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changeset 5:231af56a10a6 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flexynesis commit d3154a8d94e936c33056665edc74d103e54fc981
author bgruening
date Mon, 30 Jun 2025 17:19:54 +0000
parents d89227ba1de6
children c6afd2efff94
files flexynesis.xml macros.xml test-data/loc.sample tool-data/flexynesis.loc.sample
diffstat 4 files changed, 21 insertions(+), 449 deletions(-) [+]
line wrap: on
line diff
--- a/flexynesis.xml	Tue Jun 24 11:35:03 2025 +0000
+++ b/flexynesis.xml	Mon Jun 30 17:19:54 2025 +0000
@@ -1045,18 +1045,18 @@
             <output_collection name="plots" type="list">
                 <element name="job.embeddings_test_pca_Erlotinib_known">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="962,732" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="962,732" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1941"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1941" delta="10"/>
                     </assert_contents>
                 </element>
                 <element name="job.embeddings_test_pca_Erlotinib_predicted">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="959.5,732.5" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="959.5,732.5" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1941"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1941" delta="10"/>
                     </assert_contents>
                 </element>
             </output_collection>
@@ -1076,10 +1076,10 @@
             <output_collection name="plots" type="list">
                 <element name="clin_km_km_risk_subtypes">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="971,732" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="971,732" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1941"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1941" delta="10"/>
                     </assert_contents>
                 </element>
             </output_collection>
@@ -1102,10 +1102,10 @@
             <output_collection name="plots" type="list">
                 <element name="job.final_model_cox_hazard_ratios">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="972,737" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="972,737" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1941"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1941" delta="10"/>
                     </assert_contents>
                 </element>
             </output_collection>
@@ -1124,10 +1124,10 @@
             <output_collection name="plots" type="list">
