Mercurial > repos > bgruening > glimmer_gene_calling_workflow

comparison glimmer3_with_trainingset.ga @ 6:9d5515db5920 draft default tip

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author bgruening
date Fri, 23 Aug 2013 02:54:15 -0400
parents 2405efd751a0
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5:2405efd751a0 6:9d5515db5920
1 { 1 {
2 "a_galaxy_workflow": "true", 2 "a_galaxy_workflow": "true",
3 "annotation": "", 3 "annotation": "Runs Glimmer3 to predict genes in microbial DNA using a training set of known genes.<br />\n<br />\nThis workflow is <a href=\"http://toolshed.g2.bx.psu.edu/view/bgruening/glimmer_gene_calling_workflow\" target=\"_blank\">available on the Galaxy Tool Shed</a> with a README file giving more information including sample data, and full citation details (Cock et al. 2013).",
4 "format-version": "0.1", 4 "format-version": "0.1",
5 "name": "Glimmer gene calling with trainingset.", 5 "name": "Glimmer gene calling with trainingset.",
6 "steps": { 6 "steps": {
7 "0": { 7 "0": {
8 "annotation": "The set of genes is used to train the gene calling of glimmer.", 8 "annotation": "Nucleotide FASTA file of gene sequences used to train the gene calling of glimmer.",
9 "id": 0, 9 "id": 0,
10 "input_connections": {}, 10 "input_connections": {},
11 "inputs": [ 11 "inputs": [
12 { 12 {
13 "description": "The set of genes is used to train the gene calling of glimmer.", 13 "description": "Nucleotide FASTA file of gene sequences used to train the gene calling of glimmer.",
14 "name": "Set of Genes" 14 "name": "Set of Genes"
15 } 15 }
16 ], 16 ],
17 "name": "Input dataset", 17 "name": "Input dataset",
18 "outputs": [], 18 "outputs": [],
26 "tool_version": null, 26 "tool_version": null,
27 "type": "data_input", 27 "type": "data_input",
28 "user_outputs": [] 28 "user_outputs": []
29 }, 29 },
30 "1": { 30 "1": {
31 "annotation": "", 31 "annotation": "Nucleotide FASTA file of genomic DNA (e.g. assembled contigs) to find genes in.",
32 "id": 1, 32 "id": 1,
33 "input_connections": {}, 33 "input_connections": {},
34 "inputs": [ 34 "inputs": [
35 { 35 {
36 "description": "", 36 "description": "Nucleotide FASTA file of genomic DNA (e.g. assembled contigs) to find genes in.",
37 "name": "Input Genomic Sequence" 37 "name": "Input Genomic Sequence"
38 } 38 }
39 ], 39 ],
40 "name": "Input dataset", 40 "name": "Input dataset",
41 "outputs": [], 41 "outputs": [],