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annotate tool-data/metaphlan2_db.loc.sample @ 0:d2448d2bf1f8 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
author bebatut
date Wed, 01 Jun 2016 10:45:26 -0400
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d2448d2bf1f8 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
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1 # Bowtie2 db have to be downloaded from https://bitbucket.org/biobakery/metaphlan2/src/5424bb911dfc/db_v20/?at=default (whole directory)
d2448d2bf1f8 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
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2 #
d2448d2bf1f8 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
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3 #Since MetaPhlAn comes bundled with 1 Bowtie2 database, you can use it
d2448d2bf1f8 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
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4 #by downloading it as explained above and uncommenting the following lines.
d2448d2bf1f8 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
parents:
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5 #mpa_v20_m200 Defaut database with clade-specific marker genes $METAPHLAN2_DIR/db_v20/mpa_v20_m200