                 <element name="job.predicted_labels_scatter_Erlotinib">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="969,735" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="969,735" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1940"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1940" delta="10"/>
                     </assert_contents>
                 </element>
             </output_collection>
@@ -1257,10 +1257,10 @@
             <output_collection name="plots" type="list">
                 <element name="job.final_model_cox_hazard_ratios">
                     <assert_contents>
-                        <has_image_center_of_mass center_of_mass="972,737" eps="5"/>
+                        <has_image_center_of_mass center_of_mass="972,737" eps="20"/>
                         <has_image_channels channels="3"/>
-                        <has_image_height height="1461"/>
-                        <has_image_width width="1941"/>
+                        <has_image_height height="1461" delta="10"/>
+                        <has_image_width width="1941" delta="10"/>
                     </assert_contents>
                 </element>
             </output_collection>
--- a/macros.xml	Tue Jun 24 11:35:03 2025 +0000
+++ b/macros.xml	Mon Jun 30 17:19:54 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">0.2.20</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">24.1</token>
     <xml name="requirements">
         <requirements>
--- a/test-data/loc.sample	Tue Jun 24 11:35:03 2025 +0000
+++ b/test-data/loc.sample	Mon Jun 30 17:19:54 2025 +0000
@@ -1,1 +1,3 @@
 lgg_tcga	lgg_tcga	1
+acc_tcga_gdc	acc_tcga_gdc	1
+acc_2019	acc_2019	1
\ No newline at end of file
--- a/tool-data/flexynesis.loc.sample	Tue Jun 24 11:35:03 2025 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,430 +0,0 @@
-acbc_mskcc_2015	acbc_mskcc_2015	1
-acc_2019	acc_2019	1
-acc_tcga	acc_tcga	1
-acc_tcga_pan_can_atlas_2018	acc_tcga_pan_can_atlas_2018	1
-acyc_fmi_2014	acyc_fmi_2014	1
-acyc_jhu_2016	acyc_jhu_2016	1
-acyc_mda_2015	acyc_mda_2015	1
-acyc_mgh_2016	acyc_mgh_2016	1
-acyc_mskcc_2013	acyc_mskcc_2013	1
-acyc_sanger_2013	acyc_sanger_2013	1
-aflexynesis.loc	aflexynesis.loc	1
-all_phase2_target_2018_pub	all_phase2_target_2018_pub	1
-all_stjude_2013	all_stjude_2013	1
-all_stjude_2015	all_stjude_2015	1
-all_stjude_2016	all_stjude_2016	1
-aml_ohsu_2018	aml_ohsu_2018	1
-aml_ohsu_2022	aml_ohsu_2022	1
-aml_target_2018_pub	aml_target_2018_pub	1
-ampca_bcm_2016	ampca_bcm_2016	1
-angs_painter_2020	angs_painter_2020	1
-angs_project_painter_2018	angs_project_painter_2018	1
