Mercurial > repos > bgruening > glimmer_hmm

annotate glimmerHMM/glimmerhmm_to_sequence.xml @ 1:4da91bb244dc draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
author rmarenco
date Thu, 14 Jul 2016 15:11:33 -0400
parents c9699375fcf6
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c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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1 <tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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2 <description>converter</description>
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4da91bb244dc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
rmarenco
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3 <command interpreter='python'>glimmerhmm_to_sequence.py
4da91bb244dc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
rmarenco
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4 $glimmerhmm_input
4da91bb244dc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
rmarenco
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5 $genome_input
4da91bb244dc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
rmarenco
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6 $output
4da91bb244dc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
rmarenco
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7 $to_protein
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c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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8 </command>
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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9 <inputs>
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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10 <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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11 <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" />
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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12 <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" />
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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13 </inputs>
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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14 <outputs>
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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15 <data name="output" format="fasta" />
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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16 </outputs>
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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17 <help>
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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19 **What it does**
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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21 It converts the GlimmerHMM GFF output to a Fasta File.
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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23 </help>
c9699375fcf6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
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24 </tool>