Mercurial > repos > bgruening > antismash

comparison readme.rst @ 1:593bb8f5488b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit 654a4f3b3a1602cec2510d51fb953fd456427e08
author bgruening
date Wed, 07 Feb 2018 06:22:58 -0500
parents 5db064bbb3be
children
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0:5db064bbb3be 1:593bb8f5488b
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17 Installation 17 Installation
18 ============ 18 ============
19 19
20 Galaxy should be able to automatically install the dependencies, i.e. the 20 Galaxy should be able to automatically install the dependencies using conda
21 'package_hmmer_3_0' or 'package_blast_plus_2_2_28' repository.
22
23 You must tell Galaxy about any system level Pfam databases using the configuration
24 file antismash.loc.
25
26 You can download the Pfam provided databases as compressed archives from here:
27
28 * ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/
29
30
31 External Data
32 =============
33
34 The antismash.loc file contains the path to a Pfam database.
35 For any other tool that also uses a Pfam database *.log file, you can sync or link both *.loc files.
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38 21
39 History 22 History
40 ======= 23 =======
41 24
25 v0.2 - Antismash update 4.0.2
42 v0.1 - Initial public release 26 v0.1 - Initial public release
43 27
44 28
45 Licence (MIT) 29 Licence (MIT)
46 ============= 30 =============
60 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 44 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
61 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 45 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
62 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 46 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
63 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN 47 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
64 THE SOFTWARE. 48 THE SOFTWARE.
65