-appendiceal_msk_2022	appendiceal_msk_2022	1
-asclc_msk_2024	asclc_msk_2024	1
-bcc_unige_2016	bcc_unige_2016	1
-bfn_duke_nus_2015	bfn_duke_nus_2015	1
-biliary_tract_summit_2022	biliary_tract_summit_2022	1
-bladder_columbia_msk_2018	bladder_columbia_msk_2018	1
-bladder_msk_2023	bladder_msk_2023	1
-blca_bcan_hcrn_2022	blca_bcan_hcrn_2022	1
-blca_bgi	blca_bgi	1
-blca_cornell_2016	blca_cornell_2016	1
-blca_dfarber_mskcc_2014	blca_dfarber_mskcc_2014	1
-blca_mskcc_solit_2012	blca_mskcc_solit_2012	1
-blca_mskcc_solit_2014	blca_mskcc_solit_2014	1
-blca_msk_tcga_2020	blca_msk_tcga_2020	1
-blca_nmibc_2017	blca_nmibc_2017	1
-blca_plasmacytoid_mskcc_2016	blca_plasmacytoid_mskcc_2016	1
-blca_tcga	blca_tcga	1
-blca_tcga_pan_can_atlas_2018	blca_tcga_pan_can_atlas_2018	1
-blca_tcga_pub	blca_tcga_pub	1
-blca_tcga_pub_2017	blca_tcga_pub_2017	1
-bm_nsclc_mskcc_2023	bm_nsclc_mskcc_2023	1
-bowel_colitis_msk_2022	bowel_colitis_msk_2022	1
-braf_msk_archer_2024	braf_msk_archer_2024	1
-braf_msk_impact_2024	braf_msk_impact_2024	1
-brain_cptac_2020	brain_cptac_2020	1
-brca_bccrc	brca_bccrc	1
-brca_bccrc_xenograft_2014	brca_bccrc_xenograft_2014	1
-brca_broad	brca_broad	1
-brca_cptac_2020	brca_cptac_2020	1
-brca_dfci_2020	brca_dfci_2020	1
-brca_fuscc_2020	brca_fuscc_2020	1
-brca_hta9_htan_2022	brca_hta9_htan_2022	1
-brca_igr_2015	brca_igr_2015	1
-brca_jup_msk_2020	brca_jup_msk_2020	1
-brca_mapk_hp_msk_2021	brca_mapk_hp_msk_2021	1
-brca_mbcproject_2022	brca_mbcproject_2022	1
-brca_mbcproject_wagle_2017	brca_mbcproject_wagle_2017	1
-brca_metabric	brca_metabric	1
-brca_mskcc_2019	brca_mskcc_2019	1
-brca_pareja_msk_2020	brca_pareja_msk_2020	1
-brca_sanger	brca_sanger	1
-brca_smc_2018	brca_smc_2018	1
-brca_tcga	brca_tcga	1
-brca_tcga_pan_can_atlas_2018	brca_tcga_pan_can_atlas_2018	1
-brca_tcga_pub	brca_tcga_pub	1
-brca_tcga_pub2015	brca_tcga_pub2015	1
-breast_alpelisib_2020	breast_alpelisib_2020	1
-breast_ink4_msk_2021	breast_ink4_msk_2021	1
-breast_msk_2018	breast_msk_2018	1
-ccle_broad_2019	ccle_broad_2019	1
-ccrcc_dfci_2019	ccrcc_dfci_2019	1
-ccrcc_irc_2014	ccrcc_irc_2014	1
-ccrcc_utokyo_2013	ccrcc_utokyo_2013	1
-cellline_ccle_broad	cellline_ccle_broad	1
-cellline_nci60	cellline_nci60	1
-cervix_msk_2023	cervix_msk_2023	1
-cesc_tcga	cesc_tcga	1
-cesc_tcga_pan_can_atlas_2018	cesc_tcga_pan_can_atlas_2018	1
-cfdna_msk_2019	cfdna_msk_2019	1
-chl_sccc_2023	chl_sccc_2023	1
-chol_icgc_2017	chol_icgc_2017	1
-chol_jhu_2013	chol_jhu_2013	1
-chol_msk_2018	chol_msk_2018	1
-chol_nccs_2013	chol_nccs_2013	1
-chol_nus_2012	chol_nus_2012	1
-chol_tcga	chol_tcga	1
