Mercurial > repos > bgruening > gfastats

changeset 4:3fba9c77550a draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit b0a88a5b8e4870f681f572f533a8091b3caee38c
author bgruening
date Tue, 27 Sep 2022 21:30:11 +0000
parents 8ccbf07a5433
children 5127a713de83
files gfastats.xml macros.xml test-data/test_07_stats.tabular test-data/test_12_stats.tabular
diffstat 4 files changed, 13 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/gfastats.xml	Mon Jul 11 14:13:13 2022 +0000
+++ b/gfastats.xml	Tue Sep 27 21:30:11 2022 +0000
@@ -235,7 +235,11 @@
                     <param name="out_size" value="c"/>
                 </conditional>
             </conditional>
-            <output name="stats" value="test_02_stats.tabular" ftype="tabular"/>
+            <output name="stats" ftype="tabular">
+                <assert_contents>
+                    <has_text text="S1_76.1&#009;9445" />
+                </assert_contents>
+            </output>
         </test>
         <!--Test 03 -->
         <test expect_num_outputs="1">
@@ -246,7 +250,11 @@
                     <param name="selector" value="sequence"/>
                 </conditional>
             </conditional>
-            <output name="stats" value="test_03_stats.tabular" ftype="tabular"/>
+            <output name="stats" ftype="tabular">
+                <assert_contents>
+                    <has_text text="23029444-6c7d-4f19-ac8e-4c0a478589d0.1&#009;&#009;476&#009;198&#009;68&#009;93&#009;117&#009;33.82&#009;0" />
+                </assert_contents>
+            </output>
         </test>
         <!--Test 04 -->
         <test expect_num_outputs="1">
--- a/macros.xml	Mon Jul 11 14:13:13 2022 +0000
+++ b/macros.xml	Tue Sep 27 21:30:11 2022 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.3.0</token>
+    <token name="@TOOL_VERSION@">1.3.4</token>
     <token name="@SUFFIX_VERSION@">0</token>
     <xml name="requirements">
         <requirements>
--- a/test-data/test_07_stats.tabular	Mon Jul 11 14:13:13 2022 +0000
+++ b/test-data/test_07_stats.tabular	Tue Sep 27 21:30:11 2022 +0000
@@ -1,4 +1,4 @@
-+++Summary+++: 
++++Assembly summary+++: 
 # scaffolds: 3
 Total scaffold length: 419576
 Average scaffold length: 139858.67
--- a/test-data/test_12_stats.tabular	Mon Jul 11 14:13:13 2022 +0000
+++ b/test-data/test_12_stats.tabular	Tue Sep 27 21:30:11 2022 +0000
@@ -1,4 +1,4 @@
-+++Summary+++: 
++++Assembly summary+++: 
 # scaffolds: 2
 Total scaffold length: 839152
 Average scaffold length: 419576.00