Mercurial > repos > bgruening > create_tool_recommendation_model
comparison test-data/test_tool_usage @ 0:9bf25dbe00ad draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/recommendation_training/tools/tool_recommendation_model commit 7fac577189d01cedd01118a77fc2baaefe7d5cad"
| author | bgruening |
|---|---|
| date | Wed, 28 Aug 2019 07:19:38 -0400 |
| parents | |
| children | 76251d1ccdcc |
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| 1 upload1 2019-03-01 176 | |
| 2 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72 2019-03-01 97 | |
| 3 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.2.0 2019-03-01 67 | |
| 4 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3+galaxy2 2019-03-01 53 | |
| 5 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.9.1.3 2019-03-01 51 | |
| 6 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.2 2019-03-01 38 | |
| 7 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 2019-03-01 38 | |
| 8 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7 2019-03-01 31 | |
| 9 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.52 2019-03-01 30 | |
| 10 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-1 2019-03-01 28 | |
| 11 CONVERTER_gz_to_uncompressed 2019-03-01 26 | |
| 12 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare/deeptools_bam_compare/3.0.2.0 2019-03-01 25 | |
| 13 toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.36.5 2019-03-01 25 | |
| 14 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.5 2019-03-01 22 | |
| 15 toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.2 2019-03-01 21 | |
| 16 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.5 2019-03-01 19 | |
| 17 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.3.1 2019-03-01 18 | |
| 18 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.2.0 2019-03-01 17 | |
| 19 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1 2019-03-01 17 | |
| 20 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_gc_bias/deeptools_compute_gc_bias/3.0.2.0 2019-03-01 16 | |
| 21 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_fingerprint/deeptools_plot_fingerprint/3.0.2.0 2019-03-01 16 | |
| 22 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.2 2019-03-01 16 | |
| 23 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0+galaxy4 2019-03-01 13 | |
| 24 toolshed.g2.bx.psu.edu/repos/iuc/flash/flash/1.2.11.3 2019-03-01 13 | |
| 25 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 2019-03-01 13 | |
| 26 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.4.6.p5 2019-03-01 12 | |
| 27 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/3.0.2.0 2019-03-01 12 | |
| 28 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_preprocessing/cardinal_preprocessing/1.12.1.2 2019-03-01 12 | |
| 29 cat1 2019-03-01 11 | |
| 30 toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.9 2019-03-01 11 | |
| 31 toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 2019-03-01 10 | |
| 32 wig_to_bigWig 2019-03-01 10 | |
| 33 CONVERTER_interval_to_bed_0 2019-03-01 10 | |
| 34 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.34.0 2019-03-01 9 | |
| 35 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.1 2019-03-01 9 | |
| 36 toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0.1 2019-03-01 9 | |
| 37 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6 2019-03-01 9 | |
| 38 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplottads/hicexplorer_hicplottads/2.1.4.0 2019-03-01 9 | |
| 39 toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.11 2019-03-01 7 | |
| 40 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/3.0.2.0 2019-03-01 7 | |
| 41 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.1 2019-03-01 6 | |
| 42 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.1.0 2019-03-01 6 | |
| 43 secure_hash_message_digest 2019-03-01 6 | |
| 44 CONVERTER_interval_to_bedstrict_0 2019-03-01 6 | |
