diffbind: diffbind.xml annotate

annotate diffbind.xml @ 4:69138bfd8644 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 074fed99c6df6bad17341bbfa57645f222907ad4

author	bgruening
date	Wed, 12 Apr 2017 15:14:20 -0400
parents	d6dcb3dd5f8f
children	b5839ce0befb

rev	line source
4 69138bfd8644 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 074fed99c6df6bad17341bbfa57645f222907ad4 bgruening parents: 3 diff changeset	1 <tool id="diffbind" name="DiffBind" version="2.2.0">
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	2 <description> differential binding analysis of ChIP-Seq peak data</description>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	3 <requirements>
4 69138bfd8644 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 074fed99c6df6bad17341bbfa57645f222907ad4 bgruening parents: 3 diff changeset	4 <requirement type="package" version="1.16.3">bioconductor-diffbind</requirement>
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	5 </requirements>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	6 <stdio>
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	7 <regex match="Execution halted"
9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	8 source="both"
9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	9 level="fatal"
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	10 description="Execution halted." />
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	11 <regex match="Input-Error 01"
9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	12 source="both"
9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	13 level="fatal"
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	14 description="Error in your input parameters: Make sure you only apply factors to selected samples." />
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	15 <regex match="Error in"
9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	16 source="both"
9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	17 level="fatal"
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	18 description="An undefined error occured, please check your intput carefully and contact your administrator." />
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	19 </stdio>
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	20 <command>
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	21 <![CDATA[
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	22 ## seems that diffbind also needs file extensions to work properly
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	23 #set $counter = 1
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	24 #for $sample in $samples:
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	25 ln -s $sample.bamreads #echo str($counter) + "_bamreads.bam"# &&
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	26 ln -s ${sample.bamreads.metadata.bam_index} #echo str($counter) + "_bamreads.bai"# &&
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	27 #if str( $sample.bamcontrol ) != 'None':
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	28 ln -s $sample.bamcontrol #echo str($counter) + "_bamcontrol.bam"# &&
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	29 ln -s ${sample.bamcontrol.metadata.bam_index} #echo str($counter) + "_bamcontrol.bai"# &&
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	30 #end if
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	31 #set $counter = $counter + 1
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	32 #end for
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	33
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	34 Rscript $__tool_directory__/diffbind.R
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	35 -i $infile
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	36 -o $outfile
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	37 -p $plots
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	38 -f $format
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	39 ]]>
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	40 </command>
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	41 <configfiles>
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	42 <configfile name="infile">
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	43 #set $counter = 1
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	44 #for $sample in $samples:
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	45 #if str( $sample.bamcontrol ) != 'None' and $counter == 1:
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	46 SampleID,Tissue,Factor,Condition,Replicate,bamReads,bamControl,Peaks
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	47 #elif $counter == 1:
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	48 SampleID,Tissue,Factor,Condition,Replicate,bamReads,Peaks
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	49 #end if
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	50 #if str( $sample.bamcontrol ) != 'None':
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	51 $sample.sample_id,$sample.tissue,$sample.factor,$sample.condition,$sample.replicate,#echo str($counter) + '_bamreads.bam'#,#echo str($counter) + '_bamcontrol.bam'#,$sample.peaks
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	52 #else:
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	53 $sample.sample_id,$sample.tissue,$sample.factor,$sample.condition,$sample.replicate,#echo str($counter) + '_bamreads.bam'#,$sample.peaks
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	54 #end if
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	55 #set $counter = $counter + 1
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	56 #end for
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	57 </configfile>
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	58 </configfiles>
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	59 <inputs>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	60 <repeat name="samples" title="Samples" min="2">
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	61 <param name="sample_id" type="text" value="Sample ID" label="Specify a sample id" help="e.g. BT474.1-" />
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	62 <param name="tissue" type="text" value="Tissue" label="Specify the tissue" help="e.g. BT474" />
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	63 <param name="factor" type="text" value="Factor Name" label="Specify a factor name" help="e.g. ER" />
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	64 <param name="condition" type="text" value="Condition" label="Specify the condition" help="e.g. Resistent" />
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	65 <param name="replicate" type="integer" value="1" label="Specify the replicate number" help="e.g. 1" />
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	66 <param format="bam" name="bamreads" type="data" label="Read BAM file" help="Specify the Read BAM file, used for Peak calling."/>
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	67 <param format="bam" name="bamcontrol" type="data" optional="True" label="Control BAM file" help="If specifying a control BAM file for this sample, then all samples are required to specify one."/>
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	68 <param format="bed" name="peaks" type="data" label="Peak file" help="Result of your Peak calling experiment."/>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	69 </repeat>
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	70 <param name="pdf" type="boolean" truevalue="" falsevalue="" checked="true"
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	71 label="Visualising the analysis results"
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	72 help="output an additional PDF files" />
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	73 <param name="format" type="select" label="Output Format">
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	74 <option value="bed">BED</option>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	75 <option value="gff">GFF</option>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	76 <option value="wig">WIG</option>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	77 </param>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	78 </inputs>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	79 <outputs>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	80 <data format="bed" name="outfile" label="Differential binding sites on ${on_string}">
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	81 <change_format>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	82 <when input="format" value="wig" format="wig" />
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	83 <when input="format" value="gff" format="gff" />
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	84 </change_format>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	85 </data>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	86 <data format="pdf" name="plots" label="Differential binding sites on ${on_string}">
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	87 <filter>pdf == True</filter>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	88 </data>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	89 </outputs>
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	90 <help>
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	91 <![CDATA[
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	92
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	93 What it does
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	94 ************
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	95
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	96 Diffbind provides functions for processing ChIP-Seq data enriched for genomic loci where specific protein/DNA binding occurs, including peak sets identified by ChIP-Seq peak callers and aligned sequence read datasets.
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	97
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	98 Input
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	99 *****
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	100
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	101 * You have to specify your samples. Here is one example::
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	102
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	103 ID Tissue Factor Condition Treatment Replicate Caller Intervals
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	104 BT4741 BT474 ER Resistant Full-Media 1 raw 1084
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	105
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	106 * BAM file which contains the mapped sequencing reads can be associated with each peakset
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	107 * Control BAM file represents a control dataset and are optional, but have to specified for all when used.
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	108 * Peak file: Result of your Peak calling experiment
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	109
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	110 Output
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	111 ******
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	112
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	113 As output format you can choose BED, GFF, WIG.
9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	114
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	115 References
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	116 **********
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	117
9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	118 DiffBind_ Authors: Rory Stark, Gordon Brown (2011)
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	119
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	120 .. _DiffBind: http://www.bioconductor.org/packages/release/bioc/html/DiffBind.html
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	121
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	122 Wrapper authors: Bjoern Gruening, Pavankumar Videm
7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	123
1 9e9f85c20d99 Uploaded bgruening parents: 0 diff changeset	124 ]]>
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	125 </help>
3 d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	126 <citations>
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	127 <citation type="doi">doi:10.1038/nature10730</citation>
d6dcb3dd5f8f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7 bgruening parents: 2 diff changeset	128 </citations>
0 7faaf4a5e4e1 Uploaded bgruening parents: diff changeset	129 </tool>

Mercurial > repos > bgruening > diffbind

annotate diffbind.xml @ 4:69138bfd8644 draft