Mercurial > repos > bgruening > deeptools

comparison profiler.xml @ 13:b4c5dd45778a draft

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Uploaded
author bgruening
date Mon, 16 Dec 2013 04:36:19 -0500
parents baf4283e2d7f
children 5ea8782d650c
comparison
equal deleted inserted replaced
12:aea72b24dea0 13:b4c5dd45778a
16 #if $output.showOutputSettings == "yes" 16 #if $output.showOutputSettings == "yes"
17 --plotFileFormat $output.outFileFormat 17 --plotFileFormat $output.outFileFormat
18 18
19 #if $output.saveData: 19 #if $output.saveData:
20 --outFileNameData '$outFileNameData' 20 --outFileNameData '$outFileNameData'
21 #end if
22
23 #if $output.saveMatrix:
24 --outFileNameMatrix '$outFileNameMatrix'
25 #end if 21 #end if
26 22
27 #if $output.saveSortedRegions: 23 #if $output.saveSortedRegions:
28 --outFileSortedRegions '$outFileSortedRegions' 24 --outFileSortedRegions '$outFileSortedRegions'
29 #end if 25 #end if
77 <param name="startLabel" type="text" value="TSS" size="10" label="Label for the region start" help ="[only for scale-regions mode] Label shown in the plot for the start of the region. Default is TSS (transcription start site), but could be changed to anything, e.g. &quot;peak start&quot;." /> 73 <param name="startLabel" type="text" value="TSS" size="10" label="Label for the region start" help ="[only for scale-regions mode] Label shown in the plot for the start of the region. Default is TSS (transcription start site), but could be changed to anything, e.g. &quot;peak start&quot;." />
78 <param name="endLabel" type="text" value="TES" size="10" label="Label for the region end" help="[only for scale-regions mode] Label shown in the plot for the region end. Default is TES (transcription end site)."/> 74 <param name="endLabel" type="text" value="TES" size="10" label="Label for the region end" help="[only for scale-regions mode] Label shown in the plot for the region end. Default is TES (transcription end site)."/>
79 </when> 75 </when>
80 </conditional> 76 </conditional>
81 77
82 <expand macro="graphic_output_settings"> 78 <expand macro="input_graphic_output_settings">
83 <expand macro="input_image_file_format" /> 79 <expand macro="input_image_file_format" />
84 </expand> 80 </expand>
85 81
86 <conditional name="advancedOpt"> 82 <conditional name="advancedOpt">
87 <param name="showAdvancedOpt" type="select" label="Show advanced options" > 83 <param name="showAdvancedOpt" type="select" label="Show advanced options" >
120 <param name="yAxisLabel" type="text" value="" size="50" label="Description for the y-axis label for the top panel" /> 116 <param name="yAxisLabel" type="text" value="" size="50" label="Description for the y-axis label for the top panel" />
121 </when> 117 </when>
122 </conditional> 118 </conditional>
123 </inputs> 119 </inputs>
124 <outputs> 120 <outputs>
125 <expand macro="output_graphic_outputs"> 121 <expand macro="output_image_file_format" />
126 <expand macro="output_image_file_format" /> 122 <expand macro="output_graphic_outputs" />
127 </expand>
128 </outputs> 123 </outputs>
129 <help> 124 <help>
130 125
131 **What it does** 126 **What it does**
132 127