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annotate macros.xml @ 7:3ef480892a9f draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
author bgruening
date Fri, 23 Dec 2022 20:00:51 +0000
parents 690c2caa367e
children 6ec1b853c8fd
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5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
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1 <macros>
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3ef480892a9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
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2 <token name="@TOOL_VERSION@">1.3.6</token>
3ef480892a9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
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3 <token name="@SUFFIX_VERSION@">0</token>
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4 <xml name="requirements">
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5 <requirements>
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
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6 <requirement type="package" version="@TOOL_VERSION@">gfastats</requirement>
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7 </requirements>
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
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8 </xml>
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9 <xml name="biotools">
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10 <xrefs>
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11 <xref type="bio.tools">gfastats</xref>
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
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12 </xrefs>
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
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13 </xml>
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
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14 <xml name="citations">
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
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15 <citations>
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
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16 <citation type="bibtex">
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
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17 @misc{githubgfastats,
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18 author = {Formenti, Giulio},
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19 year = {2022},
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20 title = {gfastats},
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21 publisher = {GitHub},
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
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22 journal = {GitHub repository},
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23 url = {https://github.com/vgl-hub/gfastats}}
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24 </citation>
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25 </citations>
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26 </xml>
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27 <xml name="length_macro">
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28 <param argument="--line-length" type="integer" min="0" max="80" value=""
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29 optional="true" label="Specify line length"
3ef480892a9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
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30 help="Optional: specifies line length when output format is fasta. Default has no line breaks."/>
3ef480892a9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
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31 </xml>
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32 <xml name="terminal_overlaps_macro">
3ef480892a9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
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33 <conditional name="terminal_overlaps_condition">
3ef480892a9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
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34 <param name="terminal_overlaps_select" type="select"
3ef480892a9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
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35 label="Terminal overlaps selection" help="Optional: Do you want to detect terminal overlaps?">
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36 <option value="no">No (default)</option>
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37 <option value="yes">Yes</option>
3ef480892a9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
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38 </param>
3ef480892a9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
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39 <when value="no"/>
3ef480892a9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 70ba23af483a5a7edc5d5b4205b32ff77773f87a
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40 <when value="yes">
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41 <param name="terminal_overlaps_length" type="integer" min="500" value="500"
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42 optional="false" label="Terminal overlaps length"
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43 help="Integer for minimum length required to count as an overlap for detecting terminal overlaps (minimum is 500)" />
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44 </when>
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45 </conditional>
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46 </xml>
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47 </macros>