| 45 toolshed.g2.bx.psu.edu/repos/iuc/gtftobed12/gtftobed12/357 2019-03-01 6 | |
| 46 CONVERTER_bedgraph_to_bigwig 2019-03-01 5 | |
| 47 toolshed.g2.bx.psu.edu/repos/devteam/concat/gops_concat_1/1.0.1 2019-03-01 5 | |
| 48 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.0.2.0 2019-03-01 5 | |
| 49 toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.1.1 2019-03-01 5 | |
| 50 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_group/mothur_make_group/1.39.5.0 2019-03-01 5 | |
| 51 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.3.1 2019-03-01 5 | |
| 52 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.3.1 2019-03-01 4 | |
| 53 wc_gnu 2019-03-01 4 | |
| 54 __SET_METADATA__ 2019-03-01 4 | |
| 55 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0 2019-03-01 4 | |
| 56 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.2 2019-03-01 4 | |
| 57 toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.4 2019-03-01 4 | |
| 58 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.27.0.1 2019-03-01 4 | |
| 59 toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.1 2019-03-01 4 | |
| 60 Filter1 2019-03-01 4 | |
| 61 toolshed.g2.bx.psu.edu/repos/lparsons/fastq_join/fastq_join/1.1.2-806 2019-03-01 4 | |
| 62 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/3.1.2.0.0 2019-03-01 3 | |
| 63 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.2.0 2019-03-01 3 | |
| 64 toolshed.g2.bx.psu.edu/repos/bgruening/graphicsmagick_image_convert/graphicsmagick_image_convert/1.3.31 2019-03-01 3 | |
| 65 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/2.9.1.4 2019-03-01 3 | |
| 66 toolshed.g2.bx.psu.edu/repos/devteam/fastq_filter/fastq_filter/1.1.1 2019-03-01 3 | |
| 67 toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.2 2019-03-01 3 | |
| 68 toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.4 2019-03-01 3 | |
| 69 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3 2019-03-01 3 | |
| 70 toolshed.g2.bx.psu.edu/repos/imgteam/coordinates_of_roi/ip_coordinates_of_roi/0.0.3 2019-03-01 3 | |
| 71 Grouping1 2019-03-01 3 | |
| 72 toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.2 2019-03-01 3 | |
| 73 toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0 2019-03-01 2 | |
| 74 toolshed.g2.bx.psu.edu/repos/bgruening/graphicsmagick_image_convert/graphicsmagick_image_convert/1.3.26 2019-03-01 2 | |
| 75 toolshed.g2.bx.psu.edu/repos/galaxyp/filter_by_fasta_ids/filter_by_fasta_ids/2.1 2019-03-01 2 | |
| 76 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.27.1 2019-03-01 2 | |
| 77 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.2 2019-03-01 2 | |
| 78 toolshed.g2.bx.psu.edu/repos/tgac/miranda/miranda/3.3a 2019-03-01 2 | |
| 79 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/2.27.0.0 2019-03-01 2 | |
| 80 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 2019-03-01 2 | |
| 81 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.4.0 2019-03-01 2 | |
| 82 toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_files/mothur_merge_files/1.39.5.0 2019-03-01 2 | |
| 83 toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.7 2019-03-01 2 | |
| 84 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1 2019-03-01 2 | |
| 85 sklearn_ensemble 2019-03-01 2 | |
| 86 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.2 2019-03-01 2 | |
| 87 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/1.12.1.2 2019-03-01 2 | |
| 88 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.2 2019-03-01 2 | |
| 89 ebi_sra_main 2019-03-01 2 | |
| 90 toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0 2019-03-01 2 | |
| 91 join1 2019-03-01 2 | |
| 92 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.3.1 2019-03-01 2 | |
| 93 toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.0 2019-03-01 2 | |
| 94 sort1 2019-03-01 2 | |
| 95 toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.3 2019-03-01 2 | |
