Mercurial > repos > bgruening > bismark
diff test-data/output_mbias_report.txt @ 8:9bfe38410155 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 51299fa62f0566a4a897b1c149db564631282fff
author | bgruening |
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date | Wed, 22 Aug 2018 08:09:42 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output_mbias_report.txt Wed Aug 22 08:09:42 2018 -0400 @@ -0,0 +1,267 @@ +CpG context +=========== +position count methylated count unmethylated % methylation coverage +1 9 3 75.00 12 +2 4 1 80.00 5 +3 7 2 77.78 9 +4 5 2 71.43 7 +5 3 1 75.00 4 +6 2 2 50.00 4 +7 5 4 55.56 9 +8 7 1 87.50 8 +9 3 2 60.00 5 +10 2 0 100.00 2 +11 4 1 80.00 5 +12 4 2 66.67 6 +13 1 1 50.00 2 +14 4 0 100.00 4 +15 3 1 75.00 4 +16 2 1 66.67 3 +17 3 2 60.00 5 +18 5 3 62.50 8 +19 4 1 80.00 5 +20 2 1 66.67 3 +21 1 3 25.00 4 +22 1 2 33.33 3 +23 1 1 50.00 2 +24 5 0 100.00 5 +25 3 0 100.00 3 +26 4 2 66.67 6 +27 3 2 60.00 5 +28 2 1 66.67 3 +29 6 2 75.00 8 +30 3 1 75.00 4 +31 1 0 100.00 1 +32 3 1 75.00 4 +33 4 2 66.67 6 +34 3 1 75.00 4 +35 2 1 66.67 3 +36 2 3 40.00 5 +37 7 4 63.64 11 +38 4 1 80.00 5 +39 4 1 80.00 5 +40 4 5 44.44 9 +41 5 4 55.56 9 +42 5 2 71.43 7 +43 1 3 25.00 4 +44 0 1 0.00 1 +45 4 1 80.00 5 +46 5 0 100.00 5 +47 3 2 60.00 5 +48 1 1 50.00 2 +49 2 2 50.00 4 +50 3 2 60.00 5 +51 2 4 33.33 6 +52 1 0 100.00 1 +53 2 1 66.67 3 +54 1 0 100.00 1 +55 3 0 100.00 3 +56 1 1 50.00 2 +57 2 0 100.00 2 +58 0 1 0.00 1 +59 4 3 57.14 7 +60 4 4 50.00 8 +61 0 1 0.00 1 +62 4 6 40.00 10 +63 4 0 100.00 4 +64 2 1 66.67 3 +65 0 0 0 +66 3 1 75.00 4 +67 2 0 100.00 2 +68 2 1 66.67 3 +69 4 0 100.00 4 +70 3 2 60.00 5 +71 3 2 60.00 5 +72 3 1 75.00 4 +73 3 0 100.00 3 +74 7 4 63.64 11 +75 3 1 75.00 4 +76 1 0 100.00 1 +77 1 3 25.00 4 +78 0 1 0.00 1 +79 0 3 0.00 3 +80 1 3 25.00 4 +81 1 1 50.00 2 +82 0 2 0.00 2 +83 3 2 60.00 5 +84 3 1 75.00 4 +85 1 1 50.00 2 + +CHG context +=========== +position count methylated count unmethylated % methylation coverage +1 10 21 32.26 31 +2 11 24 31.43 35 +3 5 20 20.00 25 +4 2 10 16.67 12 +5 1 13 7.14 14 +6 0 17 0.00 17 +7 0 27 0.00 27 +8 0 22 0.00 22 +9 0 22 0.00 22 +10 0 26 0.00 26 +11 0 22 0.00 22 +12 1 13 7.14 14 +13 0 14 0.00 14 +14 1 23 4.17 24 +15 0 30 0.00 30 +16 0 17 0.00 17 +17 0 24 0.00 24 +18 0 23 0.00 23 +19 0 14 0.00 14 +20 0 26 0.00 26 +21 0 23 0.00 23 +22 0 25 0.00 25 +23 0 22 0.00 22 +24 0 18 0.00 18 +25 0 20 0.00 20 +26 0 17 0.00 17 +27 2 24 7.69 26 +28 0 22 0.00 22 +29 0 24 0.00 24 +30 0 21 0.00 