-chol_tcga_pan_can_atlas_2018	chol_tcga_pan_can_atlas_2018	1
-cll_broad_2015	cll_broad_2015	1
-cll_broad_2022	cll_broad_2022	1
-cll_iuopa_2015	cll_iuopa_2015	1
-cllsll_icgc_2011	cllsll_icgc_2011	1
-coad_caseccc_2015	coad_caseccc_2015	1
-coad_cptac_2019	coad_cptac_2019	1
-coadread_cass_2020	coadread_cass_2020	1
-coadread_dfci_2016	coadread_dfci_2016	1
-coadread_genentech	coadread_genentech	1
-coadread_mskcc	coadread_mskcc	1
-coadread_mskresistance_2022	coadread_mskresistance_2022	1
-coadread_tcga	coadread_tcga	1
-coadread_tcga_pan_can_atlas_2018	coadread_tcga_pan_can_atlas_2018	1
-coadread_tcga_pub	coadread_tcga_pub	1
-coad_silu_2022	coad_silu_2022	1
-crc_apc_impact_2020	crc_apc_impact_2020	1
-crc_dd_2022	crc_dd_2022	1
-crc_eo_2020	crc_eo_2020	1
-crc_hta11_htan_2021	crc_hta11_htan_2021	1
-crc_msk_2017	crc_msk_2017	1
-crc_nigerian_2020	crc_nigerian_2020	1
-cscc_dfarber_2015	cscc_dfarber_2015	1
-cscc_hgsc_bcm_2014	cscc_hgsc_bcm_2014	1
-cscc_ranson_2022	cscc_ranson_2022	1
-cscc_ucsf_2021	cscc_ucsf_2021	1
-csf_msk_2024	csf_msk_2024	1
-ctcl_columbia_2015	ctcl_columbia_2015	1
-desm_broad_2015	desm_broad_2015	1
-difg_glass	difg_glass	1
-difg_glass_2019	difg_glass_2019	1
-difg_msk_2023	difg_msk_2023	1
-dlbc_broad_2012	dlbc_broad_2012	1
-dlbcl_dfci_2018	dlbcl_dfci_2018	1
-dlbcl_duke_2017	dlbcl_duke_2017	1
-dlbc_tcga	dlbc_tcga	1
-dlbc_tcga_pan_can_atlas_2018	dlbc_tcga_pan_can_atlas_2018	1
-egc_msk_2017	egc_msk_2017	1
-egc_msk_2023	egc_msk_2023	1
-egc_mskcc_2020	egc_mskcc_2020	1
-egc_msk_tp53_ccr_2022	egc_msk_tp53_ccr_2022	1
-egc_tmucih_2015	egc_tmucih_2015	1
-egc_trap_ccr_msk_2023	egc_trap_ccr_msk_2023	1
-egc_trap_msk_2020	egc_trap_msk_2020	1
-esca_broad	esca_broad	1
-esca_tcga	esca_tcga	1
-esca_tcga_pan_can_atlas_2018	esca_tcga_pan_can_atlas_2018	1
-escc_icgc	escc_icgc	1
-escc_ucla_2014	escc_ucla_2014	1
-es_dfarber_broad_2014	es_dfarber_broad_2014	1
-es_dsrct_msk_2023	es_dsrct_msk_2023	1
-es_iocurie_2014	es_iocurie_2014	1
-gbc_msk_2018	gbc_msk_2018	1
-gbc_mskcc_2022	gbc_mskcc_2022	1
-gbc_shanghai_2014	gbc_shanghai_2014	1
-gbm_columbia_2019	gbm_columbia_2019	1
-gbm_cptac_2021	gbm_cptac_2021	1
-gbm_mayo_pdx_sarkaria_2019	gbm_mayo_pdx_sarkaria_2019	1
-gbm_tcga	gbm_tcga	1
-gbm_tcga_pan_can_atlas_2018	gbm_tcga_pan_can_atlas_2018	1
-gbm_tcga_pub	gbm_tcga_pub	1
-gbm_tcga_pub2013	gbm_tcga_pub2013	1
-gct_msk_2016	gct_msk_2016	1
-gct_msk_2020	gct_msk_2020	1
-gist_msk_2022	gist_msk_2022	1
-gist_msk_2023	gist_msk_2023	1
-glioma_msk_2018	glioma_msk_2018	1
-glioma_mskcc_2019	glioma_mskcc_2019	1
-hcc_clca_2024	hcc_clca_2024	1
-hccihch_pku_2019	hccihch_pku_2019	1
