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view test-data/sequence.gb @ 1:593bb8f5488b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit 654a4f3b3a1602cec2510d51fb953fd456427e08
| author | bgruening |
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| date | Wed, 07 Feb 2018 06:22:58 -0500 |
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LOCUS ARBH01000003 3500 bp DNA linear BCT 22-APR-2013 DEFINITION Amycolatopsis balhimycina FH 1894 strain DSM 44591 A3CEDRAFT_scaffold1.1_C3, whole genome shotgun sequence. ACCESSION ARBH01000003 ARBH01000000 VERSION ARBH01000003.1 DBLINK BioProject: PRJNA165347 BioSample: SAMN02256403 KEYWORDS WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT. SOURCE Amycolatopsis balhimycina FH 1894 ORGANISM Amycolatopsis balhimycina FH 1894 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis. REFERENCE 1 (bases 1 to 3500) AUTHORS Klenk,H.-P., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. TITLE Direct Submission JOURNAL Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 404843 Source DNA and Organism available from Hans-Peter Klenk (hpk@dsmz.de) Source DNA available from Hans-Peter Klenk (hpk@dsmz.de) Organism available from Hans-Peter Klenk (hpk@dsmz.de) Contacts: Hans-Peter Klenk (hpk@dsmz.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG. ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Amycolatopsis balhimycina DSM 44591 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: India num_replicons :: Missing ref_biomaterial :: DSM 44591 biotic_relationship :: Free living rel_to_oxygen :: Aerobe isol_growth_condt :: Missing assembly :: Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap v. 4.24 finishing_strategy :: Missing environment :: Soil trophic_level :: Missing sequencing_meth :: WGS GOLD Stamp ID :: Gi10728 Type Strain :: Yes Funding Program :: DOE-CSP 2011 Isolation Site :: Soil Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Improved High-Quality Draft Current Finishing Status :: Improved High-Quality Draft Assembly Method :: Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap v. 4.24 Genome Coverage :: Unknown Sequencing Technology :: Illumina GAii ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3500 /organism="Amycolatopsis balhimycina FH 1894" /mol_type="genomic DNA" /strain="DSM 44591" /culture_collection="DSM:44591" /db_xref="taxon:1089545" ORIGIN 1 ggggcggcgt gctcgccctg cccgccgagc tggaccgccg cggcggcgac cggctggcgg 61 ctgtgctgtc cggcgccacc ggcgaagacc agctggccat ccgcgccgcc ggcgtgttcg 121 gccgccgcgt ggtgcgggcc ccggccggcg accgcgcgcc ggcgcggacc tggaccccgc 181 gcggcaccac gctgatcacc ggcggcaccg gcaccctggc cccgcacctg gcccgctggc 241 tggccgagca gggcgccgag cacatcgtgc tgaccagccg caccggcgcc gaggccccga 301 aggcccggca gctgctggcg gagctgggcg agaccgtcga ggcggtggcc tgcgacgtca 361 ccgacaaggc ggcgctggcc gccctgctgg cgcggttgcg ggccgagggc cggaccgtgc 421 ggaacgtggt gcacacggcc gccgtgatcg agctgcacac gctggccgag accgacctgg 481 ccgcgttctc ccggaccgtg cacgccaagg tggtgggcgc gcgcaacctg gacgagctgc 541 tcgacaccga cgagctcgat gcgttcgtgc tgtactcctc caccgccggc ctgtggggca 601 ccggcgcgca cgccgcctac gtggccggca acgcgtactt gcacgcgctg gcagcccacc 661 ggcgcgcccg ggggctgcgg gccaccgcgc tgtcgtgggg catctgggcc gacgaccgcg 721 aactcggccg ggtcgacccg