Mercurial > repos > bgruening > antismash
diff test-data/sequence.gb @ 1:593bb8f5488b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit 654a4f3b3a1602cec2510d51fb953fd456427e08
| author | bgruening |
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| date | Wed, 07 Feb 2018 06:22:58 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sequence.gb Wed Feb 07 06:22:58 2018 -0500 @@ -0,0 +1,146 @@ +LOCUS ARBH01000003 3500 bp DNA linear BCT 22-APR-2013 +DEFINITION Amycolatopsis balhimycina FH 1894 strain DSM 44591 + A3CEDRAFT_scaffold1.1_C3, whole genome shotgun sequence. +ACCESSION ARBH01000003 ARBH01000000 +VERSION ARBH01000003.1 +DBLINK BioProject: PRJNA165347 + BioSample: SAMN02256403 +KEYWORDS WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT. +SOURCE Amycolatopsis balhimycina FH 1894 + ORGANISM Amycolatopsis balhimycina FH 1894 + Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; + Amycolatopsis. +REFERENCE 1 (bases 1 to 3500) + AUTHORS Klenk,H.-P., Huntemann,M., Han,J., Chen,A., Kyrpides,N., + Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., + Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., + Hua,S.X. and Woyke,T. + TITLE Direct Submission + JOURNAL Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell + Drive, Walnut Creek, CA 94598-1698, USA +COMMENT URL -- http://www.jgi.doe.gov + JGI Project ID: 404843 + Source DNA and Organism available from Hans-Peter Klenk + (hpk@dsmz.de) + Source DNA available from Hans-Peter Klenk (hpk@dsmz.de) + Organism available from Hans-Peter Klenk (hpk@dsmz.de) + Contacts: Hans-Peter Klenk (hpk@dsmz.de) + Tanja Woyke (microbe@cuba.jgi-psf.org) + Whole genome sequencing and draft assembly at JGI-PGF + Annotation by JGI-ORNL + The JGI and collaborators endorse the principles for the + distribution and use of large scale sequencing data adopted by the + larger genome sequencing community and urge users of this data to + follow them. It is our intention to publish the work of this + project in a timely fashion and we welcome collaborative + interaction on the project and analysis. + (http://www.genome.gov/page.cfm?pageID=10506376) + Full annotations are available from IMG. + + ##MIGS-Data-START## + investigation_type :: bacteria_archaea + project_name :: Amycolatopsis balhimycina DSM 44591 + collection_date :: Missing + lat_lon :: Missing + depth :: Missing + alt_elev :: Missing + country :: India + num_replicons :: Missing + ref_biomaterial :: DSM 44591 + biotic_relationship :: Free living + rel_to_oxygen :: Aerobe + isol_growth_condt :: Missing + assembly :: Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap + v. 4.24 + finishing_strategy :: Missing + environment :: Soil + trophic_level :: Missing + sequencing_meth :: WGS + GOLD Stamp ID :: Gi10728 + Type Strain :: Yes + Funding Program :: DOE-CSP 2011 + Isolation Site :: Soil + Cell Shape :: Filament-shaped + Motility :: Nonmotile + Sporulation :: Sporulating + Temperature Range :: Mesophile + Gram Staining :: Gram+ + Diseases :: None + ##MIGS-Data-END## + + ##Genome-Assembly-Data-START## + Finishing Goal :: Improved High-Quality Draft + Current Finishing Status :: Improved High-Quality Draft + Assembly Method :: Velvet v. 1.1.05; ALLPATHS v. r38445; + Phrap v. 4.24 + Genome Coverage :: Unknown + Sequencing Technology :: Illumina GAii + ##Genome-Assembly-Data-END## +FEATURES Location/Qualifiers + source 1..3500 + /organism="Amycolatopsis balhimycina FH 1894" + /mol_type="genomic DNA" + /strain="DSM 44591" + /culture_collection="DSM:44591" + /db_xref="taxon:1089545" +ORIGIN + 1 ggggcggcgt gctcgccctg cccgccgagc tggaccgccg cggcggcgac cggctggcgg + 61 ctgtgctgtc cggcgccacc ggcgaagacc agctggccat ccgcgccgcc ggcgtgttcg + 121 gccgccgcgt ggtgcgggcc ccggccggcg accgcgcgcc ggcgcggacc tggaccccgc + 181 gcggcaccac gctgatcacc ggcggcaccg gcaccctggc cccgcacctg gcccgctggc + 241 tggccgagca gggcgccgag cacatcgtgc tgaccagccg caccggcgcc