-hcc_inserm_fr_2015	hcc_inserm_fr_2015	1
-hcc_jcopo_msk_2023	hcc_jcopo_msk_2023	1
-hcc_meric_2021	hcc_meric_2021	1
-hcc_msk_2024	hcc_msk_2024	1
-hcc_mskimpact_2018	hcc_mskimpact_2018	1
-hcc_msk_venturaa_2018	hcc_msk_venturaa_2018	1
-heme_msk_impact_2022	heme_msk_impact_2022	1
-hgsoc_msk_2021	hgsoc_msk_2021	1
-histiocytosis_cobi_msk_2019	histiocytosis_cobi_msk_2019	1
-hnc_mskcc_2016	hnc_mskcc_2016	1
-hnsc_broad	hnsc_broad	1
-hnsc_jhu	hnsc_jhu	1
-hnsc_mdanderson_2013	hnsc_mdanderson_2013	1
-hnsc_tcga	hnsc_tcga	1
-hnsc_tcga_pan_can_atlas_2018	hnsc_tcga_pan_can_atlas_2018	1
-hnsc_tcga_pub	hnsc_tcga_pub	1
-ihch_ismms_2015	ihch_ismms_2015	1
-ihch_msk_2021	ihch_msk_2021	1
-ihch_mskcc_2020	ihch_mskcc_2020	1
-ihch_smmu_2014	ihch_smmu_2014	1
-ilc_msk_2023	ilc_msk_2023	1
-kich_tcga	kich_tcga	1
-kich_tcga_pan_can_atlas_2018	kich_tcga_pan_can_atlas_2018	1
-kich_tcga_pub	kich_tcga_pub	1
-kirc_bgi	kirc_bgi	1
-kirc_tcga	kirc_tcga	1
-kirc_tcga_pan_can_atlas_2018	kirc_tcga_pan_can_atlas_2018	1
-kirc_tcga_pub	kirc_tcga_pub	1
-kirp_tcga	kirp_tcga	1
-kirp_tcga_pan_can_atlas_2018	kirp_tcga_pan_can_atlas_2018	1
-laml_tcga	laml_tcga	1
-laml_tcga_pan_can_atlas_2018	laml_tcga_pan_can_atlas_2018	1
-laml_tcga_pub	laml_tcga_pub	1
-lcll_broad_2013	lcll_broad_2013	1
-lgggbm_tcga_pub	lgggbm_tcga_pub	1
-lgg_tcga	lgg_tcga	1
-lgg_tcga_pan_can_atlas_2018	lgg_tcga_pan_can_atlas_2018	1
-lgg_ucsf_2014	lgg_ucsf_2014	1
-lgsoc_mapk_msk_2022	lgsoc_mapk_msk_2022	1
-liad_inserm_fr_2014	liad_inserm_fr_2014	1
-lihc_amc_prv	lihc_amc_prv	1
-lihc_riken	lihc_riken	1
-lihc_tcga	lihc_tcga	1
-lihc_tcga_pan_can_atlas_2018	lihc_tcga_pan_can_atlas_2018	1
-luad_broad	luad_broad	1
-luad_cptac_2020	luad_cptac_2020	1
-luad_mskcc_2015	luad_mskcc_2015	1
-luad_mskcc_2020	luad_mskcc_2020	1
-luad_mskcc_2023_met_organotropism	luad_mskcc_2023_met_organotropism	1
-luad_mskimpact_2021	luad_mskimpact_2021	1
-luad_msk_npjpo_2021	luad_msk_npjpo_2021	1
-luad_oncosg_2020	luad_oncosg_2020	1
-luad_tcga	luad_tcga	1
-luad_tcga_pan_can_atlas_2018	luad_tcga_pan_can_atlas_2018	1
-luad_tcga_pub	luad_tcga_pub	1
-luad_tsp	luad_tsp	1
-lung_msk_2017	lung_msk_2017	1
-lung_msk_mind_2020	lung_msk_mind_2020	1
-lung_msk_pdx	lung_msk_pdx	1
-lung_nci_2022	lung_nci_2022	1
-lung_pdx_msk_2021	lung_pdx_msk_2021	1
-lung_smc_2016	lung_smc_2016	1
-lusc_cptac_2021	lusc_cptac_2021	1
-lusc_tcga	lusc_tcga	1
-lusc_tcga_pan_can_atlas_2018	lusc_tcga_pan_can_atlas_2018	1
-lusc_tcga_pub	lusc_tcga_pub	1
-lymphoma_cellline_msk_2020	lymphoma_cellline_msk_2020	1
-makeanimpact_ccr_2023	makeanimpact_ccr_2023	1
-mbc_msk_2021	mbc_msk_2021	1