gagcagatcg tgcgcagcgg cctggtgttc atggcgccgg 781 agctggcgct ggagggtctg cgccgggccc tggacgacga cgagaccgcg ctggccgtgg 841 ccgatctgga ctgggagcgg tactacccgg tctacaccgc cgtccggccg acgctgctgt 901 tcgacgagct gccggaggtg cggcggctca ccgaggccgc cgccgccacg gccgccaccg 961 gcgccggcgg cgagttcgcc gcccggctgc gcacgctgcc cgaggccgag cgcgcccacc 1021 tgctcctgga actggtccgg gccgaggccg cggccgtgct gggccacgcg tcggccgacg 1081 cgctgcccga ggaccgcgcc ttccgcgacg tcggcttcga ctcggtcacc gcggtcgacc 1141 tgcgcaaccg gatctccgcc ggcaccggcc tgaccctgcc cgccaccatg gtgttcgacc 1201 acccgacgcc gaggcggctg gccgggttcc tggccgccac gatcaccggc tcgggtgccg 1261 tcgagcaggc accggccgtg gccggcgtgg acaccggcga gcccgtcgcc atcatcggga 1321 tggcctgccg ctacccgggt ggcgcgaaca ccccggaacg gttgtgggac ctggtcgtgg 1381 gcggcgtgga cgccatctcc ggcttcccgg ccgaccgcaa ctggccgacc gacgcgctct 1441 acgacccgga cccggacgcc ggcggcaaga cctattcggt gcagggcggc ttcctgcacg 1501 aggcggccga gttcgacccg ggcttcttcg gcatctcgcc gcgggaggca ctgtccatgg 1561 atccgcagca gcgcctgctg ctggagacgg cgtgggaggc gttcgagcgg gccgggatcg 1621 acccgcacac gctgcggggc agcggcaccg gcaccttcat cggggccagc taccaggact 1681 acaccgcggc cgtgtccggc gcggtggaca acgccgacgg ccacatgatc accggctcgc 1741 tgggcagcat cctgtccggc cggctctcct acctgttcgg gctggagggc ccggcggtca 1801 ccctggacac cgcctgctcg tcgtcgctgg tcgccatcca cctggccgcg cagtcgctgc 1861 ggtcggggga gagcagcctg gcgctggccg gcggggtgag cgtgatggcg acgccggggg 1921 cgttcgtcgg cttctcgcgc cagcgcgcac tggccacgga cggccgttgc aaggcctact 1981 cggaccgggc cgacggcatg accctcggcg agggcgtcgg cctggtgctg ctggagaagc 2041 tgtccgacgc gcagcgcaac gggcaccgga tcctggcggt ggtccggggt tcggccacga 2101 accaggacgg cgcgtccaac ggcatgaccg cgcccagcgg cccgtcccag cagcgggtga 2161 tccggcaggc gctggccaac gcgcggctct cggcgtccga ggtggacgtg atcgagggcc 2221 acggcaccgg caccgcgctg ggcgacccga tcgaggccca ggccctgctg gccacctacg 2281 gccaggaccg ggaacggccg ctgctgctcg gctcggtgaa gtccaacatc ggccacaccc 2341 agatggcctc cggcgtggcc ggcgtgatca aggtggtgca ggcgctgcgg cacgggctgg 2401 tacccaagac gctgcacgtg gacgagccct ccacgcacgt cgactggagc accggctcga 2461 tcgagctgcc gtccggcagc gtgccgtggc cggagagcgg ccggccgcgc cgggccggta 2521 tctcgtcctt cgggctgagc ggcacgaacg tgcacaccat cctcgagcag gccccggaac 2581 cggccgccga agccggcccc gagccggagc ccggcctggt gccggtcccg ctgtccggcc 2641 ggacggaagc agcgctgcgc gctcaggccg ccaccgtgct ggacaccctg gacgacggcg 2701 tgtcgccggc cgtgctcggg tactcgctgg cctccacccg gtcggccttc gaacaccgtg 2761 cggtgctgct ggccgaggac cacgacgaac tgcggcgcgg cctggccgca ctggccggcg 2821 accagccgga cggcggcgtg gtgcggggca ccgtgacgcg gggccgcacg gcgttcctgt 2881 tcgccggcca gggcagccag cgggccggga tgggccgcga gctgtacgag cgccacccgg 2941 tgttcgccga cgcgctggac gcggtgctgg ggcacttcga cctgccccgt gcgctgcggg 3001 acgtgatgtg ggacgacgat tccacggccc tcgacgagac ggggtacacc cagccggcgt 3061 tgttcgcctt cgaggtggcg ttgttccggt tgctggagtc gtggggtgtg acgccggatt 3121 acctggccgg gcattcgatc ggtgagatcg ccgcggcgca cgtggccgga gtgttgtcgc 3181 tggccgatgc ctgtgcgttg gtcgctgcgc ggggtgcgct gatgcaggcg ctgccgtccg 3241 gcggggccat ggtttcggtg cgcggctccg aggccgacgt cgccgggcac ctcggcgagg 3301 acgtcgccgt cgcggcggtc aacgggcccg agtcggtggt gctggccggg accgaggacg 3361 cggtgctcca ggcggccggc cgcctggagg ccgccggcca caaggtccgc cgcctgcggg 3421 tcagccacgc cttccactcg cccttgatgg atcccgtgct ggccgagttc gcgacggtgg 3481 ctcagggcct gacctaccac //