gaggccccga + 301 aggcccggca gctgctggcg gagctgggcg agaccgtcga ggcggtggcc tgcgacgtca + 361 ccgacaaggc ggcgctggcc gccctgctgg cgcggttgcg ggccgagggc cggaccgtgc + 421 ggaacgtggt gcacacggcc gccgtgatcg agctgcacac gctggccgag accgacctgg + 481 ccgcgttctc ccggaccgtg cacgccaagg tggtgggcgc gcgcaacctg gacgagctgc + 541 tcgacaccga cgagctcgat gcgttcgtgc tgtactcctc caccgccggc ctgtggggca + 601 ccggcgcgca cgccgcctac gtggccggca acgcgtactt gcacgcgctg gcagcccacc + 661 ggcgcgcccg ggggctgcgg gccaccgcgc tgtcgtgggg catctgggcc gacgaccgcg + 721 aactcggccg ggtcgacccg gagcagatcg tgcgcagcgg cctggtgttc atggcgccgg + 781 agctggcgct ggagggtctg cgccgggccc tggacgacga cgagaccgcg ctggccgtgg + 841 ccgatctgga ctgggagcgg tactacccgg tctacaccgc cgtccggccg acgctgctgt + 901 tcgacgagct gccggaggtg cggcggctca ccgaggccgc cgccgccacg gccgccaccg + 961 gcgccggcgg cgagttcgcc gcccggctgc gcacgctgcc cgaggccgag cgcgcccacc + 1021 tgctcctgga actggtccgg gccgaggccg cggccgtgct gggccacgcg tcggccgacg + 1081 cgctgcccga ggaccgcgcc ttccgcgacg tcggcttcga ctcggtcacc gcggtcgacc + 1141 tgcgcaaccg gatctccgcc ggcaccggcc tgaccctgcc cgccaccatg gtgttcgacc + 1201 acccgacgcc gaggcggctg gccgggttcc tggccgccac gatcaccggc tcgggtgccg + 1261 tcgagcaggc accggccgtg gccggcgtgg acaccggcga gcccgtcgcc atcatcggga + 1321 tggcctgccg ctacccgggt ggcgcgaaca ccccggaacg gttgtgggac ctggtcgtgg + 1381 gcggcgtgga cgccatctcc ggcttcccgg ccgaccgcaa ctggccgacc gacgcgctct + 1441 acgacccgga cccggacgcc ggcggcaaga cctattcggt gcagggcggc ttcctgcacg + 1501 aggcggccga gttcgacccg ggcttcttcg gcatctcgcc gcgggaggca ctgtccatgg + 1561 atccgcagca gcgcctgctg ctggagacgg cgtgggaggc gttcgagcgg gccgggatcg + 1621 acccgcacac gctgcggggc agcggcaccg gcaccttcat cggggccagc taccaggact + 1681 acaccgcggc cgtgtccggc gcggtggaca acgccgacgg ccacatgatc accggctcgc + 1741 tgggcagcat cctgtccggc cggctctcct acctgttcgg gctggagggc ccggcggtca + 1801 ccctggacac cgcctgctcg tcgtcgctgg tcgccatcca cctggccgcg cagtcgctgc + 1861 ggtcggggga gagcagcctg gcgctggccg gcggggtgag cgtgatggcg acgccggggg + 1921 cgttcgtcgg cttctcgcgc cagcgcgcac tggccacgga cggccgttgc aaggcctact + 1981 cggaccgggc cgacggcatg accctcggcg agggcgtcgg cctggtgctg ctggagaagc + 2041 tgtccgacgc gcagcgcaac gggcaccgga tcctggcggt ggtccggggt tcggccacga + 2101 accaggacgg cgcgtccaac ggcatgaccg cgcccagcgg cccgtcccag cagcgggtga + 2161 tccggcaggc gctggccaac gcgcggctct cggcgtccga ggtggacgtg atcgagggcc + 2221 acggcaccgg caccgcgctg ggcgacccga tcgaggccca ggccctgctg gccacctacg + 2281 gccaggaccg ggaacggccg ctgctgctcg gctcggtgaa gtccaacatc ggccacaccc + 2341 agatggcctc cggcgtggcc ggcgtgatca aggtggtgca ggcgctgcgg cacgggctgg + 2401 tacccaagac gctgcacgtg gacgagccct ccacgcacgt cgactggagc accggctcga + 2461 tcgagctgcc gtccggcagc gtgccgtggc cggagagcgg ccggccgcgc cgggccggta + 2521 tctcgtcctt cgggctgagc ggcacgaacg tgcacaccat cctcgagcag gccccggaac + 2581 cggccgccga agccggcccc gagccggagc ccggcctggt gccggtcccg ctgtccggcc + 2641 ggacggaagc agcgctgcgc gctcaggccg ccaccgtgct ggacaccctg gacgacggcg + 2701 tgtcgccggc cgtgctcggg tactcgctgg cctccacccg gtcggccttc gaacaccgtg + 2761 cggtgctgct ggccgaggac cacgacgaac tgcggcgcgg cctggccgca ctggccggcg + 2821 accagccgga cggcggcgtg gtgcggggca ccgtgacgcg gggccgcacg gcgttcctgt + 2881 tcgccggcca gggcagccag cgggccggga tgggccgcga gctgtacgag cgccacccgg + 2941 tgttcgccga cgcgctggac gcggtgctgg ggcacttcga cctgccccgt gcgctgcggg + 3001 acgtgatgtg ggacgacgat tccacggccc tcgacgagac ggggtacacc cagccggcgt + 3061 tgttcgcctt cgaggtggcg ttgttccggt tgctggagtc gtggggtgtg acgccggatt + 3121 acctggccgg gcattcgatc ggtgagatcg ccgcggcgca cgtggccgga gtgttgtcgc + 3181 tggccgatgc ctgtgcgttg gtcgctgcgc ggggtgcgct gatgcaggcg ctgccgtccg + 3241 gcggggccat ggtttcggtg cgcggctccg aggccgacgt cgccgggcac ctcggcgagg + 3301 acgtcgccgt cgcggcggtc aacgggcccg agtcggtggt gctggccggg accgaggacg + 3361 cggtgctcca ggcggccggc cgcctggagg ccgccggcca caaggtccgc cgcctgcggg + 3421 tcagccacgc cttccactcg cccttgatgg atcccgtgct ggccgagttc gcgacggtgg + 3481 ctcagggcct gacctaccac +//