-mbl_broad_2012	mbl_broad_2012	1
-mbl_dkfz_2017	mbl_dkfz_2017	1
-mbl_icgc	mbl_icgc	1
-mbl_pcgp	mbl_pcgp	1
-mbl_sickkids_2016	mbl_sickkids_2016	1
-mbn_mdacc_2013	mbn_mdacc_2013	1
-mbn_msk_2024	mbn_msk_2024	1
-mbn_sfu_2023	mbn_sfu_2023	1
-mcl_idibips_2013	mcl_idibips_2013	1
-mds_iwg_2022	mds_iwg_2022	1
-mds_mskcc_2020	mds_mskcc_2020	1
-mds_tokyo_2011	mds_tokyo_2011	1
-mel_dfci_2019	mel_dfci_2019	1
-mel_mskimpact_2020	mel_mskimpact_2020	1
-mel_tsam_liang_2017	mel_tsam_liang_2017	1
-mel_ucla_2016	mel_ucla_2016	1
-meso_tcga	meso_tcga	1
-meso_tcga_pan_can_atlas_2018	meso_tcga_pan_can_atlas_2018	1
-metastatic_solid_tumors_mich_2017	metastatic_solid_tumors_mich_2017	1
-mixed_allen_2018	mixed_allen_2018	1
-mixed_cfdna_msk_2020	mixed_cfdna_msk_2020	1
-mixed_impact_subset_2022	mixed_impact_subset_2022	1
-mixed_kunga_msk_2022	mixed_kunga_msk_2022	1
-mixed_msk_tcga_2021	mixed_msk_tcga_2021	1
-mixed_pipseq_2017	mixed_pipseq_2017	1
-mixed_selpercatinib_2020	mixed_selpercatinib_2020	1
-mm_broad	mm_broad	1
-mng_utoronto_2021	mng_utoronto_2021	1
-mnm_washu_2016	mnm_washu_2016	1
-mpcproject_broad_2021	mpcproject_broad_2021	1
-mpn_cimr_2013	mpn_cimr_2013	1
-mpnst_mskcc	mpnst_mskcc	1
-mrt_bcgsc_2016	mrt_bcgsc_2016	1
-msk_access_2021	msk_access_2021	1
-msk_ch_2020	msk_ch_2020	1
-msk_ch_2023	msk_ch_2023	1
-msk_chord_2024	msk_chord_2024	1
-msk_ch_ped_2021	msk_ch_ped_2021	1
-msk_ctdna_vte_2024	msk_ctdna_vte_2024	1
-msk_impact_2017	msk_impact_2017	1
-msk_met_2021	msk_met_2021	1
-msk_spectrum_tme_2022	msk_spectrum_tme_2022	1
-mtnn_msk_2022	mtnn_msk_2022	1
-nbl_amc_2012	nbl_amc_2012	1
-nbl_broad_2013	nbl_broad_2013	1
-nbl_target_2018_pub	nbl_target_2018_pub	1
-nbl_ucologne_2015	nbl_ucologne_2015	1
-nccrcc_genentech_2014	nccrcc_genentech_2014	1
-nepc_wcm_2016	nepc_wcm_2016	1
-nhl_bcgsc_2011	nhl_bcgsc_2011	1
-nhl_bcgsc_2013	nhl_bcgsc_2013	1
-normal_skin_fibroblast_2024	normal_skin_fibroblast_2024	1
-normal_skin_keratinocytes_2024	normal_skin_keratinocytes_2024	1
-normal_skin_melanocytes_2024	normal_skin_melanocytes_2024	1
-npc_nusingapore	npc_nusingapore	1
-nsclc_ctdx_msk_2022	nsclc_ctdx_msk_2022	1
-nsclc_mskcc_2015	nsclc_mskcc_2015	1
-nsclc_mskcc_2018	nsclc_mskcc_2018	1
-nsclc_pd1_msk_2018	nsclc_pd1_msk_2018	1
-nsclc_tcga_broad_2016	nsclc_tcga_broad_2016	1
-nsclc_tracerx_2017	nsclc_tracerx_2017	1
-nsclc_unito_2016	nsclc_unito_2016	1
-nst_nfosi_ntap	nst_nfosi_ntap	1
-ntrk_msk_2019	ntrk_msk_2019	1
-odg_msk_2017	odg_msk_2017	1
-ovary_geomx_gray_foundation_2024	ovary_geomx_gray_foundation_2024	1
-ov_tcga	ov_tcga	1
-ov_tcga_pan_can_atlas_2018	ov_tcga_pan_can_atlas_2018	1
