Mercurial > repos > bgruening > deeptools

diff profiler.xml @ 13:b4c5dd45778a draft

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Uploaded
author bgruening
date Mon, 16 Dec 2013 04:36:19 -0500
parents baf4283e2d7f
children 5ea8782d650c
line wrap: on
line diff
--- a/profiler.xml	Sat Dec 14 08:58:41 2013 -0500
+++ b/profiler.xml	Mon Dec 16 04:36:19 2013 -0500
@@ -20,10 +20,6 @@
                 --outFileNameData '$outFileNameData' 
             #end if
 
-            #if $output.saveMatrix:
-                --outFileNameMatrix '$outFileNameMatrix'
-            #end if
-
             #if $output.saveSortedRegions:
                 --outFileSortedRegions '$outFileSortedRegions'
             #end if
@@ -79,7 +75,7 @@
             </when>
         </conditional>
 
-        <expand macro="graphic_output_settings">
+        <expand macro="input_graphic_output_settings">
             <expand macro="input_image_file_format" />
         </expand>
 
@@ -122,9 +118,8 @@
         </conditional>
     </inputs>
     <outputs>
-        <expand macro="output_graphic_outputs">
-            <expand macro="output_image_file_format" />
-        </expand>
+        <expand macro="output_image_file_format" />
+        <expand macro="output_graphic_outputs" />
     </outputs>
     <help>