| 96 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.2+galaxy2 2019-03-01 1 | |
| 97 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.32.0 2019-03-01 1 | |
| 98 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.30.1 2019-03-01 1 | |
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| 100 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.38 2019-03-01 1 | |
| 101 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_raxml/1.0.0 2019-03-01 1 | |
| 102 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_slopbed/2.27.0.0 2019-03-01 1 | |
| 103 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/3.1.2.0.0 2019-03-01 1 | |
| 104 re_he_maldi_image_registration 2019-03-01 1 | |
| 105 toolshed.g2.bx.psu.edu/repos/imgteam/overlay_moving_and_fixed_image/ip_viz_overlay_moving_and_fixed_image/0.0.1 2019-03-01 1 | |
| 106 toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.8 2019-03-01 1 | |
| 107 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_ensemble/sklearn_ensemble/1.0 2019-03-01 1 | |
| 108 CONVERTER_fastq_to_fqtoc0 2019-03-01 1 | |
| 109 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.1.4.0 2019-03-01 1 | |
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| 112 toolshed.g2.bx.psu.edu/repos/imgteam/scale_image/ip_scale_image/0.2 2019-03-01 1 | |
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| 114 toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.39.5.0 2019-03-01 1 | |
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| 1914 toolshed.g2.bx.psu.edu/repos/iuc/mummer_dnadiff/mummer_dnadiff/4.0.0beta2 2019-01-01 4 | |
| 1915 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.9 2019-01-01 4 | |
| 1916 toolshed.g2.bx.psu.edu/repos/jjohnson/sqlite_to_tabular/sqlite_to_tabular/0.0.1 2019-01-01 4 | |
| 1917 toolshed.g2.bx.psu.edu/repos/rnateam/rcas/rcas/1.5.4 2019-01-01 4 | |
| 1918 CONVERTER_picard_interval_list_to_bed6 2019-01-01 4 | |
| 1919 bed_to_bigBed 2019-01-01 4 | |
| 1920 toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.2.0 2019-01-01 4 | |
| 1921 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_compare/vcftools_compare/0.1 2019-01-01 4 | |
| 1922 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.1.8.3 2019-01-01 4 | |
| 1923 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.1.0 2019-01-01 4 | |
| 1924 toolshed.g2.bx.psu.edu/repos/rnateam/blockbuster/blockbuster/0.1.2 2019-01-01 4 | |
| 1925 toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.8.4 2019-01-01 4 | |
| 1926 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgbroadcall/2.1.1.20160309.0 2019-01-01 4 | |
| 1927 toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.1 2019-01-01 4 | |
| 1928 toolshed.g2.bx.psu.edu/repos/lparsons/fastq_join/fastq_join/1.1.2-806.1 2019-01-01 4 | |
| 1929 toolshed.g2.bx.psu.edu/repos/anton/vcfcombine/vcfcombine/0.0.1 2019-01-01 3 | |
| 1930 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 2019-01-01 3 | |
| 1931 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_preprocessing/preproc/0.4 2019-01-01 3 | |
| 1932 toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_files/mothur_merge_files/1.36.1.0 2019-01-01 3 | |
| 1933 CONVERTER_interval_to_bed6_0 2019-01-01 3 | |
| 1934 toolshed.g2.bx.psu.edu/repos/devteam/vcfgeno2haplo/vcfgeno2haplo/1.0.0_rc1+galaxy0 2019-01-01 3 | |
| 1935 toolshed.g2.bx.psu.edu/repos/iuc/qiime_alpha_diversity/qiime_alpha_diversity/1.9.1.0 2019-01-01 3 | |
| 1936 toolshed.g2.bx.psu.edu/repos/crs4/edena/edena_ovl_wrapper/0.3 2019-01-01 3 | |
| 1937 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.36.1.0 2019-01-01 3 | |
| 1938 velvetg 2019-01-01 3 | |
| 1939 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.2.0.1 2019-01-01 3 | |
| 1940 toolshed.g2.bx.psu.edu/repos/iuc/gemini_fusions/gemini_fusions/0.20.1 2019-01-01 3 | |
| 1941 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.4.0 2019-01-01 3 | |