-ov_tcga_pub	ov_tcga_pub	1
-paac_jhu_2014	paac_jhu_2014	1
-paac_msk_jco_2023	paac_msk_jco_2023	1
-paad_cptac_2021	paad_cptac_2021	1
-paad_icgc	paad_icgc	1
-paad_qcmg_uq_2016	paad_qcmg_uq_2016	1
-paad_tcga	paad_tcga	1
-paad_tcga_pan_can_atlas_2018	paad_tcga_pan_can_atlas_2018	1
-paad_utsw_2015	paad_utsw_2015	1
-pact_jhu_2011	pact_jhu_2011	1
-paired_bladder_2022	paired_bladder_2022	1
-pancan_mappyacts_2022	pancan_mappyacts_2022	1
-pancan_pcawg_2020	pancan_pcawg_2020	1
-pancreas_msk_2024	pancreas_msk_2024	1
-panet_arcnet_2017	panet_arcnet_2017	1
-panet_jhu_2011	panet_jhu_2011	1
-panet_msk_2018	panet_msk_2018	1
-panet_msk_erc_2023	panet_msk_erc_2023	1
-panet_shanghai_2013	panet_shanghai_2013	1
-pan_origimed_2020	pan_origimed_2020	1
-past_dkfz_heidelberg_2013	past_dkfz_heidelberg_2013	1
-pcnsl_mayo_2015	pcnsl_mayo_2015	1
-pcnsl_msk_2024	pcnsl_msk_2024	1
-pcpg_tcga	pcpg_tcga	1
-pcpg_tcga_pan_can_atlas_2018	pcpg_tcga_pan_can_atlas_2018	1
-pcpg_tcga_pub	pcpg_tcga_pub	1
-pdac_msk_2024	pdac_msk_2024	1
-pediatric_dkfz_2017	pediatric_dkfz_2017	1
-plmeso_msk_2024	plmeso_msk_2024	1
-plmeso_nyu_2015	plmeso_nyu_2015	1
-pog570_bcgsc_2020	pog570_bcgsc_2020	1
-pptc_2019	pptc_2019	1
-prad_broad	prad_broad	1
-prad_broad_2013	prad_broad_2013	1
-prad_cdk12_mskcc_2020	prad_cdk12_mskcc_2020	1
-prad_cpcg_2017	prad_cpcg_2017	1
-prad_eururol_2017	prad_eururol_2017	1
-prad_fhcrc	prad_fhcrc	1
-prad_mcspc_mskcc_2020	prad_mcspc_mskcc_2020	1
-prad_mich	prad_mich	1
-prad_msk_2019	prad_msk_2019	1
-prad_mskcc	prad_mskcc	1
-prad_mskcc_2014	prad_mskcc_2014	1
-prad_mskcc_2017	prad_mskcc_2017	1
-prad_mskcc_cheny1_organoids_2014	prad_mskcc_cheny1_organoids_2014	1
-prad_msk_mdanderson_2023	prad_msk_mdanderson_2023	1
-prad_msk_stopsack_2021	prad_msk_stopsack_2021	1
-prad_organoids_msk_2022	prad_organoids_msk_2022	1
-prad_p1000	prad_p1000	1
-prad_pik3r1_msk_2021	prad_pik3r1_msk_2021	1
-prad_su2c_2015	prad_su2c_2015	1
-prad_su2c_2019	prad_su2c_2019	1
-prad_tcga	prad_tcga	1
-prad_tcga_pan_can_atlas_2018	prad_tcga_pan_can_atlas_2018	1
-prad_tcga_pub	prad_tcga_pub	1
-prostate_dkfz_2018	prostate_dkfz_2018	1
-prostate_msk_2024	prostate_msk_2024	1
-prostate_pcbm_swiss_2019	prostate_pcbm_swiss_2019	1
-ptad_msk_2024	ptad_msk_2024	1
-rbl_cfdna_msk_2020	rbl_cfdna_msk_2020	1
-rbl_mskcc_2020	rbl_mskcc_2020	1
-rectal_msk_2019	rectal_msk_2019	1
-rectal_msk_2022	rectal_msk_2022	1
-rms_msk_2023	rms_msk_2023	1
-rms_nih_2014	rms_nih_2014	1
-rt_target_2018_pub	rt_target_2018_pub	1
-sarc_mskcc	sarc_mskcc	1
-sarcoma_msk_2022	sarcoma_msk_2022	1
-sarcoma_msk_2023	sarcoma_msk_2023	1
