view test-data/humann36_pathways_input.tabular @ 4:662a334004b4 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/combine_metaphlan2_humann2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author bgruening
date Sat, 04 Nov 2023 18:59:48 +0000
parents 01ac9954c27f
children
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# Pathway	humann_Abundance
UNMAPPED	8349.9735860182
UNINTEGRATED	48556.8350742608
UNINTEGRATED|g__Acetivibrio.s__Acetivibrio_thermocellus	29162.0390929203
UNINTEGRATED|unclassified	3307.1774531381
PWY-6609: adenine and adenosine salvage III	277.0510927865
PWY-6609: adenine and adenosine salvage III|g__Acetivibrio.s__Acetivibrio_thermocellus	66.3688569288
PWY-6609: adenine and adenosine salvage III|unclassified	11.9769595308
PWY-1042: glycolysis IV	194.2219430842
PWY-5100: pyruvate fermentation to acetate and lactate II	129.0053457248
PWY-5100: pyruvate fermentation to acetate and lactate II|g__Acetivibrio.s__Acetivibrio_thermocellus	69.7497669984
PWY-7221: guanosine ribonucleotides de novo biosynthesis	121.7671397650
PWY-7221: guanosine ribonucleotides de novo biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus	108.5388331853
PWY-7221: guanosine ribonucleotides de novo biosynthesis|unclassified	13.6910424631
PWY-6703: preQ0 biosynthesis	103.6377362280
PWY-6703: preQ0 biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus	98.9807370179
PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I	83.3982268723
PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	48.4938466340
RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants)	77.2232042652
RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants)|g__Acetivibrio.s__Acetivibrio_thermocellus	53.2211975186
VALSYN-PWY: L-valine biosynthesis	77.0829759735
VALSYN-PWY: L-valine biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus	77.0829759735
PWY-7208: superpathway of pyrimidine nucleobases salvage	77.0563435419
PWY-7208: superpathway of pyrimidine nucleobases salvage|g__Acetivibrio.s__Acetivibrio_thermocellus	45.1294786723
PWY-7208: superpathway of pyrimidine nucleobases salvage|unclassified	17.1808137447
ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine)	70.6881932740
ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine)|g__Acetivibrio.s__Acetivibrio_thermocellus	70.6881932740
PWY-5981: CDP-diacylglycerol biosynthesis III	70.6859344494
PWY-3841: folate transformations II (plants)	68.9410605440
PWY-3841: folate transformations II (plants)|g__Acetivibrio.s__Acetivibrio_thermocellus	65.3076297526
PWY-5103: L-isoleucine biosynthesis III	66.6594375601
PWY-5103: L-isoleucine biosynthesis III|g__Acetivibrio.s__Acetivibrio_thermocellus	66.6594375601
PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I	60.8146639896
PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	43.7454671075
PWY0-1319: CDP-diacylglycerol biosynthesis II	60.4369653934
PWY-5667: CDP-diacylglycerol biosynthesis I	60.4369653934
COA-PWY-1: superpathway of coenzyme A biosynthesis III (mammals)	53.6643541116
COA-PWY-1: superpathway of coenzyme A biosynthesis III (mammals)|g__Acetivibrio.s__Acetivibrio_thermocellus	44.5540259674
ANAGLYCOLYSIS-PWY: glycolysis III (from glucose)	53.4593266289
TRNA-CHARGING-PWY: tRNA charging	50.1452719795
TRNA-CHARGING-PWY: tRNA charging|g__Acetivibrio.s__Acetivibrio_thermocellus	40.2804860544
UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I	50.0293370404
UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	43.2002393401
P41-PWY: pyruvate fermentation to acetate and (S)-lactate I	49.9950777370
P41-PWY: pyruvate fermentation to acetate and (S)-lactate I|g__Acetivibrio.s__Acetivibrio_thermocellus	45.0063828591
COA-PWY: coenzyme A biosynthesis I (prokaryotic)	46.0146775357
COA-PWY: coenzyme A biosynthesis I (prokaryotic)|g__Acetivibrio.s__Acetivibrio_thermocellus	37.7428378807
PWY-7851: coenzyme A biosynthesis II (eukaryotic)	46.0146775357
PWY-7851: coenzyme A biosynthesis II (eukaryotic)|g__Acetivibrio.s__Acetivibrio_thermocellus	37.7428378807
PWY-5695: inosine 5'-phosphate degradation	44.9825390520
PWY-7663: gondoate biosynthesis (anaerobic)	44.5900884307
PWY-7663: gondoate biosynthesis (anaerobic)|g__Acetivibrio.s__Acetivibrio_thermocellus	44.5900884307
PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II	44.4509651435
PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	35.7191062812
BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched chain amino acid biosynthesis	43.3661409897
BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched chain amino acid biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus	43.3661409897
