Mercurial > repos > bgruening > bismark

comparison test-data/output_splitting_report.txt @ 8:9bfe38410155 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 51299fa62f0566a4a897b1c149db564631282fff
author bgruening
date Wed, 22 Aug 2018 08:09:42 -0400
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7:fcadce4d9a06 8:9bfe38410155
1 dataset_11.dat
2
3 Parameters used to extract methylation information:
4 Bismark Extractor Version: v0.20.0
5 Bismark result file: single-end (SAM format)
6 Output specified: comprehensive
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9 Processed 554 lines in total
10 Total number of methylation call strings processed: 554
11
12 Final Cytosine Methylation Report
13 =================================
14 Total number of C's analysed: 8563
15
16 Total methylated C's in CpG context: 245
17 Total methylated C's in CHG context: 51
18 Total methylated C's in CHH context: 114
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20 Total C to T conversions in CpG context: 133
21 Total C to T conversions in CHG context: 1762
22 Total C to T conversions in CHH context: 6258
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24 C methylated in CpG context: 64.8%
25 C methylated in CHG context: 2.8%
26 C methylated in CHH context: 1.8%
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