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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/combine_metaphlan2_humann2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author | bgruening |
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date | Sat, 04 Nov 2023 18:59:48 +0000 |
parents | 01ac9954c27f |
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# Pathway humann_Abundance UNMAPPED 8349.9735860182 UNINTEGRATED 48556.8350742608 UNINTEGRATED|g__Acetivibrio.s__Acetivibrio_thermocellus 29162.0390929203 UNINTEGRATED|unclassified 3307.1774531381 PWY-6609: adenine and adenosine salvage III 277.0510927865 PWY-6609: adenine and adenosine salvage III|g__Acetivibrio.s__Acetivibrio_thermocellus 66.3688569288 PWY-6609: adenine and adenosine salvage III|unclassified 11.9769595308 PWY-1042: glycolysis IV 194.2219430842 PWY-5100: pyruvate fermentation to acetate and lactate II 129.0053457248 PWY-5100: pyruvate fermentation to acetate and lactate II|g__Acetivibrio.s__Acetivibrio_thermocellus 69.7497669984 PWY-7221: guanosine ribonucleotides de novo biosynthesis 121.7671397650 PWY-7221: guanosine ribonucleotides de novo biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 108.5388331853 PWY-7221: guanosine ribonucleotides de novo biosynthesis|unclassified 13.6910424631 PWY-6703: preQ0 biosynthesis 103.6377362280 PWY-6703: preQ0 biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 98.9807370179 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I 83.3982268723 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 48.4938466340 RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants) 77.2232042652 RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants)|g__Acetivibrio.s__Acetivibrio_thermocellus 53.2211975186 VALSYN-PWY: L-valine biosynthesis 77.0829759735 VALSYN-PWY: L-valine biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 77.0829759735 PWY-7208: superpathway of pyrimidine nucleobases salvage 77.0563435419 PWY-7208: superpathway of pyrimidine nucleobases salvage|g__Acetivibrio.s__Acetivibrio_thermocellus 45.1294786723 PWY-7208: superpathway of pyrimidine nucleobases salvage|unclassified 17.1808137447 ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine) 70.6881932740 ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine)|g__Acetivibrio.s__Acetivibrio_thermocellus 70.6881932740 PWY-5981: CDP-diacylglycerol biosynthesis III 70.6859344494 PWY-3841: folate transformations II (plants) 68.9410605440 PWY-3841: folate transformations II (plants)|g__Acetivibrio.s__Acetivibrio_thermocellus 65.3076297526 PWY-5103: L-isoleucine biosynthesis III 66.6594375601 PWY-5103: L-isoleucine biosynthesis III|g__Acetivibrio.s__Acetivibrio_thermocellus 66.6594375601 PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I 60.8146639896 PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 43.7454671075 PWY0-1319: CDP-diacylglycerol biosynthesis II 60.4369653934 PWY-5667: CDP-diacylglycerol biosynthesis I 60.4369653934 COA-PWY-1: superpathway of coenzyme A biosynthesis III (mammals) 53.6643541116 COA-PWY-1: superpathway of coenzyme A biosynthesis III (mammals)|g__Acetivibrio.s__Acetivibrio_thermocellus 44.5540259674 ANAGLYCOLYSIS-PWY: glycolysis III (from glucose) 53.4593266289 TRNA-CHARGING-PWY: tRNA charging 50.1452719795 TRNA-CHARGING-PWY: tRNA charging|g__Acetivibrio.s__Acetivibrio_thermocellus 40.2804860544 UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I 50.0293370404 UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 43.2002393401 P41-PWY: pyruvate fermentation to acetate and (S)-lactate I 49.9950777370 P41-PWY: pyruvate fermentation to acetate and (S)-lactate I|g__Acetivibrio.s__Acetivibrio_thermocellus 45.0063828591 COA-PWY: coenzyme A biosynthesis I (prokaryotic) 46.0146775357 COA-PWY: coenzyme A biosynthesis I (prokaryotic)|g__Acetivibrio.s__Acetivibrio_thermocellus 37.7428378807 PWY-7851: coenzyme A biosynthesis II (eukaryotic) 46.0146775357 PWY-7851: coenzyme A biosynthesis II (eukaryotic)|g__Acetivibrio.s__Acetivibrio_thermocellus 37.7428378807 PWY-5695: inosine 5'-phosphate degradation 44.9825390520 PWY-7663: gondoate biosynthesis (anaerobic) 44.5900884307 PWY-7663: gondoate biosynthesis (anaerobic)|g__Acetivibrio.s__Acetivibrio_thermocellus 44.5900884307 PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II 44.4509651435 PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 35.7191062812 BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched chain amino acid biosynthesis 43.3661409897 BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched chain amino acid biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 