-sarcoma_mskcc_2022	sarcoma_mskcc_2022	1
-sarcoma_ucla_2024	sarcoma_ucla_2024	1
-sarc_tcga	sarc_tcga	1
-sarc_tcga_pan_can_atlas_2018	sarc_tcga_pan_can_atlas_2018	1
-sarc_tcga_pub	sarc_tcga_pub	1
-scco_mskcc	scco_mskcc	1
-sclc_cancercell_gardner_2017	sclc_cancercell_gardner_2017	1
-sclc_clcgp	sclc_clcgp	1
-sclc_jhu	sclc_jhu	1
-sclc_ucologne_2015	sclc_ucologne_2015	1
-skcm_broad	skcm_broad	1
-skcm_broad_brafresist_2012	skcm_broad_brafresist_2012	1
-skcm_broad_dfarber	skcm_broad_dfarber	1
-skcm_dfci_2015	skcm_dfci_2015	1
-skcm_mskcc_2014	skcm_mskcc_2014	1
-skcm_tcga	skcm_tcga	1
-skcm_tcga_pan_can_atlas_2018	skcm_tcga_pan_can_atlas_2018	1
-skcm_tcga_pub_2015	skcm_tcga_pub_2015	1
-skcm_vanderbilt_mskcc_2015	skcm_vanderbilt_mskcc_2015	1
-skcm_yale	skcm_yale	1
-soft_tissue_msk_2023	soft_tissue_msk_2023	1
-stad_oncosg_2018	stad_oncosg_2018	1
-stad_pfizer_uhongkong	stad_pfizer_uhongkong	1
-stad_tcga	stad_tcga	1
-stad_tcga_pan_can_atlas_2018	stad_tcga_pan_can_atlas_2018	1
-stad_tcga_pub	stad_tcga_pub	1
-stad_uhongkong	stad_uhongkong	1
-stad_utokyo	stad_utokyo	1
-stes_tcga_pub	stes_tcga_pub	1
-stmyec_wcm_2022	stmyec_wcm_2022	1
-summit_2018	summit_2018	1
-tet_nci_2014	tet_nci_2014	1
-tgct_tcga	tgct_tcga	1
-tgct_tcga_pan_can_atlas_2018	tgct_tcga_pan_can_atlas_2018	1
-thca_tcga	thca_tcga	1
-thca_tcga_pan_can_atlas_2018	thca_tcga_pan_can_atlas_2018	1
-thca_tcga_pub	thca_tcga_pub	1
-thym_tcga	thym_tcga	1
-thym_tcga_pan_can_atlas_2018	thym_tcga_pan_can_atlas_2018	1
-thyroid_gatci_2024	thyroid_gatci_2024	1
-thyroid_mskcc_2016	thyroid_mskcc_2016	1
-tmb_mskcc_2018	tmb_mskcc_2018	1
-uccc_nih_2017	uccc_nih_2017	1
-ucec_ancestry_cds_msk_2023	ucec_ancestry_cds_msk_2023	1
-ucec_ccr_cfdna_msk_2022	ucec_ccr_cfdna_msk_2022	1
-ucec_ccr_msk_2022	ucec_ccr_msk_2022	1
-ucec_cptac_2020	ucec_cptac_2020	1
-ucec_msk_2018	ucec_msk_2018	1
-ucec_msk_2024	ucec_msk_2024	1
-ucec_tcga	ucec_tcga	1
-ucec_tcga_pan_can_atlas_2018	ucec_tcga_pan_can_atlas_2018	1
-ucec_tcga_pub	ucec_tcga_pub	1
-ucs_jhu_2014	ucs_jhu_2014	1
-ucs_tcga	ucs_tcga	1
-ucs_tcga_pan_can_atlas_2018	ucs_tcga_pan_can_atlas_2018	1
-um_qimr_2016	um_qimr_2016	1
-urcc_mskcc_2016	urcc_mskcc_2016	1
-usarc_msk_2020	usarc_msk_2020	1
-utuc_cornell_baylor_mdacc_2019	utuc_cornell_baylor_mdacc_2019	1
-utuc_igbmc_2021	utuc_igbmc_2021	1
-utuc_msk_2019	utuc_msk_2019	1
-utuc_mskcc_2015	utuc_mskcc_2015	1
-utuc_pdx_msk_2019	utuc_pdx_msk_2019	1
-uvm_tcga	uvm_tcga	1
-uvm_tcga_pan_can_atlas_2018	uvm_tcga_pan_can_atlas_2018	1
-vsc_cuk_2018	vsc_cuk_2018	1
-wt_target_2018_pub	wt_target_2018_pub	1
\ No newline at end of file