 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I 18.5007041182 +PWY-6147: 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 18.3787528306