43.3661409897 PWY-6163: chorismate biosynthesis from 3-dehydroquinate 42.7003027941 PWY-6163: chorismate biosynthesis from 3-dehydroquinate|g__Acetivibrio.s__Acetivibrio_thermocellus 42.7002989930 ARO-PWY: chorismate biosynthesis I 42.3278485242 ARO-PWY: chorismate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 42.3278458563 PWY-7238: sucrose biosynthesis II 41.6426486664 PWY-7238: sucrose biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 41.6426486664 PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II 40.3608681565 PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 33.5353440501 PWY-841: superpathway of purine nucleotides de novo biosynthesis I 37.3450328428 PWY-841: superpathway of purine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 31.4817544778 FASYN-ELONG-PWY: fatty acid elongation -- saturated 36.9567602351 PWY-5973: cis-vaccenate biosynthesis 36.7150555172 PWY-7664: oleate biosynthesis IV (anaerobic) 36.5990400394 PWY0-862: (5Z)-dodecenoate biosynthesis I 36.1327148262 GLYCOGENSYNTH-PWY: glycogen biosynthesis I (from ADP-D-Glucose) 34.7512555037 GLYCOGENSYNTH-PWY: glycogen biosynthesis I (from ADP-D-Glucose)|g__Acetivibrio.s__Acetivibrio_thermocellus 34.7512555037 PWY-6282: palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 34.4754083802 PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I 34.4366683793 PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 26.9529719544 NONMEVIPP-PWY: methylerythritol phosphate pathway I 33.6589833555 NONMEVIPP-PWY: methylerythritol phosphate pathway I|g__Acetivibrio.s__Acetivibrio_thermocellus 29.0719820809 PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) 33.0594389993 PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 20.8795281789 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I 32.8269248922 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I|unclassified 12.3167606082 PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II 30.5171500072 PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 23.3388473782 PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis 30.5171500072 PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 23.3388473782 PYRIDNUCSYN-PWY: NAD de novo biosynthesis I (from aspartate) 29.9045452545 PYRIDNUCSYN-PWY: NAD de novo biosynthesis I (from aspartate)|g__Acetivibrio.s__Acetivibrio_thermocellus 20.7694090097 PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) 29.7827132121 PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 24.3303646214 PWY-6124: inosine-5'-phosphate biosynthesis II 29.6777862771 PWY-6124: inosine-5'-phosphate biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 27.8207756981 PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing) 29.4351322618 PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 21.3306301878 PWY-2942: L-lysine biosynthesis III 28.9072019154 PWY-2942: L-lysine biosynthesis III|g__Acetivibrio.s__Acetivibrio_thermocellus 28.9072019154 PWY0-1296: purine ribonucleosides degradation 28.8114422948 PWY0-1296: purine ribonucleosides degradation|g__Acetivibrio.s__Acetivibrio_thermocellus 21.7825853640 PANTOSYN-PWY: superpathway of coenzyme A biosynthesis I (bacteria) 28.6286133554 PANTOSYN-PWY: superpathway of coenzyme A biosynthesis I (bacteria)|g__Acetivibrio.s__Acetivibrio_thermocellus 25.9318707800 PWY-6123: inosine-5'-phosphate biosynthesis I 28.5956903171 PWY-6123: inosine-5'-phosphate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 27.1410372715 PWY-6385: peptidoglycan biosynthesis III (mycobacteria) 28.0459769653 PWY-6385: peptidoglycan biosynthesis III (mycobacteria)|g__Acetivibrio.s__Acetivibrio_thermocellus 20.5915247014 PWY-7953: UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing) 27.3969889419 PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing) 25.5073725776 PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 25.5073725776 PANTO-PWY: phosphopantothenate biosynthesis I 23.5721171877 PANTO-PWY: phosphopantothenate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 21.8182330339 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II 22.4257853098 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 19.9656642609 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II 22.4257853098 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 19.9656642609 PWY-6700: queuosine biosynthesis I (de novo) 20.5232364544 PWY-6700: queuosine biosynthesis I (de novo)|g__Acetivibrio.s__Acetivibrio_thermocellus 19.1237279391 PWY-6147: 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I 18.5007041182 PWY-6147: 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 18.3787528306