Mercurial > repos > bebatut > format_cd_hit_output
comparison format_cd_hit_output.xml @ 1:64da677bcee2 draft default tip
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/format_cd_hit_output/ commit eea46077010e699403ce6995d7d4aac77b2e0b43"
| author | bgruening |
|---|---|
| date | Wed, 19 Oct 2022 14:42:33 +0000 |
| parents | 4015e9d6d277 |
| children |
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| 0:4015e9d6d277 | 1:64da677bcee2 |
|---|---|
| 1 <tool id="format_cd_hit_output" name="Format cd-hit outputs" version="1.0.0"> | 1 <tool id="format_cd_hit_output" name="Format cd-hit outputs" version="1.0.0+galaxy1"> |
| 2 <description>to rename representative sequences with cluster name and/or extract distribution inside clusters given a mapping file</description> | 2 <description>to rename representative sequences with cluster name and/or extract distribution inside clusters given a mapping file</description> |
| 3 | 3 |
| 4 <requirements> | 4 <requirements> |
| 5 </requirements> | 5 </requirements> |
| 6 | 6 |
| 74 <param name="input_representative_sequences" value="input_representative_sequences.fasta"/> | 74 <param name="input_representative_sequences" value="input_representative_sequences.fasta"/> |
| 75 <param name="extract_cat_distri_test" value="true"/> | 75 <param name="extract_cat_distri_test" value="true"/> |
| 76 <param name="input_mapping" value="input_mapping.txt"/> | 76 <param name="input_mapping" value="input_mapping.txt"/> |
| 77 <param name="number_sum" value="true"/> | 77 <param name="number_sum" value="true"/> |
| 78 <output name="output_representative_sequences" file="rename_representative_sequences_output.fasta"/> | 78 <output name="output_representative_sequences" file="rename_representative_sequences_output.fasta"/> |
| 79 <output name="output_category_distribution" file="extract_category_distribution_output.tabular"/> | 79 <output name="output_category_distribution"> |
| 80 <assert_contents> | |
| 81 <has_size value="139937" delta="100" /> | |
| 82 <has_n_lines n="2990"/> | |
| 83 <has_text text="amoA_arc_19F-TV1-T0-b"/> | |
| 84 </assert_contents> | |
| 85 </output> | |
| 80 </test> | 86 </test> |
| 81 </tests> | 87 </tests> |
| 82 | 88 |
| 83 <help><![CDATA[ | 89 <help><![CDATA[ |
| 84 | 90 |