| 1942 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_subtractbed/2.27.1 2019-01-01 3 | |
| 1943 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_group/mothur_make_group/1.36.1.0 2019-01-01 3 | |
| 1944 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/rxlr_motifs/0.0.14 2019-01-01 3 | |
| 1945 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idconflictresolver/IDConflictResolver/2.2.0 2019-01-01 3 | |
| 1946 toolshed.g2.bx.psu.edu/repos/iuc/picrust_predict_metagenomes/picrust_predict_metagenomes/1.1.1.0 2019-01-01 3 | |
| 1947 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond_makedb/0.8.24 2019-01-01 3 | |
| 1948 toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.221.3 2019-01-01 3 | |
| 1949 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.36.1.0 2019-01-01 3 | |
| 1950 toolshed.g2.bx.psu.edu/repos/rnateam/cmv/cmv/1.0.8 2019-01-01 3 | |
| 1951 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_shufflebed/2.27.0.0 2019-01-01 3 | |
| 1952 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_DownsampleSam/2.18.2.1 2019-01-01 3 | |
| 1953 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_msgfplusadapter/MSGFPlusAdapter/2.2.0 2019-01-01 3 | |
| 1954 toolshed.g2.bx.psu.edu/repos/iuc/gemini_db_info/gemini_db_info/0.18.1.1 2019-01-01 3 | |
| 1955 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_svm_classifier/sklearn_svm_classifier/1.0 2019-01-01 3 | |
| 1956 toolshed.g2.bx.psu.edu/repos/galaxyp/msi_combine/mass_spectrometry_imaging_combine/1.10.0.5 2019-01-01 3 | |
| 1957 toolshed.g2.bx.psu.edu/repos/iuc/gemini_db_info/gemini_db_info/0.18.1.0 2019-01-01 3 | |
| 1958 toolshed.g2.bx.psu.edu/repos/iuc/fgsea/fgsea/1.6.0 2019-01-01 3 | |
| 1959 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_BedToIntervalList/2.18.2.1 2019-01-01 3 | |
| 1960 toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.36.1.0 2019-01-01 3 | |
| 1961 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindermultiplex/FeatureFinderMultiplex/2.3.0 2019-01-01 3 | |
| 1962 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_biom/mothur_make_biom/1.39.5.0 2019-01-01 3 | |
| 1963 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgpeakcall/2.1.1.20160309.0 2019-01-01 3 | |
| 1964 toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_seqs/mothur_filter_seqs/1.36.1.0 2019-01-01 3 | |
| 1965 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_biom/mothur_make_biom/1.36.1.0 2019-01-01 3 | |
| 1966 toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/2.0.0 2019-01-01 3 | |
| 1967 toolshed.g2.bx.psu.edu/repos/iuc/meme_dreme/meme_dreme/4.11.2.0 2019-01-01 3 | |
| 1968 toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_seqs/mothur_count_seqs/1.36.1.0 2019-01-01 3 | |
| 1969 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.1 2019-01-01 3 | |
| 1970 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.3.0 2019-01-01 3 | |
| 1971 toolshed.g2.bx.psu.edu/repos/iuc/gemini_amend/gemini_amend/0.20.1 2019-01-01 3 | |
| 1972 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindermultiplex/FeatureFinderMultiplex/2.2.0 2019-01-01 3 | |
| 1973 toolshed.g2.bx.psu.edu/repos/iuc/humann2_renorm_table/humann2_renorm_table/0.11.1.0 2019-01-01 3 | |
| 1974 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.3 2019-01-01 3 | |
| 1975 toolshed.g2.bx.psu.edu/repos/iuc/gemini_actionable_mutations/gemini_actionable_mutations/0.18.1.0 2019-01-01 3 | |
| 1976 toolshed.g2.bx.psu.edu/repos/iuc/ucsc_fasplit/fasplit/357 2019-01-01 3 | |
| 1977 gene2exon1 2019-01-01 3 | |
| 1978 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.2.0 2019-01-01 3 | |
| 1979 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.2.0 2019-01-01 3 | |
| 1980 translate_nucleotides 2019-01-01 3 | |
| 1981 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.3r.1 2019-01-01 3 | |
| 1982 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fastq/tabular_to_fastq/1.0.0 2019-01-01 3 | |
