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comparison get_pubchem/get_pubchem_as_smiles.py @ 4:7c1f9962ac07 draft

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Add temporary hack until my galaxy stdout/stderr UTF-8 bug is fixed.
author bgruening
date Fri, 27 Sep 2013 15:51:46 -0400
parents 021f0ef9474f
children
comparison
equal deleted inserted replaced
3:021f0ef9474f 4:7c1f9962ac07
27 27
28 result = pool.map_async(fetch_convert, filenames) 28 result = pool.map_async(fetch_convert, filenames)
29 result.get() 29 result.get()
30 30
31 for filename in os.listdir(td): 31 for filename in os.listdir(td):
32 path = os.path.join(td, filename) + '.smi' 32 path = os.path.join(td, filename)
33 shutil.copyfileobj(open(path, 'rb'), output_handle) 33 shutil.copyfileobj(open(path, 'rb'), output_handle)
34 34
35 output_handle.close() 35 output_handle.close()
36 shutil.rmtree( td ) 36 shutil.rmtree( td )
37 37