PWY-6163: chorismate biosynthesis from 3-dehydroquinate	42.7003027941
PWY-6163: chorismate biosynthesis from 3-dehydroquinate|g__Acetivibrio.s__Acetivibrio_thermocellus	42.7002989930
ARO-PWY: chorismate biosynthesis I	42.3278485242
ARO-PWY: chorismate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	42.3278458563
PWY-7238: sucrose biosynthesis II	41.6426486664
PWY-7238: sucrose biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	41.6426486664
PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II	40.3608681565
PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	33.5353440501
PWY-841: superpathway of purine nucleotides de novo biosynthesis I	37.3450328428
PWY-841: superpathway of purine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	31.4817544778
FASYN-ELONG-PWY: fatty acid elongation -- saturated	36.9567602351
PWY-5973: cis-vaccenate biosynthesis	36.7150555172
PWY-7664: oleate biosynthesis IV (anaerobic)	36.5990400394
PWY0-862: (5Z)-dodecenoate biosynthesis I	36.1327148262
GLYCOGENSYNTH-PWY: glycogen biosynthesis I (from ADP-D-Glucose)	34.7512555037
GLYCOGENSYNTH-PWY: glycogen biosynthesis I (from ADP-D-Glucose)|g__Acetivibrio.s__Acetivibrio_thermocellus	34.7512555037
PWY-6282: palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)	34.4754083802
PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I	34.4366683793
PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	26.9529719544
NONMEVIPP-PWY: methylerythritol phosphate pathway I	33.6589833555
NONMEVIPP-PWY: methylerythritol phosphate pathway I|g__Acetivibrio.s__Acetivibrio_thermocellus	29.0719820809
PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)	33.0594389993
PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus	20.8795281789
SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I	32.8269248922
SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I|unclassified	12.3167606082
PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II	30.5171500072
PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	23.3388473782
PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis	30.5171500072
PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus	23.3388473782
PYRIDNUCSYN-PWY: NAD de novo biosynthesis I (from aspartate)	29.9045452545
PYRIDNUCSYN-PWY: NAD de novo biosynthesis I (from aspartate)|g__Acetivibrio.s__Acetivibrio_thermocellus	20.7694090097
PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)	29.7827132121
PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)|g__Acetivibrio.s__Acetivibrio_thermocellus	24.3303646214
PWY-6124: inosine-5'-phosphate biosynthesis II	29.6777862771
PWY-6124: inosine-5'-phosphate biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	27.8207756981
PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing)	29.4351322618
PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus	21.3306301878
PWY-2942: L-lysine biosynthesis III	28.9072019154
PWY-2942: L-lysine biosynthesis III|g__Acetivibrio.s__Acetivibrio_thermocellus	28.9072019154
PWY0-1296: purine ribonucleosides degradation	28.8114422948
PWY0-1296: purine ribonucleosides degradation|g__Acetivibrio.s__Acetivibrio_thermocellus	21.7825853640
PANTOSYN-PWY: superpathway of coenzyme A biosynthesis I (bacteria)	28.6286133554
PANTOSYN-PWY: superpathway of coenzyme A biosynthesis I (bacteria)|g__Acetivibrio.s__Acetivibrio_thermocellus	25.9318707800
PWY-6123: inosine-5'-phosphate biosynthesis I	28.5956903171
PWY-6123: inosine-5'-phosphate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	27.1410372715
PWY-6385: peptidoglycan biosynthesis III (mycobacteria)	28.0459769653
PWY-6385: peptidoglycan biosynthesis III (mycobacteria)|g__Acetivibrio.s__Acetivibrio_thermocellus	20.5915247014
PWY-7953: UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing)	27.3969889419
PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing)	25.5073725776
PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus	25.5073725776
PANTO-PWY: phosphopantothenate biosynthesis I	23.5721171877
PANTO-PWY: phosphopantothenate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	21.8182330339
PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II	22.4257853098
PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	19.9656642609
PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II	22.4257853098
PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus	19.9656642609
PWY-6700: queuosine biosynthesis I (de novo)	20.5232364544
PWY-6700: queuosine biosynthesis I (de novo)|g__Acetivibrio.s__Acetivibrio_thermocellus	19.1237279391
PWY-6147: 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I	18.5007041182
PWY-6147: 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus	18.3787528306