| 1983 toolshed.g2.bx.psu.edu/repos/devteam/vcf2pgsnp/vcf2pgSnp/1.0.0 2019-01-01 3 | |
| 1984 toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_base_recalibrator/2.8.0 2019-01-01 3 | |
| 1985 toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants/nanopolish_variants/0.1.0 2019-01-01 3 | |
| 1986 __SORTLIST__ 2019-01-01 3 | |
| 1987 toolshed.g2.bx.psu.edu/repos/rnateam/structure_to_gspan/structure_to_gspan/0.3 2019-01-01 3 | |
| 1988 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_groups/mothur_get_groups/1.39.5.0 2019-01-01 3 | |
| 1989 srma_wrapper 2019-01-01 3 | |
| 1990 toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_otu/mothur_classify_otu/1.36.1.0 2019-01-01 3 | |
| 1991 toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/build_ucsc_custom_track_1/1.0.0 2019-01-01 3 | |
| 1992 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_multiple_to_gd_genotype/1.0.0 2019-01-01 3 | |
| 1993 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.12.5+galaxy3 2019-01-01 3 | |
| 1994 toolshed.g2.bx.psu.edu/repos/bgruening/diffbind/diffbind/2.6.6.4 2019-01-01 3 | |
| 1995 toolshed.g2.bx.psu.edu/repos/devteam/gi2taxonomy/Fetch Taxonomic Ranks/1.1.0 2019-01-01 3 | |
| 1996 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.2.0 2019-01-01 3 | |
| 1997 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.2.0 2019-01-01 3 | |
| 1998 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.26.0 2019-01-01 3 | |
| 1999 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.2.0 2019-01-01 3 | |
| 2000 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster/mothur_cluster/1.39.5.0 2019-01-01 3 | |
| 2001 toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.46.0 2019-01-01 3 | |
| 2002 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/nspdk_sparse/9.2.2 2019-01-01 3 | |
| 2003 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.1 2019-01-01 3 | |
| 2004 toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.36.1.0 2019-01-01 3 | |
| 2005 toolshed.g2.bx.psu.edu/repos/iuc/migmap/migmap/1.0.2.2 2019-01-01 3 | |
| 2006 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.4.0 2019-01-01 3 | |
| 2007 toolshed.g2.bx.psu.edu/repos/devteam/fastq_stats/fastq_stats/1.0.0 2019-01-01 3 | |
| 2008 toolshed.g2.bx.psu.edu/repos/iuc/mothur_pre_cluster/mothur_pre_cluster/1.36.1.0 2019-01-01 3 | |
| 2009 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_convert/0.1.8_1 2019-01-01 3 | |
| 2010 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.3.3 2019-01-01 3 | |
| 2011 toolshed.g2.bx.psu.edu/repos/devteam/varscan_version_2/varscan/0.1 2019-01-01 3 | |
| 2012 toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1 2019-01-01 3 | |
| 2013 toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_rare/mothur_remove_rare/1.39.5.0 2019-01-01 3 | |
| 2014 toolshed.g2.bx.psu.edu/repos/devteam/cuffnorm/cuffnorm/2.2.1.2 2019-01-01 3 | |
| 2015 toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.1 2019-01-01 3 | |
| 2016 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_subtractbed/2.27.0.0 2019-01-01 3 | |
| 2017 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergematrixbins/hicexplorer_hicmergematrixbins/2.1.4.0 2019-01-01 3 | |
| 2018 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2.2 2019-01-01 3 | |
| 2019 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/1.136.0 2019-01-01 3 | |
| 2020 toolshed.g2.bx.psu.edu/repos/devteam/fastx_nucleotides_distribution/cshl_fastx_nucleotides_distribution/1.0.1 2019-01-01 3 | |
| 2021 __RELABEL_FROM_FILE__ 2019-01-01 3 | |
| 2022 toolshed.g2.bx.psu.edu/repos/iuc/trinity_contig_exn50_statistic/trinity_contig_exn50_statistic/2.8.4 2019-01-01 3 | |
| 2023 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.4 2019-01-01 3 | |
| 2024 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/2.18.2.1 2019-01-01 3 | |
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