21 +31 0 21 0.00 21 +32 0 22 0.00 22 +33 0 25 0.00 25 +34 0 15 0.00 15 +35 1 29 3.33 30 +36 1 24 4.00 25 +37 0 30 0.00 30 +38 0 16 0.00 16 +39 0 27 0.00 27 +40 1 19 5.00 20 +41 2 22 8.33 24 +42 0 20 0.00 20 +43 0 20 0.00 20 +44 1 22 4.35 23 +45 0 25 0.00 25 +46 1 21 4.55 22 +47 1 32 3.03 33 +48 1 16 5.88 17 +49 2 26 7.14 28 +50 0 19 0.00 19 +51 0 18 0.00 18 +52 0 20 0.00 20 +53 1 34 2.86 35 +54 0 27 0.00 27 +55 0 24 0.00 24 +56 0 14 0.00 14 +57 0 19 0.00 19 +58 0 19 0.00 19 +59 0 21 0.00 21 +60 0 20 0.00 20 +61 0 25 0.00 25 +62 0 25 0.00 25 +63 0 29 0.00 29 +64 0 21 0.00 21 +65 0 26 0.00 26 +66 0 19 0.00 19 +67 0 20 0.00 20 +68 0 7 0.00 7 +69 1 15 6.25 16 +70 1 19 5.00 20 +71 1 17 5.56 18 +72 0 10 0.00 10 +73 0 22 0.00 22 +74 0 25 0.00 25 +75 0 14 0.00 14 +76 0 24 0.00 24 +77 0 18 0.00 18 +78 1 14 6.67 15 +79 0 16 0.00 16 +80 0 17 0.00 17 +81 0 12 0.00 12 +82 0 17 0.00 17 +83 1 17 5.56 18 +84 0 25 0.00 25 +85 1 17 5.56 18 + +CHH context +=========== +position count methylated count unmethylated % methylation coverage +1 18 31 36.73 49 +2 5 25 16.67 30 +3 4 31 11.43 35 +4 3 28 9.68 31 +5 5 36 12.20 41 +6 3 43 6.52 46 +7 2 52 3.70 54 +8 1 62 1.59 63 +9 2 52 3.70 54 +10 1 57 1.72 58 +11 1 59 1.67 60 +12 0 70 0.00 70 +13 4 55 6.78 59 +14 0 68 0.00 68 +15 1 65 1.52 66 +16 1 74 1.33 75 +17 1 81 1.22 82 +18 1 71 1.39 72 +19 1 72 1.37 73 +20 1 78 1.27 79 +21 0 82 0.00 82 +22 1 69 1.43 70 +23 0 85 0.00 85 +24 1 94 1.05 95 +25 1 78 1.27 79 +26 1 89 1.11 90 +27 0 72 0.00 72 +28 0 84 0.00 84 +29 0 72 0.00 72 +30 1 61 1.61 62 +31 0 79 0.00 79 +32 0 88 0.00 88 +33 3 80 3.61 83 +34 1 85 1.16 86 +35 0 79 0.00 79 +36 2 68 2.86 70 +37 1 62 1.59 63 +38 0 77 0.00 77 +39 1 87 1.14 88 +40 1 77 1.28 78 +41 0 70 0.00 70 +42 2 69 2.82 71 +43 0 66 0.00 66 +44 2 76 2.56 78 +45 3 85 3.41 88 +46 2 69 2.82 71 +47 0 68 0.00 68 +48 0 81 0.00 81 +49 0 73 0.00 73 +50 0 79 0.00 79 +51 0 81 0.00 81 +52 1 65 1.52 66 +53 0 79 0.00 79 +54 3 90 3.23 93 +55 1 80 1.23 81 +56 1 82 1.20 83 +57 1 77 1.28 78 +58 0 71 0.00 71 +59 1 84 1.18 85 +60 1 95 1.04 96 +61 1 84 1.18 85 +62 0 95 0.00 95 +63 1 88 1.12 89 +64 0 89 0.00 89 +65 1 77 1.28 78 +66 3 89 3.26 92 +67 1 69 1.43 70 +68 2 98 2.00 100 +69 2 92 2.13 94 +70 0 94 0.00 94 +71 1 87 1.14 88 +72 1 83 1.19 84 +73 0 87 0.00 87 +74 2 74 2.63 76 +75 1 78 1.27 79 +76 0 74 0.00 74 +77 3 79 3.66 82 +78 1 71 1.39 72 +79 0 66 0.00 66 +80 0 71 0.00 71 +81 1 84 1.18 85 +82 0 88 0.00 88 +83 2 79 2.47 81 +84 2 81 2.41 83 +85 2 63 3.08 65 +